Cow genome map

Conread name: Ss1.1-rpfco0102_k14.5

Conread position: 1-699
Cow position: chr14:25794855-25794147 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 70

Conread position: 2-704
Cow position: chr14:25783672-25784385 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 68

Conread position: 2-723
Cow position: chr14:680299-681031 (view UCSC Genome Browser custom track)
Alignm length: 736
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 329

Conread position: 2-771
Cow position: chr14:25794938-25794155 (view UCSC Genome Browser custom track)
Alignm length: 787
Alignm identity: 465
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 129, 221

Conread position: 2-790
Cow position: chr14:25783756-25784560 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 74

Conread position: 3-626
Cow position: chr14:25836544-25837178 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 68

Conread position: 3-704
Cow position: chr14:25895443-25896155 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 430
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 63, 73

Conread position: 8-535
Cow position: chr14:3127856-3127317 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 332
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 118, 232

Conread position: 8-705
Cow position: chr14:25876989-25877697 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 56

Conread position: 8-755
Cow position: chr14:680557-681316 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 414

Conread position: 8-761
Cow position: chr14:25895028-25895792 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 438
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 66

Conread position: 9-711
Cow position: chr14:25895113-25895826 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 426
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 45, 67

Conread position: 11-452
Cow position: chr14:25910832-25911285 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 297
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 43, 63

Conread position: 11-723
Cow position: chr14:3080425-3079702 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 227

Conread position: 11-751
Cow position: chr14:3080509-3079758 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 243

Conread position: 11-751
Cow position: chr14:25836048-25836799 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 307

Conread position: 11-752
Cow position: chr14:3101167-3100420 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 455
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 115, 104

Conread position: 11-809
Cow position: chr14:3080845-3080029 (view UCSC Genome Browser custom track)
Alignm length: 821
Alignm identity: 483
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 53, 65

Conread position: 12-505
Cow position: chr14:25836721-25837226 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 318
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 52, 64

Conread position: 12-590
Cow position: chr14:25836637-25837226 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 360
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 118, 229

Conread position: 12-621
Cow position: chr14:25784270-25784884 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 388
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 118, 226

Conread position: 12-704
Cow position: chr14:25783346-25784049 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 226

Conread position: 12-704
Cow position: chr14:25859774-25860477 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 424
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 122, 234

Conread position: 12-704
Cow position: chr14:25876825-25877528 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 64

Conread position: 12-705
Cow position: chr14:25836469-25837173 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 236

Conread position: 12-705
Cow position: chr14:25859942-25860646 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 427
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 45, 64

Conread position: 12-706
Cow position: chr14:25783514-25784219 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 58

Conread position: 12-707
Cow position: chr14:25860110-25860811 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 421
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 52, 61

Conread position: 12-738
Cow position: chr14:3101082-3100350 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 446
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 114, 22

Conread position: 12-742
Cow position: chr14:25877161-25877900 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 449
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 52, 61

Conread position: 12-749
Cow position: chr14:25877077-25877825 (view UCSC Genome Browser custom track)
Alignm length: 760
Alignm identity: 464
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 54, 61

Conread position: 12-750
Cow position: chr14:3128020-3127271 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 236

Conread position: 12-751
Cow position: chr14:25836385-25837135 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 64

Conread position: 12-761
Cow position: chr14:3080676-3079916 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 225

Conread position: 12-761
Cow position: chr14:3155900-3156651 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 447
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 42, 64

Conread position: 12-761
Cow position: chr14:25836301-25837061 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 543

Conread position: 12-761
Cow position: chr14:25859354-25860114 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 61

Conread position: 12-761
Cow position: chr14:25859522-25860282 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 63

Conread position: 12-761
Cow position: chr14:25876909-25877669 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 63

Conread position: 12-785
Cow position: chr14:25860026-25860809 (view UCSC Genome Browser custom track)
Alignm length: 795
Alignm identity: 475
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 80, 85

Conread position: 12-818
Cow position: chr14:25795432-25794613 (view UCSC Genome Browser custom track)
Alignm length: 825
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 559

Conread position: 13-626
Cow position: chr14:3101333-3100714 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 383
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 111, 274

Conread position: 13-704
Cow position: chr14:25783935-25784637 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 294

Conread position: 13-761
Cow position: chr14:25859187-25859946 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 227

Conread position: 14-705
Cow position: chr14:25795262-25794560 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 313

Conread position: 14-706
Cow position: chr14:25795178-25794475 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 303

Conread position: 14-749
Cow position: chr14:25795094-25794348 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 47

Conread position: 18-790
Cow position: chr14:25795342-25794554 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 41

Conread position: 32-761
Cow position: chr14:25876425-25877165 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 41

Conread position: 36-617
Cow position: chr14:447531-448123 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 367
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 90, 201

Conread position: 76-761
Cow position: chr14:25859167-25859862 (view UCSC Genome Browser custom track)
Alignm length: 704
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 9

Conread position: 81-620
Cow position: chr14:25910738-25911284 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 349
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 45, 156

Conread position: 132-761
Cow position: chr14:25836097-25836725 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 97

Conread position: 133-626
Cow position: chr14:3100786-3100285 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 310
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 91, 78

Conread position: 137-722
Cow position: chr14:3080959-3080375 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 116

Conread position: 147-701
Cow position: chr14:3101438-3100889 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 79

Conread position: 153-761
Cow position: chr14:25835782-25836389 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 377
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 67, 76

Conread position: 164-751
Cow position: chr14:25876233-25876819 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 341
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 82, 74

Conread position: 165-595
Cow position: chr14:3155408-3155837 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 271
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 43, 58

Conread position: 165-661
Cow position: chr14:3155981-3156476 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 61

Conread position: 165-689
Cow position: chr14:447588-448111 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 315
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 226, 235

Conread position: 165-711
Cow position: chr14:25910750-25911291 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 344
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 56, 40

Conread position: 165-743
Cow position: chr14:3128023-3127446 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 0

Conread position: 165-751
Cow position: chr14:25895701-25896286 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 335
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 63

Conread position: 167-704
Cow position: chr14:25795433-25794897 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 334
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 136, 119

Conread position: 167-761
Cow position: chr14:3128105-3127512 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 0

Conread position: 168-723
Cow position: chr14:3155900-3156454 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 58

Conread position: 177-790
Cow position: chr14:3128179-3127562 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 55

Conread position: 241-761
Cow position: chr14:25859175-25859694 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 0

Conread position: 245-704
Cow position: chr14:25895025-25895483 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 280
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 72, 65

Conread position: 249-679
Cow position: chr14:3155408-3155837 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 264
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 230, 235

Conread position: 314-798
Cow position: chr14:25783324-25783810 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 312
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 152, 145

Conread position: 321-761
Cow position: chr14:447576-448015 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 275
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 216, 0

Conread position: 331-737
Cow position: chr14:25894943-25895348 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 246
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 146, 153

Conread position: 334-761
Cow position: chr14:447505-447931 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 260
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 213, 0

Conread position: 335-751
Cow position: chr14:680392-680807 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 253
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 245, 212

Conread position: 336-702
Cow position: chr14:447675-448040 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 242
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 211, 0

Conread position: 336-751
Cow position: chr14:680309-680723 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 251
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 312, 198

Conread position: 336-785
Cow position: chr14:3155900-3156352 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 281
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 385, 217

Conread position: 351-723
Cow position: chr14:3080913-3080542 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 236
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 32, 28

Conread position: 357-679
Cow position: chr14:420584-420903 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 202
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 359-751
Cow position: chr14:25895559-25895950 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 239
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 164, 170

Conread position: 386-704
Cow position: chr14:25783312-25783629 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 206
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 153, 173

Conread position: 417-757
Cow position: chr14:3155408-3155747 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 220
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 301, 130

Conread position: 483-762
Cow position: chr14:3101438-3101161 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 183
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 67, 76

Conread position: 489-750
Cow position: chr14:420630-420890 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 169
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 150, 48

Conread position: 501-760
Cow position: chr14:3155408-3155666 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 168
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 222, 52

Show alignments to all cow chromosomes.