Cow genome map
| Conread name: | Ss1.1-rpfco0102_k14.5 |
| Conread position: | 8-447 |
| Cow position: | chr13:39930727-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 118, 307 |
| Conread position: | 8-577 |
| Cow position: | chr13:56292366-56291790 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 211 |
| Conread position: | 12-666 |
| Cow position: | chr13:39984235-39984900 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 309 |
| Conread position: | 12-711 |
| Cow position: | chr13:39984151-39984861 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 381 |
| Conread position: | 12-790 |
| Cow position: | chr13:39983983-39984777 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 226 |
| Conread position: | 26-682 |
| Cow position: | chr13:56333645-56334321 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 407 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 105, 228 |
| Conread position: | 87-616 |
| Cow position: | chr13:39930638-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 342 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 39, 67 |
| Conread position: | 126-751 |
| Cow position: | chr13:56292488-56291869 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 280 |
| Conread position: | 131-758 |
| Cow position: | chr13:56292399-56291778 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 131 |
| Conread position: | 133-804 |
| Cow position: | chr13:56292649-56291982 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 423 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 102, 77 |
| Conread position: | 147-705 |
| Cow position: | chr13:56333694-56334260 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 349 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 64, 89 |
| Conread position: | 159-795 |
| Cow position: | chr13:39983890-39984530 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 13 |
| Conread position: | 164-700 |
| Cow position: | chr13:39930643-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 140 |
| Conread position: | 164-757 |
| Cow position: | chr13:56292702-56292113 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 361 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 120, 176 |
| Conread position: | 165-818 |
| Cow position: | chr13:39983812-39984466 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 395 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 109, 155 |
| Conread position: | 165-1110 |
| Cow position: | chr13:39983980-39984919 (view UCSC Genome Browser custom track) |
| Alignm length: | 958 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 181-794 |
| Cow position: | chr13:56292848-56292230 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 383 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 271, 73 |
| Conread position: | 242-749 |
| Cow position: | chr13:56333537-56334043 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 50 |
| Conread position: | 245-757 |
| Cow position: | chr13:39930640-39931151 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 248-717 |
| Cow position: | chr13:24162902-24163370 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 249-757 |
| Cow position: | chr13:56333712-56334230 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 57, 67 |
| Conread position: | 299-740 |
| Cow position: | chr13:24162701-24163141 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 122, 116 |
| Conread position: | 321-681 |
| Cow position: | chr13:24162471-24162830 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 353, 218 |
| Conread position: | 321-702 |
| Cow position: | chr13:22124997-22125377 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 100, 83 |
| Conread position: | 321-730 |
| Cow position: | chr13:22125249-22125657 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 231, 0 |
| Conread position: | 321-751 |
| Cow position: | chr13:22124745-22125174 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 346, 218 |
| Conread position: | 321-751 |
| Cow position: | chr13:39930632-39931061 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 0 |
| Conread position: | 327-780 |
| Cow position: | chr13:24162561-24163013 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 263, 212 |
| Conread position: | 357-751 |
| Cow position: | chr13:39930584-39930977 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 372-770 |
| Cow position: | chr13:22124712-22125109 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 389-770 |
| Cow position: | chr13:24162455-24162835 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 362, 158 |
Show alignments to all cow chromosomes.