Cow genome map
| Conread name: | Ss1.1-rpfco0102_k14.5 |
| Conread position: | 2-520 |
| Cow position: | chr28:7810422-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 304 |
| Conread position: | 2-750 |
| Cow position: | chr28:9298724-9299466 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 78 |
| Conread position: | 2-784 |
| Cow position: | chr28:9252759-9253554 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 87 |
| Conread position: | 2-830 |
| Cow position: | chr28:7757910-7758740 (view UCSC Genome Browser custom track) |
| Alignm length: | 848 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 404 |
| Conread position: | 3-425 |
| Cow position: | chr28:9253178-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 318 |
| Conread position: | 3-539 |
| Cow position: | chr28:7758247-7758780 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 141 |
| Conread position: | 3-762 |
| Cow position: | chr28:9298976-9299725 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 18 |
| Conread position: | 6-428 |
| Cow position: | chr28:33210222-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 120, 411 |
| Conread position: | 7-698 |
| Cow position: | chr28:9289996-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 37 |
| Conread position: | 8-605 |
| Cow position: | chr28:34695992-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 376 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 63 |
| Conread position: | 8-608 |
| Cow position: | chr28:7810344-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 275 |
| Conread position: | 8-663 |
| Cow position: | chr28:9299063-9299712 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 63 |
| Conread position: | 8-751 |
| Cow position: | chr28:7757580-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 542 |
| Conread position: | 10-464 |
| Cow position: | chr28:9290250-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 114, 228 |
| Conread position: | 10-749 |
| Cow position: | chr28:7757252-7757996 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 90 |
| Conread position: | 11-761 |
| Cow position: | chr28:11334138-11333383 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 451 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 114, 303 |
| Conread position: | 12-544 |
| Cow position: | chr28:9290172-9290709 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 344 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 114, 36 |
| Conread position: | 12-700 |
| Cow position: | chr28:11334053-11333360 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 423 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 118, 546 |
| Conread position: | 12-751 |
| Cow position: | chr28:7758088-7758821 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 220 |
| Conread position: | 12-783 |
| Cow position: | chr28:9298567-9299335 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 98 |
| Conread position: | 12-807 |
| Cow position: | chr28:7757500-7758313 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 548 |
| Conread position: | 12-818 |
| Cow position: | chr28:7757416-7758235 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 393 |
| Conread position: | 13-545 |
| Cow position: | chr28:34673356-34673901 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 338 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 48, 63 |
| Conread position: | 25-757 |
| Cow position: | chr28:34695841-34696584 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 448 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 105, 223 |
| Conread position: | 31-692 |
| Cow position: | chr28:7810283-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 256 |
| Conread position: | 74-751 |
| Cow position: | chr28:7810251-7810921 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 286 |
| Conread position: | 126-761 |
| Cow position: | chr28:9252977-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 0 |
| Conread position: | 133-732 |
| Cow position: | chr28:9290053-9290645 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 171 |
| Conread position: | 147-761 |
| Cow position: | chr28:34695891-34696504 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 375 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 61, 80 |
| Conread position: | 148-807 |
| Cow position: | chr28:9252584-9253244 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 147 |
| Conread position: | 165-757 |
| Cow position: | chr28:9298564-9299153 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 101 |
| Conread position: | 167-794 |
| Cow position: | chr28:7757169-7757792 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 88 |
| Conread position: | 168-751 |
| Cow position: | chr28:11334053-11333471 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 139 |
| Conread position: | 169-634 |
| Cow position: | chr28:34673440-34673904 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 59 |
| Conread position: | 199-807 |
| Cow position: | chr28:7757117-7757725 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 564, 211 |
| Conread position: | 209-794 |
| Cow position: | chr28:9298521-9299109 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 146 |
| Conread position: | 250-719 |
| Cow position: | chr28:34673353-34673821 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 297 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 252-646 |
| Cow position: | chr28:33210228-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 54, 63 |
| Conread position: | 315-761 |
| Cow position: | chr28:11334242-11333797 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 154, 144 |
| Conread position: | 333-723 |
| Cow position: | chr28:33210225-33210615 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 72, 77 |
| Conread position: | 335-705 |
| Cow position: | chr28:34679559-34679189 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 140, 14 |
| Conread position: | 335-789 |
| Cow position: | chr28:9298400-9298853 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 103 |
| Conread position: | 337-751 |
| Cow position: | chr28:34673356-34673769 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 119, 136 |
| Conread position: | 340-761 |
| Cow position: | chr28:9252524-9252938 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 132, 108 |
| Conread position: | 355-807 |
| Cow position: | chr28:7810283-7810732 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 174 |
| Conread position: | 420-751 |
| Cow position: | chr28:33210228-33210558 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 199, 123 |
Show alignments to all cow chromosomes.