Cow genome map


           Conread name:
           Ss1.1-rpfco0102_k14.5
        

               Conread position:
               1-699
               

               Cow position:
               
               

               Alignm length:
               715
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 70
               

               Conread position:
               2-704
               

               Cow position:
               
               

               Alignm length:
               721
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 68
               

               Conread position:
               2-723
               

               Cow position:
               
               

               Alignm length:
               736
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 329
               

               Conread position:
               2-771
               

               Cow position:
               
               

               Alignm length:
               787
               

               Alignm identity:
               465
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               129, 221
               

               Conread position:
               2-790
               

               Cow position:
               
               

               Alignm length:
               813
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 74
               

               Conread position:
               3-626
               

               Cow position:
               
               

               Alignm length:
               639
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 68
               

               Conread position:
               3-704
               

               Cow position:
               
               

               Alignm length:
               721
               

               Alignm identity:
               430
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               63, 73
               

               Conread position:
               8-535
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               332
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               118, 232
               

               Conread position:
               8-705
               

               Cow position:
               
               

               Alignm length:
               713
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 56
               

               Conread position:
               8-755
               

               Cow position:
               
               

               Alignm length:
               764
               

               Alignm identity:
               468
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 414
               

               Conread position:
               8-761
               

               Cow position:
               
               

               Alignm length:
               769
               

               Alignm identity:
               438
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               61, 66
               

               Conread position:
               9-711
               

               Cow position:
               
               

               Alignm length:
               721
               

               Alignm identity:
               426
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               45, 67
               

               Conread position:
               11-452
               

               Cow position:
               
               

               Alignm length:
               458
               

               Alignm identity:
               297
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               43, 63
               

               Conread position:
               11-723
               

               Cow position:
               
               

               Alignm length:
               726
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 227
               

               Conread position:
               11-751
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 243
               

               Conread position:
               11-751
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 307
               

               Conread position:
               11-752
               

               Cow position:
               
               

               Alignm length:
               759
               

               Alignm identity:
               455
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               115, 104
               

               Conread position:
               11-809
               

               Cow position:
               
               

               Alignm length:
               821
               

               Alignm identity:
               483
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               53, 65
               

               Conread position:
               12-505
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               318
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               52, 64
               

               Conread position:
               12-590
               

               Cow position:
               
               

               Alignm length:
               594
               

               Alignm identity:
               360
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               118, 229
               

               Conread position:
               12-621
               

               Cow position:
               
               

               Alignm length:
               630
               

               Alignm identity:
               388
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               118, 226
               

               Conread position:
               12-704
               

               Cow position:
               
               

               Alignm length:
               708
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 226
               

               Conread position:
               12-704
               

               Cow position:
               
               

               Alignm length:
               707
               

               Alignm identity:
               424
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               122, 234
               

               Conread position:
               12-704
               

               Cow position:
               
               

               Alignm length:
               707
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 64
               

               Conread position:
               12-705
               

               Cow position:
               
               

               Alignm length:
               708
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 236
               

               Conread position:
               12-705
               

               Cow position:
               
               

               Alignm length:
               711
               

               Alignm identity:
               427
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               45, 64
               

               Conread position:
               12-706
               

               Cow position:
               
               

               Alignm length:
               713
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 58
               

               Conread position:
               12-707
               

               Cow position:
               
               

               Alignm length:
               712
               

               Alignm identity:
               421
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               52, 61
               

               Conread position:
               12-738
               

               Cow position:
               
               

               Alignm length:
               743
               

               Alignm identity:
               446
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               114, 22
               

               Conread position:
               12-742
               

               Cow position:
               
               

               Alignm length:
               748
               

               Alignm identity:
               449
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               52, 61
               

               Conread position:
               12-749
               

               Cow position:
               
               

               Alignm length:
               760
               

               Alignm identity:
               464
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               54, 61
               

               Conread position:
               12-750
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 236
               

               Conread position:
               12-751
               

               Cow position:
               
               

               Alignm length:
               757
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 64
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               763
               

               Alignm identity:
               460
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 225
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               763
               

               Alignm identity:
               447
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               42, 64
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               764
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 543
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               770
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 61
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               768
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 63
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               766
               

               Alignm identity:
               460
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 63
               

               Conread position:
               12-785
               

               Cow position:
               
               

               Alignm length:
               795
               

               Alignm identity:
               475
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               80, 85
               

               Conread position:
               12-818
               

               Cow position:
               
               

               Alignm length:
               825
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 559
               

               Conread position:
               13-626
               

               Cow position:
               
               

               Alignm length:
               628
               

               Alignm identity:
               383
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               111, 274
               

               Conread position:
               13-704
               

               Cow position:
               
               

               Alignm length:
               705
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 294
               

               Conread position:
               13-761
               

               Cow position:
               
               

               Alignm length:
               769
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 227
               

               Conread position:
               14-705
               

               Cow position:
               
               

               Alignm length:
               707
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 313
               

               Conread position:
               14-706
               

               Cow position:
               
               

               Alignm length:
               710
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 303
               

               Conread position:
               14-749
               

               Cow position:
               
               

               Alignm length:
               751
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 47
               

               Conread position:
               18-790
               

               Cow position:
               
               

               Alignm length:
               793
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 41
               

               Conread position:
               32-761
               

               Cow position:
               
               

               Alignm length:
               750
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 41
               

               Conread position:
               36-617
               

               Cow position:
               
               

               Alignm length:
               596
               

               Alignm identity:
               367
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               90, 201
               

               Conread position:
               76-761
               

               Cow position:
               
               

               Alignm length:
               704
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 9
               

               Conread position:
               81-620
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               349
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               45, 156
               

               Conread position:
               132-761
               

               Cow position:
               
               

               Alignm length:
               632
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 97
               

               Conread position:
               133-626
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               310
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               91, 78
               

               Conread position:
               137-722
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 116
               

               Conread position:
               147-701
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 79
               

               Conread position:
               153-761
               

               Cow position:
               
               

               Alignm length:
               617
               

               Alignm identity:
               377
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               67, 76
               

               Conread position:
               164-751
               

               Cow position:
               
               

               Alignm length:
               591
               

               Alignm identity:
               341
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               82, 74
               

               Conread position:
               165-595
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               271
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               43, 58
               

               Conread position:
               165-661
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 61
               

               Conread position:
               165-689
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               315
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               226, 235
               

               Conread position:
               165-711
               

               Cow position:
               
               

               Alignm length:
               555
               

               Alignm identity:
               344
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               56, 40
               

               Conread position:
               165-743
               

               Cow position:
               
               

               Alignm length:
               579
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               382, 0
               

               Conread position:
               165-751
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               335
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               45, 63
               

               Conread position:
               167-704
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               334
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               136, 119
               

               Conread position:
               167-761
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               380, 0
               

               Conread position:
               168-723
               

               Cow position:
               
               

               Alignm length:
               560
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 58
               

               Conread position:
               177-790
               

               Cow position:
               
               

               Alignm length:
               623
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 55
               

               Conread position:
               241-761
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               298, 0
               

               Conread position:
               245-704
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               280
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               72, 65
               

               Conread position:
               249-679
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               230, 235
               

               Conread position:
               314-798
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               312
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               152, 145
               

               Conread position:
               321-761
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               275
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               216, 0
               

               Conread position:
               331-737
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               146, 153
               

               Conread position:
               334-761
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               213, 0
               

               Conread position:
               335-751
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               245, 212
               

               Conread position:
               336-702
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               242
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               211, 0
               

               Conread position:
               336-751
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               251
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               312, 198
               

               Conread position:
               336-785
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               281
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               385, 217
               

               Conread position:
               351-723
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               236
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               32, 28
               

               Conread position:
               357-679
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               359-751
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               164, 170
               

               Conread position:
               386-704
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               206
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               153, 173
               

               Conread position:
               417-757
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               301, 130
               

               Conread position:
               483-762
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               67, 76
               

               Conread position:
               489-750
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               150, 48
               

               Conread position:
               501-760
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               222, 52
               
Show alignments to all cow chromosomes.