Cow genome map
| Conread name: | Ss1.1-rova003_g18.5 |
| Conread position: | 18-256 |
| Cow position: | chr25:36033547-36033290 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 84-253 |
| Cow position: | chr25:2111096-2110932 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 73, 26 |
| Conread position: | 88-253 |
| Cow position: | chr25:34768711-34768870 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 133-249 |
| Cow position: | chr25:9957058-9957181 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 133-252 |
| Cow position: | chr25:7306284-7306158 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 133-252 |
| Cow position: | chr25:28187965-28188092 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 133-253 |
| Cow position: | chr25:1838216-1838092 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 133-253 |
| Cow position: | chr25:5514993-5514865 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 133-253 |
| Cow position: | chr25:7216811-7216686 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 44, 64 |
| Conread position: | 133-253 |
| Cow position: | chr25:7329528-7329403 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 133-253 |
| Cow position: | chr25:8918297-8918416 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 133-253 |
| Cow position: | chr25:10138073-10137953 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 93 |
| Conread position: | 133-253 |
| Cow position: | chr25:12081341-12081467 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 133-253 |
| Cow position: | chr25:14791736-14791609 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 133-253 |
| Cow position: | chr25:15377306-15377183 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 21, 67 |
| Conread position: | 133-253 |
| Cow position: | chr25:17991608-17991728 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 24 |
| Conread position: | 133-253 |
| Cow position: | chr25:22297038-22297163 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 133-253 |
| Cow position: | chr25:24452196-24452313 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 91, 54 |
| Conread position: | 133-253 |
| Cow position: | chr25:26269958-26270079 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 133-253 |
| Cow position: | chr25:26701009-26700892 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 133-253 |
| Cow position: | chr25:36138669-36138785 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 133-253 |
| Cow position: | chr25:36779480-36779351 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 133-256 |
| Cow position: | chr25:26654890-26654761 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 133-258 |
| Cow position: | chr25:12824038-12824170 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 125 |
| Conread position: | 133-262 |
| Cow position: | chr25:15319899-15319769 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 50, 29 |
| Conread position: | 133-268 |
| Cow position: | chr25:16001546-16001684 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 133-279 |
| Cow position: | chr25:8961751-8961601 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 134-248 |
| Cow position: | chr25:16921819-16921930 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 10 |
| Conread position: | 134-249 |
| Cow position: | chr25:11054882-11054764 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 134-253 |
| Cow position: | chr25:788242-788120 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 134-253 |
| Cow position: | chr25:12609321-12609200 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 134-253 |
| Cow position: | chr25:26679208-26679083 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 134-253 |
| Cow position: | chr25:35333137-35333013 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 134-253 |
| Cow position: | chr25:36036801-36036925 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 134-258 |
| Cow position: | chr25:33550487-33550357 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 134-262 |
| Cow position: | chr25:7750430-7750304 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 136-241 |
| Cow position: | chr25:22531259-22531152 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 136-253 |
| Cow position: | chr25:26089836-26089959 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 137-253 |
| Cow position: | chr25:21893314-21893193 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 109 |
| Conread position: | 137-258 |
| Cow position: | chr25:20211105-20211230 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 139-253 |
| Cow position: | chr25:22332740-22332617 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 139-258 |
| Cow position: | chr25:20008109-20007985 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 140-249 |
| Cow position: | chr25:35625209-35625317 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 140-258 |
| Cow position: | chr25:11823522-11823642 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 140-259 |
| Cow position: | chr25:12204447-12204317 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 141-256 |
| Cow position: | chr25:14833687-14833806 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 141-258 |
| Cow position: | chr25:10365779-10365901 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 146-253 |
| Cow position: | chr25:36081846-36081732 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 146-258 |
| Cow position: | chr25:12520992-12521108 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 151-258 |
| Cow position: | chr25:9396408-9396300 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 53 |
Show alignments to all cow chromosomes.