Cow genome map
| Conread name: | Ss1.1-rpfco0102_k14.5 |
| Conread position: | 2-533 |
| Cow position: | chr23:25626441-25626983 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 95 |
| Conread position: | 5-812 |
| Cow position: | chr23:24639210-24640035 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 545 |
| Conread position: | 8-653 |
| Cow position: | chr23:24547333-24546677 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 63 |
| Conread position: | 10-626 |
| Cow position: | chr23:24522816-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 26 |
| Conread position: | 10-744 |
| Cow position: | chr23:25698813-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 434 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 72 |
| Conread position: | 11-284 |
| Cow position: | chr23:25724043-25723758 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 119, 225 |
| Conread position: | 11-721 |
| Cow position: | chr23:24560806-24560086 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 540 |
| Conread position: | 12-359 |
| Cow position: | chr23:24626393-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 112, 330 |
| Conread position: | 12-426 |
| Cow position: | chr23:25660320-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 57 |
| Conread position: | 12-429 |
| Cow position: | chr23:24639637-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 283 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 114, 286 |
| Conread position: | 12-469 |
| Cow position: | chr23:25626616-25627086 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 12-496 |
| Cow position: | chr23:24547161-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 12-509 |
| Cow position: | chr23:24535960-24535451 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 12-577 |
| Cow position: | chr23:24547245-24546669 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 539 |
| Conread position: | 12-677 |
| Cow position: | chr23:25626367-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 216 |
| Conread position: | 12-750 |
| Cow position: | chr23:24522567-24521816 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 470 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 12-751 |
| Cow position: | chr23:25626115-25626862 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 302 |
| Conread position: | 12-751 |
| Cow position: | chr23:25626283-25627030 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 298 |
| Conread position: | 15-752 |
| Cow position: | chr23:24639388-24640134 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 61 |
| Conread position: | 22-767 |
| Cow position: | chr23:24560879-24560122 (view UCSC Genome Browser custom track) |
| Alignm length: | 761 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 27-582 |
| Cow position: | chr23:25660167-25660733 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 356 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 103, 151 |
| Conread position: | 27-633 |
| Cow position: | chr23:24536029-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 387 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 36-612 |
| Cow position: | chr23:24626177-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 503, 0 |
| Conread position: | 109-761 |
| Cow position: | chr23:25625971-25626620 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 112 |
| Conread position: | 132-666 |
| Cow position: | chr23:25660200-25660733 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 154 |
| Conread position: | 138-701 |
| Cow position: | chr23:24522762-24522203 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 134 |
| Conread position: | 144-789 |
| Cow position: | chr23:25626091-25626736 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 165 |
| Conread position: | 147-761 |
| Cow position: | chr23:24547266-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 0 |
| Conread position: | 153-749 |
| Cow position: | chr23:25660139-25660732 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 11 |
| Conread position: | 164-761 |
| Cow position: | chr23:24547333-24546737 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 140 |
| Conread position: | 165-446 |
| Cow position: | chr23:24654115-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 142, 121 |
| Conread position: | 165-496 |
| Cow position: | chr23:25724045-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 165-716 |
| Cow position: | chr23:24535963-24535412 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 515, 373 |
| Conread position: | 165-809 |
| Cow position: | chr23:24560808-24560158 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 584, 373 |
| Conread position: | 166-752 |
| Cow position: | chr23:24536046-24535461 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 354 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 478, 367 |
| Conread position: | 168-790 |
| Cow position: | chr23:24522814-24522193 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 27 |
| Conread position: | 176-542 |
| Cow position: | chr23:24654042-24654409 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 152, 147 |
| Conread position: | 188-542 |
| Cow position: | chr23:25724106-25723752 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 125, 115 |
| Conread position: | 242-751 |
| Cow position: | chr23:24560899-24560391 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 0 |
| Conread position: | 243-712 |
| Cow position: | chr23:24536053-24535585 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 245-604 |
| Cow position: | chr23:24654025-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 10, 291 |
| Conread position: | 331-794 |
| Cow position: | chr23:24547334-24546867 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 208 |
| Conread position: | 336-761 |
| Cow position: | chr23:24626309-24626731 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 350-757 |
| Cow position: | chr23:25625961-25626367 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 102, 112 |
| Conread position: | 355-750 |
| Cow position: | chr23:25724107-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 114, 105 |
| Conread position: | 356-792 |
| Cow position: | chr23:24639153-24639592 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 59, 53 |
| Conread position: | 357-752 |
| Cow position: | chr23:25698787-25698408 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 117, 51 |
| Conread position: | 397-752 |
| Cow position: | chr23:25698678-25698324 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 412-749 |
| Cow position: | chr23:24654024-24654362 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 413-761 |
| Cow position: | chr23:24536051-24535704 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 413-790 |
| Cow position: | chr23:25660145-25660526 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 230, 124 |
| Conread position: | 415-749 |
| Cow position: | chr23:25724131-25723798 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 308, 122 |
| Conread position: | 499-751 |
| Cow position: | chr23:25724131-25723880 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 145, 46 |
| Conread position: | 528-751 |
| Cow position: | chr23:24654058-24654280 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 101, 15 |
Show alignments to all cow chromosomes.