Cow genome map


           Conread name:
           Ss1.1-rpfco0102_k14.5
        

               Conread position:
               1-1224
               

               Cow position:
               
               

               Alignm length:
               1241
               

               Alignm identity:
               1036
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               867, 538
               

               Conread position:
               2-453
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               296
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               123, 64
               

               Conread position:
               2-704
               

               Cow position:
               
               

               Alignm length:
               715
               

               Alignm identity:
               544
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 549
               

               Conread position:
               2-791
               

               Cow position:
               
               

               Alignm length:
               807
               

               Alignm identity:
               555
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 544
               

               Conread position:
               2-812
               

               Cow position:
               
               

               Alignm length:
               831
               

               Alignm identity:
               578
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 544
               

               Conread position:
               3-704
               

               Cow position:
               
               

               Alignm length:
               715
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 421
               

               Conread position:
               3-812
               

               Cow position:
               
               

               Alignm length:
               830
               

               Alignm identity:
               557
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 332
               

               Conread position:
               4-800
               

               Cow position:
               
               

               Alignm length:
               815
               

               Alignm identity:
               541
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 45
               

               Conread position:
               8-374
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               118, 247
               

               Conread position:
               8-633
               

               Cow position:
               
               

               Alignm length:
               639
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 235
               

               Conread position:
               8-704
               

               Cow position:
               
               

               Alignm length:
               718
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 94
               

               Conread position:
               8-761
               

               Cow position:
               
               

               Alignm length:
               768
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 46
               

               Conread position:
               8-784
               

               Cow position:
               
               

               Alignm length:
               794
               

               Alignm identity:
               545
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 307
               

               Conread position:
               9-751
               

               Cow position:
               
               

               Alignm length:
               765
               

               Alignm identity:
               472
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 13
               

               Conread position:
               11-533
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               337
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               64, 52
               

               Conread position:
               11-760
               

               Cow position:
               
               

               Alignm length:
               766
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 298
               

               Conread position:
               11-761
               

               Cow position:
               
               

               Alignm length:
               765
               

               Alignm identity:
               447
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               115, 212
               

               Conread position:
               12-435
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               285
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               114, 301
               

               Conread position:
               12-458
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               297
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               51, 63
               

               Conread position:
               12-496
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               303
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               112, 209
               

               Conread position:
               12-497
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               312
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               113, 315
               

               Conread position:
               12-540
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 243
               

               Conread position:
               12-543
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               332
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               75, 66
               

               Conread position:
               12-593
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               366
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               114, 164
               

               Conread position:
               12-621
               

               Cow position:
               
               

               Alignm length:
               623
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 309
               

               Conread position:
               12-665
               

               Cow position:
               
               

               Alignm length:
               659
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 49
               

               Conread position:
               12-726
               

               Cow position:
               
               

               Alignm length:
               731
               

               Alignm identity:
               460
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 64
               

               Conread position:
               12-749
               

               Cow position:
               
               

               Alignm length:
               750
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 539
               

               Conread position:
               12-751
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               435
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               114, 287
               

               Conread position:
               12-792
               

               Cow position:
               
               

               Alignm length:
               799
               

               Alignm identity:
               544
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 538
               

               Conread position:
               12-838
               

               Cow position:
               
               

               Alignm length:
               837
               

               Alignm identity:
               523
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 124
               

               Conread position:
               12-847
               

               Cow position:
               
               

               Alignm length:
               853
               

               Alignm identity:
               610
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 538
               

               Conread position:
               15-523
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 55
               

               Conread position:
               21-627
               

               Cow position:
               
               

               Alignm length:
               623
               

               Alignm identity:
               371
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               26, 21
               

               Conread position:
               24-801
               

               Cow position:
               
               

               Alignm length:
               799
               

               Alignm identity:
               512
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 205
               

               Conread position:
               26-569
               

               Cow position:
               
               

               Alignm length:
               557
               

               Alignm identity:
               341
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               104, 174
               

               Conread position:
               39-719
               

               Cow position:
               
               

               Alignm length:
               684
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 55
               

               Conread position:
               56-761
               

               Cow position:
               
               

               Alignm length:
               720
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 39
               

               Conread position:
               64-623
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               348
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               26, 33
               

               Conread position:
               88-785
               

               Cow position:
               
               

               Alignm length:
               707
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 72
               

               Conread position:
               121-452
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               149, 11
               

               Conread position:
               130-784
               

               Cow position:
               
               

               Alignm length:
               661
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 171
               

               Conread position:
               131-639
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 37
               

               Conread position:
               132-780
               

               Cow position:
               
               

               Alignm length:
               657
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 182
               

               Conread position:
               138-426
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               58, 83
               

               Conread position:
               138-784
               

               Cow position:
               
               

               Alignm length:
               651
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               615, 410
               

               Conread position:
               138-792
               

               Cow position:
               
               

               Alignm length:
               672
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 94
               

               Conread position:
               146-591
               

               Cow position:
               
               

               Alignm length:
               447
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 92
               

               Conread position:
               150-761
               

               Cow position:
               
               

               Alignm length:
               622
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 163
               

               Conread position:
               158-807
               

               Cow position:
               
               

               Alignm length:
               657
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               605, 386
               

               Conread position:
               160-807
               

               Cow position:
               
               

               Alignm length:
               657
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 81
               

               Conread position:
               164-515
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               137, 117
               

               Conread position:
               164-540
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               20, 48
               

               Conread position:
               165-540
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               126, 142
               

               Conread position:
               165-771
               

               Cow position:
               
               

               Alignm length:
               612
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               372, 192
               

               Conread position:
               165-792
               

               Cow position:
               
               

               Alignm length:
               634
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 58
               

               Conread position:
               167-497
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               205
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               187, 194
               

               Conread position:
               167-615
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               276
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               166, 180
               

               Conread position:
               167-750
               

               Cow position:
               
               

               Alignm length:
               586
               

               Alignm identity:
               337
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               325, 293
               

               Conread position:
               168-808
               

               Cow position:
               
               

               Alignm length:
               649
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 372
               

               Conread position:
               171-706
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               330
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               139, 133
               

               Conread position:
               182-675
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 44
               

               Conread position:
               233-685
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               278
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               74, 87
               

               Conread position:
               234-537
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               65, 81
               

               Conread position:
               241-757
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               394, 293
               

               Conread position:
               248-621
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               16, 48
               

               Conread position:
               249-752
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               297
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               287, 211
               

               Conread position:
               255-784
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               328
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               7, 33
               

               Conread position:
               305-751
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               276
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               79, 88
               

               Conread position:
               315-762
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               276
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               180, 171
               

               Conread position:
               331-751
               

               Cow position:
               
               

               Alignm length:
               421
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 0
               

               Conread position:
               331-760
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               273
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               389, 208
               

               Conread position:
               331-761
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               259
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               21, 208
               

               Conread position:
               333-621
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               280, 201
               

               Conread position:
               334-639
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               106, 222
               

               Conread position:
               335-666
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               205
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               335-701
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               231
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               138, 130
               

               Conread position:
               336-514
               

               Cow position:
               
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               336-722
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               198, 0
               

               Conread position:
               336-750
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               249
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               198, 0
               

               Conread position:
               336-761
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               317, 198
               

               Conread position:
               337-760
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               113, 125
               

               Conread position:
               356-761
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 0
               

               Conread position:
               360-719
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               238
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               22, 88
               

               Conread position:
               381-751
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               141, 19
               

               Conread position:
               399-711
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               123, 129
               

               Conread position:
               408-757
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               414-683
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               415-762
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               214
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               20, 49
               

               Conread position:
               420-621
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               421-706
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               208, 117
               
Show alignments to all cow chromosomes.