Cow genome map
| Conread name: | Ss1.1-rpfco0102_k14.5 |
| Conread position: | 1-789 |
| Cow position: | chr17:22553113-22552310 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 550 |
| Conread position: | 2-425 |
| Cow position: | chr17:22589606-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 123, 223 |
| Conread position: | 2-699 |
| Cow position: | chr17:22552188-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 320 |
| Conread position: | 2-749 |
| Cow position: | chr17:22552272-22551514 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 2-761 |
| Cow position: | chr17:22590194-22589424 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 40 |
| Conread position: | 3-760 |
| Cow position: | chr17:22552439-22551671 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 234 |
| Conread position: | 3-768 |
| Cow position: | chr17:22589941-22589166 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 469 |
| Conread position: | 8-704 |
| Cow position: | chr17:22553021-22552315 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 13 |
| Conread position: | 11-363 |
| Cow position: | chr17:22473587-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 119, 305 |
| Conread position: | 11-706 |
| Cow position: | chr17:22499394-22498688 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 464 |
| Conread position: | 11-751 |
| Cow position: | chr17:22473173-22473918 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 28 |
| Conread position: | 12-537 |
| Cow position: | chr17:22452211-22451674 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 337 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 12-543 |
| Cow position: | chr17:22473420-22473966 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 12-751 |
| Cow position: | chr17:22499309-22498559 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 295 |
| Conread position: | 12-756 |
| Cow position: | chr17:22552766-22552009 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 303 |
| Conread position: | 12-808 |
| Cow position: | chr17:22552514-22551700 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 12-808 |
| Cow position: | chr17:22552934-22552120 (view UCSC Genome Browser custom track) |
| Alignm length: | 816 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 544 |
| Conread position: | 12-809 |
| Cow position: | chr17:22552346-22551531 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 13-688 |
| Cow position: | chr17:22499224-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 243 |
| Conread position: | 22-700 |
| Cow position: | chr17:22473262-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 64 |
| Conread position: | 67-757 |
| Cow position: | chr17:22452408-22451705 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 171 |
| Conread position: | 132-705 |
| Cow position: | chr17:22590304-22589732 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 92 |
| Conread position: | 132-757 |
| Cow position: | chr17:22553054-22552428 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 132-804 |
| Cow position: | chr17:22590220-22589547 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 580, 412 |
| Conread position: | 138-705 |
| Cow position: | chr17:22452409-22451843 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 84 |
| Conread position: | 148-790 |
| Cow position: | chr17:22553122-22552476 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 331 |
| Conread position: | 168-790 |
| Cow position: | chr17:22499393-22498767 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 178-784 |
| Cow position: | chr17:22473262-22473871 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 48 |
| Conread position: | 249-790 |
| Cow position: | chr17:22452382-22451837 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 48 |
| Conread position: | 312-757 |
| Cow position: | chr17:22553126-22552680 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 438, 227 |
| Conread position: | 389-751 |
| Cow position: | chr17:22452410-22452049 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 528-761 |
| Cow position: | chr17:22553162-22552930 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 568-809 |
| Cow position: | chr17:22590289-22590041 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 67, 56 |
Show alignments to all cow chromosomes.