Cow genome map

Conread name: Ss1.1-rpfco0102_k14.5

Conread position: 1-1224
Cow position: chr25:36801208-36802433 (view UCSC Genome Browser custom track)
Alignm length: 1241
Alignm identity: 1036
Alignm E-value: 0
Alignm gaps (pig, cow): 867, 538

Conread position: 2-453
Cow position: chr25:33305890-33305432 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 296
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 123, 64

Conread position: 2-704
Cow position: chr25:33299141-33299850 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 549

Conread position: 2-791
Cow position: chr25:33298553-33299358 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 544

Conread position: 2-812
Cow position: chr25:33298805-33299633 (view UCSC Genome Browser custom track)
Alignm length: 831
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 544

Conread position: 3-704
Cow position: chr25:36800790-36801490 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 421

Conread position: 3-812
Cow position: chr25:33298890-33299717 (view UCSC Genome Browser custom track)
Alignm length: 830
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 332

Conread position: 4-800
Cow position: chr25:36800539-36801348 (view UCSC Genome Browser custom track)
Alignm length: 815
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 45

Conread position: 8-374
Cow position: chr25:34769624-34769246 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 249
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 118, 247

Conread position: 8-633
Cow position: chr25:33306051-33305422 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 235

Conread position: 8-704
Cow position: chr25:33306139-33305434 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 94

Conread position: 8-761
Cow position: chr25:34770128-34769364 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 46

Conread position: 8-784
Cow position: chr25:33298727-33299518 (view UCSC Genome Browser custom track)
Alignm length: 794
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 307

Conread position: 9-751
Cow position: chr25:326495-327253 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 13

Conread position: 11-533
Cow position: chr25:34447273-34447800 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 337
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 64, 52

Conread position: 11-760
Cow position: chr25:33157474-33156715 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 298

Conread position: 11-761
Cow position: chr25:34762912-34763667 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 447
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 115, 212

Conread position: 12-435
Cow position: chr25:33127802-33128237 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 285
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 114, 301

Conread position: 12-458
Cow position: chr25:34769704-34769246 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 297
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 51, 63

Conread position: 12-496
Cow position: chr25:34763246-34763739 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 303
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 112, 209

Conread position: 12-497
Cow position: chr25:33305235-33304749 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 312
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 113, 315

Conread position: 12-540
Cow position: chr25:34769788-34769247 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 243

Conread position: 12-543
Cow position: chr25:34713950-34714492 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 332
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 75, 66

Conread position: 12-593
Cow position: chr25:326665-327263 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 366
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 114, 164

Conread position: 12-621
Cow position: chr25:34769872-34769252 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 309

Conread position: 12-665
Cow position: chr25:23420230-23420879 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 49

Conread position: 12-726
Cow position: chr25:34447022-34447745 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 64

Conread position: 12-749
Cow position: chr25:34770040-34769292 (view UCSC Genome Browser custom track)
Alignm length: 750
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 539

Conread position: 12-751
Cow position: chr25:34732608-34731858 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 435
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 114, 287

Conread position: 12-792
Cow position: chr25:33298647-33299443 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 538

Conread position: 12-838
Cow position: chr25:33305634-33304818 (view UCSC Genome Browser custom track)
Alignm length: 837
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 124

Conread position: 12-847
Cow position: chr25:33299067-33299917 (view UCSC Genome Browser custom track)
Alignm length: 853
Alignm identity: 610
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 538

Conread position: 15-523
Cow position: chr25:33127721-33128241 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 55

Conread position: 21-627
Cow position: chr25:34713875-34714491 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 371
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 21

Conread position: 24-801
Cow position: chr25:33306286-33305499 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 205

Conread position: 26-569
Cow position: chr25:33144863-33145414 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 341
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 104, 174

Conread position: 39-719
Cow position: chr25:23420173-23420849 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 55

Conread position: 56-761
Cow position: chr25:34770164-34769448 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 39

Conread position: 64-623
Cow position: chr25:34433492-34434053 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 348
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 26, 33

Conread position: 88-785
Cow position: chr25:34446855-34447558 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 72

Conread position: 121-452
Cow position: chr25:18642217-18641883 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 208
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 149, 11

Conread position: 130-784
Cow position: chr25:33298525-33299182 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 171

Conread position: 131-639
Cow position: chr25:33305355-33304854 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 37

Conread position: 132-780
Cow position: chr25:33157425-33156775 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 182

Conread position: 138-426
Cow position: chr25:326977-327265 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 182
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 58, 83

Conread position: 138-784
Cow position: chr25:33157503-33156854 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 615, 410

Conread position: 138-792
Cow position: chr25:326551-327215 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 94

Conread position: 146-591
Cow position: chr25:33127780-33128224 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 92

Conread position: 150-761
Cow position: chr25:326479-327095 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 163

Conread position: 158-807
Cow position: chr25:33298469-33299124 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 605, 386

Conread position: 160-807
Cow position: chr25:36800539-36801192 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 81

Conread position: 164-515
Cow position: chr25:346444-346795 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 218
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 137, 117

Conread position: 164-540
Cow position: chr25:22235824-22236202 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 236
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 20, 48

Conread position: 165-540
Cow position: chr25:22235910-22236286 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 232
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 126, 142

Conread position: 165-771
Cow position: chr25:33144846-33145450 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 192

Conread position: 165-792
Cow position: chr25:36800382-36801007 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 58

Conread position: 167-497
Cow position: chr25:366724-367054 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 205
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 187, 194

Conread position: 167-615
Cow position: chr25:34732105-34731660 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 276
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 166, 180

Conread position: 167-750
Cow position: chr25:34762828-34763407 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 337
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 325, 293

Conread position: 168-808
Cow position: chr25:34770125-34769478 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 372

Conread position: 171-706
Cow position: chr25:34713869-34714403 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 330
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 139, 133

Conread position: 182-675
Cow position: chr25:33127732-33128224 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 44

Conread position: 233-685
Cow position: chr25:36844639-36844197 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 278
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 74, 87

Conread position: 234-537
Cow position: chr25:18642189-18641883 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 195
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 65, 81

Conread position: 241-757
Cow position: chr25:33127707-33128222 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 293

Conread position: 248-621
Cow position: chr25:22235824-22236197 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 234
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 48

Conread position: 249-752
Cow position: chr25:34763243-34763742 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 297
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 287, 211

Conread position: 255-784
Cow position: chr25:34714036-34714565 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 328
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 7, 33

Conread position: 305-751
Cow position: chr25:34433493-34433934 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 276
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 79, 88

Conread position: 315-762
Cow position: chr25:34713845-34714291 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 276
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 180, 171

Conread position: 331-751
Cow position: chr25:23420378-23420797 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 0

Conread position: 331-760
Cow position: chr25:346443-346872 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 273
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 389, 208

Conread position: 331-761
Cow position: chr25:22235823-22236253 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 259
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 21, 208

Conread position: 333-621
Cow position: chr25:34762826-34763114 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 183
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 280, 201

Conread position: 334-639
Cow position: chr25:18642173-18641866 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 198
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 106, 222

Conread position: 335-666
Cow position: chr25:366724-367054 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 205
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 208, 0

Conread position: 335-701
Cow position: chr25:34732609-34732244 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 231
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 138, 130

Conread position: 336-514
Cow position: chr25:34433020-34433198 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 336-722
Cow position: chr25:25652188-25652573 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 229
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 198, 0

Conread position: 336-750
Cow position: chr25:25652440-25652853 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 249
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 198, 0

Conread position: 336-761
Cow position: chr25:25652356-25652780 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 251
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 317, 198

Conread position: 337-760
Cow position: chr25:326330-326752 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 268
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 113, 125

Conread position: 356-761
Cow position: chr25:23420319-23420723 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 360-719
Cow position: chr25:414840-414482 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 238
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 22, 88

Conread position: 381-751
Cow position: chr25:346413-346778 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 236
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 141, 19

Conread position: 399-711
Cow position: chr25:366704-367015 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 200
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 123, 129

Conread position: 408-757
Cow position: chr25:33127706-33128054 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 414-683
Cow position: chr25:36844626-36844358 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 176
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 120, 0

Conread position: 415-762
Cow position: chr25:22235823-22236170 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 214
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 20, 49

Conread position: 420-621
Cow position: chr25:34433020-34433220 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 135
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 112, 0

Conread position: 421-706
Cow position: chr25:33306461-33306182 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 183
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 208, 117

Show alignments to all cow chromosomes.