Cow genome map


           Conread name:
           Ss1.1-rpfco0102_k14.5
        

               Conread position:
               2-536
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 55
               

               Conread position:
               2-743
               

               Cow position:
               
               

               Alignm length:
               764
               

               Alignm identity:
               449
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               54, 72
               

               Conread position:
               2-751
               

               Cow position:
               
               

               Alignm length:
               767
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 71
               

               Conread position:
               2-761
               

               Cow position:
               
               

               Alignm length:
               774
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 68
               

               Conread position:
               2-761
               

               Cow position:
               
               

               Alignm length:
               775
               

               Alignm identity:
               510
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 40
               

               Conread position:
               3-749
               

               Cow position:
               
               

               Alignm length:
               763
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 68
               

               Conread position:
               3-762
               

               Cow position:
               
               

               Alignm length:
               778
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 68
               

               Conread position:
               3-789
               

               Cow position:
               
               

               Alignm length:
               808
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 231
               

               Conread position:
               10-704
               

               Cow position:
               
               

               Alignm length:
               714
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 158
               

               Conread position:
               10-749
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 66
               

               Conread position:
               11-284
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               11-492
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               302
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               115, 227
               

               Conread position:
               11-519
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               339
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               43, 60
               

               Conread position:
               11-584
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               361
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               119, 230
               

               Conread position:
               11-598
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 59
               

               Conread position:
               11-598
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 59
               

               Conread position:
               11-644
               

               Cow position:
               
               

               Alignm length:
               649
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 152
               

               Conread position:
               11-705
               

               Cow position:
               
               

               Alignm length:
               707
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 540
               

               Conread position:
               11-705
               

               Cow position:
               
               

               Alignm length:
               709
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 59
               

               Conread position:
               11-749
               

               Cow position:
               
               

               Alignm length:
               757
               

               Alignm identity:
               472
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 31
               

               Conread position:
               11-812
               

               Cow position:
               
               

               Alignm length:
               822
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 60
               

               Conread position:
               12-496
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               311
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               12-644
               

               Cow position:
               
               

               Alignm length:
               646
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 294
               

               Conread position:
               12-674
               

               Cow position:
               
               

               Alignm length:
               677
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 556
               

               Conread position:
               12-677
               

               Cow position:
               
               

               Alignm length:
               680
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 224
               

               Conread position:
               12-701
               

               Cow position:
               
               

               Alignm length:
               706
               

               Alignm identity:
               419
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               114, 304
               

               Conread position:
               12-711
               

               Cow position:
               
               

               Alignm length:
               716
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 63
               

               Conread position:
               12-714
               

               Cow position:
               
               

               Alignm length:
               719
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 42
               

               Conread position:
               12-751
               

               Cow position:
               
               

               Alignm length:
               753
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 547
               

               Conread position:
               12-757
               

               Cow position:
               
               

               Alignm length:
               760
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 314
               

               Conread position:
               12-790
               

               Cow position:
               
               

               Alignm length:
               798
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 314
               

               Conread position:
               12-793
               

               Cow position:
               
               

               Alignm length:
               801
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 314
               

               Conread position:
               12-816
               

               Cow position:
               
               

               Alignm length:
               829
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 58
               

               Conread position:
               13-682
               

               Cow position:
               
               

               Alignm length:
               686
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 57
               

               Conread position:
               13-682
               

               Cow position:
               
               

               Alignm length:
               686
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 57
               

               Conread position:
               13-793
               

               Cow position:
               
               

               Alignm length:
               803
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 42
               

               Conread position:
               14-537
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               333
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               39, 57
               

               Conread position:
               14-674
               

               Cow position:
               
               

               Alignm length:
               679
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 56
               

               Conread position:
               14-806
               

               Cow position:
               
               

               Alignm length:
               814
               

               Alignm identity:
               519
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 62
               

               Conread position:
               18-751
               

               Cow position:
               
               

               Alignm length:
               748
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 369
               

               Conread position:
               20-581
               

               Cow position:
               
               

               Alignm length:
               574
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 541
               

               Conread position:
               21-711
               

               Cow position:
               
               

               Alignm length:
               706
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 298
               

               Conread position:
               21-751
               

               Cow position:
               
               

               Alignm length:
               744
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 525
               

               Conread position:
               21-751
               

               Cow position:
               
               

               Alignm length:
               745
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 306
               

               Conread position:
               23-704
               

               Cow position:
               
               

               Alignm length:
               699
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 47
               

               Conread position:
               24-704
               

               Cow position:
               
               

               Alignm length:
               703
               

               Alignm identity:
               416
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               66, 74
               

               Conread position:
               25-756
               

               Cow position:
               
               

               Alignm length:
               743
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 207
               

               Conread position:
               68-787
               

               Cow position:
               
               

               Alignm length:
               741
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 260
               

               Conread position:
               108-705
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               364
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               21, 41
               

               Conread position:
               132-626
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               287
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               321, 334
               

               Conread position:
               133-751
               

               Cow position:
               
               

               Alignm length:
               622
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 330
               

               Conread position:
               137-751
               

               Cow position:
               
               

               Alignm length:
               615
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               397, 0
               

               Conread position:
               138-646
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 88
               

               Conread position:
               158-711
               

               Cow position:
               
               

               Alignm length:
               563
               

               Alignm identity:
               351
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               290, 314
               

               Conread position:
               164-761
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 33
               

               Conread position:
               165-751
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               394, 379
               

               Conread position:
               165-761
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               368
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               134, 121
               

               Conread position:
               165-761
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 64
               

               Conread position:
               169-761
               

               Cow position:
               
               

               Alignm length:
               594
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               547, 378
               

               Conread position:
               171-690
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 54
               

               Conread position:
               176-705
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               324
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               129, 112
               

               Conread position:
               180-705
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               315
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               326, 306
               

               Conread position:
               194-770
               

               Cow position:
               
               

               Alignm length:
               585
               

               Alignm identity:
               363
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               48, 42
               

               Conread position:
               247-750
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 231
               

               Conread position:
               253-711
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               298
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               49, 56
               

               Conread position:
               253-789
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 159
               

               Conread position:
               255-761
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               469, 288
               

               Conread position:
               308-751
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               310-701
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 12
               

               Conread position:
               315-750
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               269
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               84, 70
               

               Conread position:
               315-761
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               286
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               90, 95
               

               Conread position:
               338-705
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               229
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               315, 211
               

               Conread position:
               338-761
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               269
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               139, 122
               

               Conread position:
               344-704
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               199, 0
               

               Conread position:
               377-761
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               252
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               46, 40
               

               Conread position:
               383-749
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               243
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               49, 53
               

               Conread position:
               398-785
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               257
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               240, 139
               

               Conread position:
               413-790
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               162, 132
               

               Conread position:
               428-715
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               195, 122
               

               Conread position:
               479-723
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               68, 0
               
Show alignments to all cow chromosomes.