Cow genome map
| Conread name: | Ss1.1-rpfco0102_k14.5 |
| Conread position: | 3-705 |
| Cow position: | chr19:23614182-23614895 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 238 |
| Conread position: | 3-751 |
| Cow position: | chr19:23596942-23597698 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 91 |
| Conread position: | 3-789 |
| Cow position: | chr19:20677945-20678744 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 62 |
| Conread position: | 8-422 |
| Cow position: | chr19:14959243-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 118, 268 |
| Conread position: | 9-785 |
| Cow position: | chr19:23613852-23614643 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 535 |
| Conread position: | 9-790 |
| Cow position: | chr19:20677531-20678328 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 321 |
| Conread position: | 10-783 |
| Cow position: | chr19:23613601-23614389 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 66 |
| Conread position: | 11-513 |
| Cow position: | chr19:23597199-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 221 |
| Conread position: | 11-513 |
| Cow position: | chr19:43570222-43569710 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 464 |
| Conread position: | 11-750 |
| Cow position: | chr19:14940326-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 545 |
| Conread position: | 11-761 |
| Cow position: | chr19:23614022-23614783 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 288 |
| Conread position: | 11-828 |
| Cow position: | chr19:14959805-14958999 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 95 |
| Conread position: | 12-502 |
| Cow position: | chr19:23649977-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 300 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 114, 151 |
| Conread position: | 12-562 |
| Cow position: | chr19:23649893-23650454 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 354 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 114, 222 |
| Conread position: | 12-684 |
| Cow position: | chr19:20635630-20634950 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 12-719 |
| Cow position: | chr19:23649725-23650443 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 400 |
| Conread position: | 12-751 |
| Cow position: | chr19:14959566-14958831 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 259 |
| Conread position: | 12-751 |
| Cow position: | chr19:23649389-23650139 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 316 |
| Conread position: | 12-760 |
| Cow position: | chr19:23649557-23650318 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 558 |
| Conread position: | 12-761 |
| Cow position: | chr19:14940243-14941003 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 303 |
| Conread position: | 12-761 |
| Cow position: | chr19:14960138-14959394 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 341 |
| Conread position: | 12-761 |
| Cow position: | chr19:23614359-23615117 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 12-761 |
| Cow position: | chr19:23649473-23650233 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 308 |
| Conread position: | 12-784 |
| Cow position: | chr19:20677702-20678489 (view UCSC Genome Browser custom track) |
| Alignm length: | 792 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 297 |
| Conread position: | 12-784 |
| Cow position: | chr19:20677870-20678657 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 460 |
| Conread position: | 12-784 |
| Cow position: | chr19:23613351-23614138 (view UCSC Genome Browser custom track) |
| Alignm length: | 789 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 538 |
| Conread position: | 12-785 |
| Cow position: | chr19:14940159-14940947 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 544 |
| Conread position: | 12-789 |
| Cow position: | chr19:23613771-23614563 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 226 |
| Conread position: | 13-626 |
| Cow position: | chr19:14960387-14959767 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 237 |
| Conread position: | 14-696 |
| Cow position: | chr19:23614445-23615136 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 15-646 |
| Cow position: | chr19:23649812-23650454 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 392 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 20-682 |
| Cow position: | chr19:23597040-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 531 |
| Conread position: | 36-622 |
| Cow position: | chr19:43570278-43569688 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 33 |
| Conread position: | 75-538 |
| Cow position: | chr19:14948484-14948010 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 51, 251 |
| Conread position: | 131-816 |
| Cow position: | chr19:14960425-14959742 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 498, 272 |
| Conread position: | 131-818 |
| Cow position: | chr19:23613398-23614086 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 178 |
| Conread position: | 132-510 |
| Cow position: | chr19:14959191-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 132-749 |
| Cow position: | chr19:14940039-14940655 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 95 |
| Conread position: | 132-761 |
| Cow position: | chr19:23613315-23613943 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 132-761 |
| Cow position: | chr19:43570331-43569715 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 55 |
| Conread position: | 157-761 |
| Cow position: | chr19:23596856-23597456 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 367 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 313, 173 |
| Conread position: | 159-761 |
| Cow position: | chr19:43570388-43569797 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 164-761 |
| Cow position: | chr19:14960476-14959882 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 0 |
| Conread position: | 165-711 |
| Cow position: | chr19:20635633-20635088 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 297 |
| Conread position: | 167-761 |
| Cow position: | chr19:23649388-23649981 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 0 |
| Conread position: | 167-790 |
| Cow position: | chr19:20677533-20678160 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 130 |
| Conread position: | 171-791 |
| Cow position: | chr19:20677453-20678077 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 293 |
| Conread position: | 235-705 |
| Cow position: | chr19:14948480-14948012 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 329, 80 |
| Conread position: | 249-754 |
| Cow position: | chr19:23649302-23649808 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 476, 305 |
| Conread position: | 250-785 |
| Cow position: | chr19:20635715-20635178 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 255-706 |
| Cow position: | chr19:14915967-14916414 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 309-749 |
| Cow position: | chr19:14939965-14940403 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 331-809 |
| Cow position: | chr19:14960477-14959995 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 133 |
| Conread position: | 343-757 |
| Cow position: | chr19:20677373-20677786 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 179, 186 |
| Conread position: | 409-761 |
| Cow position: | chr19:23649294-23649645 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 413-761 |
| Cow position: | chr19:14948470-14948124 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 229, 66 |
| Conread position: | 417-785 |
| Cow position: | chr19:14939988-14940359 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 246 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 36, 46 |
Show alignments to all cow chromosomes.