Cow genome map
| Conread name: | Ss1.1-rova003_g18.5 |
| Conread position: | 15-253 |
| Cow position: | chr6:47305472-47305236 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 131, 15 |
| Conread position: | 75-253 |
| Cow position: | chr6:59718882-59718693 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 124-258 |
| Cow position: | chr6:46282977-46283108 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 128-249 |
| Cow position: | chr6:20230800-20230930 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 128-253 |
| Cow position: | chr6:61137401-61137272 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 129-253 |
| Cow position: | chr6:24962168-24962046 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 131-254 |
| Cow position: | chr6:61644806-61644940 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 132-253 |
| Cow position: | chr6:607283-607163 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 19 |
| Conread position: | 132-253 |
| Cow position: | chr6:14958320-14958448 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 133-249 |
| Cow position: | chr6:37149210-37149088 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 133-249 |
| Cow position: | chr6:38641518-38641395 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 133-249 |
| Cow position: | chr6:40032212-40032094 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 133-249 |
| Cow position: | chr6:44984351-44984230 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 17 |
| Conread position: | 133-252 |
| Cow position: | chr6:19446274-19446157 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 133-252 |
| Cow position: | chr6:25773364-25773485 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 133-252 |
| Cow position: | chr6:32287659-32287536 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 133-253 |
| Cow position: | chr6:7119598-7119713 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 133-253 |
| Cow position: | chr6:8788016-8788141 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 133-253 |
| Cow position: | chr6:11246787-11246660 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 133-253 |
| Cow position: | chr6:12542909-12543036 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 133-253 |
| Cow position: | chr6:17090623-17090496 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 133-253 |
| Cow position: | chr6:38207468-38207594 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 133-253 |
| Cow position: | chr6:56848892-56849020 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 133-253 |
| Cow position: | chr6:56850038-56849909 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 133-253 |
| Cow position: | chr6:58363987-58364114 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 133-253 |
| Cow position: | chr6:58370779-58370650 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 133-253 |
| Cow position: | chr6:59069603-59069727 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 133-253 |
| Cow position: | chr6:66531800-66531924 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 133-253 |
| Cow position: | chr6:66874373-66874248 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 113 |
| Conread position: | 133-256 |
| Cow position: | chr6:38614840-38614713 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 133-258 |
| Cow position: | chr6:21542344-21542210 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 133-258 |
| Cow position: | chr6:38233980-38233850 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 134-247 |
| Cow position: | chr6:44194529-44194639 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 44, 23 |
| Conread position: | 134-249 |
| Cow position: | chr6:16316326-16316207 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 134-253 |
| Cow position: | chr6:21231548-21231428 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 134-253 |
| Cow position: | chr6:23247942-23248062 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 134-253 |
| Cow position: | chr6:31535549-31535670 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 134-253 |
| Cow position: | chr6:54867537-54867410 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 135-250 |
| Cow position: | chr6:51486434-51486318 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 135-253 |
| Cow position: | chr6:54365309-54365434 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 135-253 |
| Cow position: | chr6:58597487-58597607 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 135-253 |
| Cow position: | chr6:67950974-67950850 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 11, 67 |
| Conread position: | 135-258 |
| Cow position: | chr6:60456848-60456725 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 110 |
| Conread position: | 135-274 |
| Cow position: | chr6:57164448-57164302 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 136-248 |
| Cow position: | chr6:16423720-16423602 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 136-253 |
| Cow position: | chr6:32121925-32121808 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 136-253 |
| Cow position: | chr6:54132834-54132714 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 137-253 |
| Cow position: | chr6:4864529-4864651 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 137-259 |
| Cow position: | chr6:15937833-15937961 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 137-268 |
| Cow position: | chr6:16411209-16411073 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 139-253 |
| Cow position: | chr6:24515179-24515296 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 139-253 |
| Cow position: | chr6:60350277-60350398 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 139-253 |
| Cow position: | chr6:60740033-60739912 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 139-254 |
| Cow position: | chr6:5958009-5958123 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 140-253 |
| Cow position: | chr6:15305591-15305478 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 141-249 |
| Cow position: | chr6:15300811-15300918 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 83, 35 |
| Conread position: | 141-253 |
| Cow position: | chr6:130148-130264 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 141-253 |
| Cow position: | chr6:5609432-5609543 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 141-253 |
| Cow position: | chr6:50984239-50984122 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 142-258 |
| Cow position: | chr6:377142-377021 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 143-253 |
| Cow position: | chr6:19351141-19351257 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 146-249 |
| Cow position: | chr6:38771296-38771187 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 146-253 |
| Cow position: | chr6:17997306-17997418 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 151-258 |
| Cow position: | chr6:603096-602983 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 154-253 |
| Cow position: | chr6:416101-415995 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 155-253 |
| Cow position: | chr6:12623465-12623369 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 172-258 |
| Cow position: | chr6:21590669-21590583 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 75 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.