Cow genome map

Conread name: Ss1.1-rova003_g18.5

Conread position: 15-253
Cow position: chr6:47305472-47305236 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 131, 15

Conread position: 75-253
Cow position: chr6:59718882-59718693 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 124-258
Cow position: chr6:46282977-46283108 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 35, 9

Conread position: 128-249
Cow position: chr6:20230800-20230930 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 128-253
Cow position: chr6:61137401-61137272 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 23

Conread position: 129-253
Cow position: chr6:24962168-24962046 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 131-254
Cow position: chr6:61644806-61644940 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 132-253
Cow position: chr6:607283-607163 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 93, 19

Conread position: 132-253
Cow position: chr6:14958320-14958448 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 133-249
Cow position: chr6:37149210-37149088 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 104
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 13

Conread position: 133-249
Cow position: chr6:38641518-38641395 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 133-249
Cow position: chr6:40032212-40032094 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 100
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 133-249
Cow position: chr6:44984351-44984230 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 17

Conread position: 133-252
Cow position: chr6:19446274-19446157 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 133-252
Cow position: chr6:25773364-25773485 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 133-252
Cow position: chr6:32287659-32287536 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 47, 12

Conread position: 133-253
Cow position: chr6:7119598-7119713 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 101
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 133-253
Cow position: chr6:8788016-8788141 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 133-253
Cow position: chr6:11246787-11246660 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 133-253
Cow position: chr6:12542909-12543036 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 133-253
Cow position: chr6:17090623-17090496 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 133-253
Cow position: chr6:38207468-38207594 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 109
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 28, 37

Conread position: 133-253
Cow position: chr6:56848892-56849020 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 133-253
Cow position: chr6:56850038-56849909 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 133-253
Cow position: chr6:58363987-58364114 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 133-253
Cow position: chr6:58370779-58370650 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 133-253
Cow position: chr6:59069603-59069727 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 133-253
Cow position: chr6:66531800-66531924 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 46, 18

Conread position: 133-253
Cow position: chr6:66874373-66874248 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 113

Conread position: 133-256
Cow position: chr6:38614840-38614713 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 109
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 20, 94

Conread position: 133-258
Cow position: chr6:21542344-21542210 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 133-258
Cow position: chr6:38233980-38233850 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 109
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 13

Conread position: 134-247
Cow position: chr6:44194529-44194639 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 44, 23

Conread position: 134-249
Cow position: chr6:16316326-16316207 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 102
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 134-253
Cow position: chr6:21231548-21231428 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 134-253
Cow position: chr6:23247942-23248062 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 134-253
Cow position: chr6:31535549-31535670 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 134-253
Cow position: chr6:54867537-54867410 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 135-250
Cow position: chr6:51486434-51486318 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 135-253
Cow position: chr6:54365309-54365434 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 135-253
Cow position: chr6:58597487-58597607 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 135-253
Cow position: chr6:67950974-67950850 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 107
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 11, 67

Conread position: 135-258
Cow position: chr6:60456848-60456725 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 110

Conread position: 135-274
Cow position: chr6:57164448-57164302 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 136-248
Cow position: chr6:16423720-16423602 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 136-253
Cow position: chr6:32121925-32121808 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 136-253
Cow position: chr6:54132834-54132714 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 137-253
Cow position: chr6:4864529-4864651 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 137-259
Cow position: chr6:15937833-15937961 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 137-268
Cow position: chr6:16411209-16411073 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 9

Conread position: 139-253
Cow position: chr6:24515179-24515296 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 139-253
Cow position: chr6:60350277-60350398 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 139-253
Cow position: chr6:60740033-60739912 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 139-254
Cow position: chr6:5958009-5958123 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 140-253
Cow position: chr6:15305591-15305478 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 141-249
Cow position: chr6:15300811-15300918 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 97
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 83, 35

Conread position: 141-253
Cow position: chr6:130148-130264 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 98
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 141-253
Cow position: chr6:5609432-5609543 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 141-253
Cow position: chr6:50984239-50984122 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 21

Conread position: 142-258
Cow position: chr6:377142-377021 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 19

Conread position: 143-253
Cow position: chr6:19351141-19351257 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 146-249
Cow position: chr6:38771296-38771187 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 94
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 146-253
Cow position: chr6:17997306-17997418 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 151-258
Cow position: chr6:603096-602983 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 97
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 154-253
Cow position: chr6:416101-415995 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 155-253
Cow position: chr6:12623465-12623369 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 172-258
Cow position: chr6:21590669-21590583 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 75
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.