Cow genome map


           Conread name:
           Ss1.1-rpfco0102_k14.5
        

               Conread position:
               3-705
               

               Cow position:
               
               

               Alignm length:
               717
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 238
               

               Conread position:
               3-751
               

               Cow position:
               
               

               Alignm length:
               763
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 91
               

               Conread position:
               3-789
               

               Cow position:
               
               

               Alignm length:
               808
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 62
               

               Conread position:
               8-422
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               257
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               118, 268
               

               Conread position:
               9-785
               

               Cow position:
               
               

               Alignm length:
               793
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 535
               

               Conread position:
               9-790
               

               Cow position:
               
               

               Alignm length:
               802
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 321
               

               Conread position:
               10-783
               

               Cow position:
               
               

               Alignm length:
               793
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 66
               

               Conread position:
               11-513
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 221
               

               Conread position:
               11-513
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 464
               

               Conread position:
               11-750
               

               Cow position:
               
               

               Alignm length:
               752
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 545
               

               Conread position:
               11-761
               

               Cow position:
               
               

               Alignm length:
               768
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 288
               

               Conread position:
               11-828
               

               Cow position:
               
               

               Alignm length:
               832
               

               Alignm identity:
               517
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 95
               

               Conread position:
               12-502
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               300
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               114, 151
               

               Conread position:
               12-562
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               354
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               114, 222
               

               Conread position:
               12-684
               

               Cow position:
               
               

               Alignm length:
               688
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 66
               

               Conread position:
               12-719
               

               Cow position:
               
               

               Alignm length:
               721
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 400
               

               Conread position:
               12-751
               

               Cow position:
               
               

               Alignm length:
               753
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 259
               

               Conread position:
               12-751
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 316
               

               Conread position:
               12-760
               

               Cow position:
               
               

               Alignm length:
               763
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 558
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               766
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 303
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               764
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 341
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               768
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 41
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               764
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 308
               

               Conread position:
               12-784
               

               Cow position:
               
               

               Alignm length:
               792
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 297
               

               Conread position:
               12-784
               

               Cow position:
               
               

               Alignm length:
               791
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 460
               

               Conread position:
               12-784
               

               Cow position:
               
               

               Alignm length:
               789
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 538
               

               Conread position:
               12-785
               

               Cow position:
               
               

               Alignm length:
               791
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 544
               

               Conread position:
               12-789
               

               Cow position:
               
               

               Alignm length:
               796
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 226
               

               Conread position:
               13-626
               

               Cow position:
               
               

               Alignm length:
               626
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 237
               

               Conread position:
               14-696
               

               Cow position:
               
               

               Alignm length:
               702
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 56
               

               Conread position:
               15-646
               

               Cow position:
               
               

               Alignm length:
               647
               

               Alignm identity:
               392
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               24, 34
               

               Conread position:
               20-682
               

               Cow position:
               
               

               Alignm length:
               675
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 531
               

               Conread position:
               36-622
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 33
               

               Conread position:
               75-538
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               304
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               51, 251
               

               Conread position:
               131-816
               

               Cow position:
               
               

               Alignm length:
               690
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               498, 272
               

               Conread position:
               131-818
               

               Cow position:
               
               

               Alignm length:
               694
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               174, 178
               

               Conread position:
               132-510
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               132-749
               

               Cow position:
               
               

               Alignm length:
               621
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 95
               

               Conread position:
               132-761
               

               Cow position:
               
               

               Alignm length:
               631
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 25
               

               Conread position:
               132-761
               

               Cow position:
               
               

               Alignm length:
               631
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               338, 55
               

               Conread position:
               157-761
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               367
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               313, 173
               

               Conread position:
               159-761
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 67
               

               Conread position:
               164-761
               

               Cow position:
               
               

               Alignm length:
               598
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               323, 0
               

               Conread position:
               165-711
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               288, 297
               

               Conread position:
               167-761
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               367, 0
               

               Conread position:
               167-790
               

               Cow position:
               
               

               Alignm length:
               631
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 130
               

               Conread position:
               171-791
               

               Cow position:
               
               

               Alignm length:
               629
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 293
               

               Conread position:
               235-705
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               297
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               329, 80
               

               Conread position:
               249-754
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               476, 305
               

               Conread position:
               250-785
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 17
               

               Conread position:
               255-706
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               282
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               28, 56
               

               Conread position:
               309-749
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               331-809
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 133
               

               Conread position:
               343-757
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               179, 186
               

               Conread position:
               409-761
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               413-761
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               229, 66
               

               Conread position:
               417-785
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               246
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               36, 46
               
Show alignments to all cow chromosomes.