Cow genome map
| Conread name: | Ss1.1-rpfco0102_k14.5 |
| Conread position: | 2-536 |
| Cow position: | chr22:12385509-12384961 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 2-743 |
| Cow position: | chr22:12544572-12545324 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 449 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 2-751 |
| Cow position: | chr22:11640681-11641441 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 2-761 |
| Cow position: | chr22:12476062-12475292 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 2-761 |
| Cow position: | chr22:12499197-12499967 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 3-749 |
| Cow position: | chr22:12431412-12430655 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 3-762 |
| Cow position: | chr22:12432336-12431566 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 3-789 |
| Cow position: | chr22:12432168-12431367 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 231 |
| Conread position: | 10-704 |
| Cow position: | chr22:12432079-12431372 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 158 |
| Conread position: | 10-749 |
| Cow position: | chr22:12385669-12384917 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 11-284 |
| Cow position: | chr22:11701353-11701638 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 11-492 |
| Cow position: | chr22:12418943-12418450 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 115, 227 |
| Conread position: | 11-519 |
| Cow position: | chr22:11640942-11641463 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 339 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 11-584 |
| Cow position: | chr22:12431152-12430568 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 361 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 119, 230 |
| Conread position: | 11-598 |
| Cow position: | chr22:12475885-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 59 |
| Conread position: | 11-598 |
| Cow position: | chr22:12499374-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 59 |
| Conread position: | 11-644 |
| Cow position: | chr22:12399424-12398780 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 152 |
| Conread position: | 11-705 |
| Cow position: | chr22:12431656-12430951 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 540 |
| Conread position: | 11-705 |
| Cow position: | chr22:12432244-12431539 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 59 |
| Conread position: | 11-749 |
| Cow position: | chr22:12431320-12430571 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 11-812 |
| Cow position: | chr22:12432412-12431593 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 12-496 |
| Cow position: | chr22:12399255-12398759 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 12-644 |
| Cow position: | chr22:12431235-12430592 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 294 |
| Conread position: | 12-674 |
| Cow position: | chr22:12385583-12384908 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 556 |
| Conread position: | 12-677 |
| Cow position: | chr22:46654182-46654859 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 224 |
| Conread position: | 12-701 |
| Cow position: | chr22:14430319-14431012 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 419 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 114, 304 |
| Conread position: | 12-711 |
| Cow position: | chr22:46654098-46654808 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 63 |
| Conread position: | 12-714 |
| Cow position: | chr22:14429899-14430612 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 42 |
| Conread position: | 12-751 |
| Cow position: | chr22:12399591-12398841 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 547 |
| Conread position: | 12-757 |
| Cow position: | chr22:12431739-12430983 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 314 |
| Conread position: | 12-790 |
| Cow position: | chr22:12476304-12475510 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 314 |
| Conread position: | 12-793 |
| Cow position: | chr22:12498955-12499752 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 314 |
| Conread position: | 12-816 |
| Cow position: | chr22:14429815-14430633 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 13-682 |
| Cow position: | chr22:12475967-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 13-682 |
| Cow position: | chr22:12499292-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 13-793 |
| Cow position: | chr22:12432494-12431698 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 14-537 |
| Cow position: | chr22:11701104-11701639 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 333 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 39, 57 |
| Conread position: | 14-674 |
| Cow position: | chr22:12458437-12457764 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 14-806 |
| Cow position: | chr22:12399757-12398949 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 18-751 |
| Cow position: | chr22:12399837-12399093 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 369 |
| Conread position: | 20-581 |
| Cow position: | chr22:12419018-12418446 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 541 |
| Conread position: | 21-711 |
| Cow position: | chr22:12458598-12457897 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 298 |
| Conread position: | 21-751 |
| Cow position: | chr22:12476379-12475638 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 525 |
| Conread position: | 21-751 |
| Cow position: | chr22:12498880-12499621 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 306 |
| Conread position: | 23-704 |
| Cow position: | chr22:46654025-46654717 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 47 |
| Conread position: | 24-704 |
| Cow position: | chr22:14441889-14442580 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 416 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 74 |
| Conread position: | 25-756 |
| Cow position: | chr22:12399908-12399170 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 207 |
| Conread position: | 68-787 |
| Cow position: | chr22:12385695-12384959 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 260 |
| Conread position: | 108-705 |
| Cow position: | chr22:14467916-14468512 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 364 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 132-626 |
| Cow position: | chr22:11701150-11701643 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 287 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 321, 334 |
| Conread position: | 133-751 |
| Cow position: | chr22:12458558-12457941 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 330 |
| Conread position: | 137-751 |
| Cow position: | chr22:12476419-12475806 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 0 |
| Conread position: | 138-646 |
| Cow position: | chr22:12418972-12418465 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 88 |
| Conread position: | 158-711 |
| Cow position: | chr22:14429721-14430273 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 351 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 290, 314 |
| Conread position: | 164-761 |
| Cow position: | chr22:12432499-12431903 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 165-751 |
| Cow position: | chr22:12498868-12499453 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 379 |
| Conread position: | 165-761 |
| Cow position: | chr22:14429644-14430239 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 368 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 134, 121 |
| Conread position: | 165-761 |
| Cow position: | chr22:46654095-46654690 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 169-761 |
| Cow position: | chr22:12458606-12458015 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 547, 378 |
| Conread position: | 171-690 |
| Cow position: | chr22:12419023-12418505 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 176-705 |
| Cow position: | chr22:11701110-11701638 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 129, 112 |
| Conread position: | 180-705 |
| Cow position: | chr22:14441889-14442413 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 326, 306 |
| Conread position: | 194-770 |
| Cow position: | chr22:46653956-46654535 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 363 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 42 |
| Conread position: | 247-750 |
| Cow position: | chr22:12432500-12431998 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 231 |
| Conread position: | 253-711 |
| Cow position: | chr22:14467977-14468434 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 298 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 253-789 |
| Cow position: | chr22:12385666-12385125 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 159 |
| Conread position: | 255-761 |
| Cow position: | chr22:12419023-12418518 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 469, 288 |
| Conread position: | 308-751 |
| Cow position: | chr22:12458635-12458193 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 310-701 |
| Cow position: | chr22:12498845-12499235 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 315-750 |
| Cow position: | chr22:11666511-11666945 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 70 |
| Conread position: | 315-761 |
| Cow position: | chr22:11640670-11641115 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 90, 95 |
| Conread position: | 338-705 |
| Cow position: | chr22:11701104-11701470 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 315, 211 |
| Conread position: | 338-761 |
| Cow position: | chr22:11666450-11666872 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 139, 122 |
| Conread position: | 344-704 |
| Cow position: | chr22:12419018-12418659 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 377-761 |
| Cow position: | chr22:12385710-12385325 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 383-749 |
| Cow position: | chr22:12498834-12499199 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 398-785 |
| Cow position: | chr22:12476410-12476020 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 240, 139 |
| Conread position: | 413-790 |
| Cow position: | chr22:14429640-14430021 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 162, 132 |
| Conread position: | 428-715 |
| Cow position: | chr22:11701110-11701396 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 195, 122 |
| Conread position: | 479-723 |
| Cow position: | chr22:12419320-12419077 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.