Cow genome map
| Conread name: | Ss1.1-rpfco0102_k14.5 |
| Conread position: | 1-627 |
| Cow position: | chr7:8243459-8244093 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 390 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 1-767 |
| Cow position: | chr7:11601198-11600422 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 75 |
| Conread position: | 1-784 |
| Cow position: | chr7:8243292-8244086 (view UCSC Genome Browser custom track) |
| Alignm length: | 810 |
| Alignm identity: | 484 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 101, 78 |
| Conread position: | 2-395 |
| Cow position: | chr7:1439881-1440285 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 116, 90 |
| Conread position: | 2-751 |
| Cow position: | chr7:42879118-42878358 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 549 |
| Conread position: | 2-812 |
| Cow position: | chr7:42879202-42878374 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 476 |
| Conread position: | 8-789 |
| Cow position: | chr7:18389990-18390786 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 43 |
| Conread position: | 9-705 |
| Cow position: | chr7:8243384-8244087 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 439 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 8 |
| Conread position: | 9-749 |
| Cow position: | chr7:11434973-11434243 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 462 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 9-784 |
| Cow position: | chr7:1439467-1440257 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 292 |
| Conread position: | 11-756 |
| Cow position: | chr7:1014524-1015276 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 301 |
| Conread position: | 12-465 |
| Cow position: | chr7:18390330-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 119, 244 |
| Conread position: | 12-519 |
| Cow position: | chr7:3180369-3180886 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 12-537 |
| Cow position: | chr7:8325573-8326110 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 340 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 43, 61 |
| Conread position: | 12-640 |
| Cow position: | chr7:1014855-1015496 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 61 |
| Conread position: | 12-677 |
| Cow position: | chr7:3180201-3180876 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 216 |
| Conread position: | 12-705 |
| Cow position: | chr7:8324817-8325521 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 435 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 12-723 |
| Cow position: | chr7:1014771-1015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 137 |
| Conread position: | 12-726 |
| Cow position: | chr7:1439554-1440279 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 33 |
| Conread position: | 12-749 |
| Cow position: | chr7:3180033-3180781 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 316 |
| Conread position: | 12-761 |
| Cow position: | chr7:1014273-1015027 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 456 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 113, 298 |
| Conread position: | 12-761 |
| Cow position: | chr7:3179781-3180541 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 375 |
| Conread position: | 12-761 |
| Cow position: | chr7:8325321-8326081 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 297 |
| Conread position: | 12-761 |
| Cow position: | chr7:42879024-42878264 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 310 |
| Conread position: | 12-784 |
| Cow position: | chr7:8277260-8278047 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 479 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 12-784 |
| Cow position: | chr7:8324985-8325772 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 476 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 75, 67 |
| Conread position: | 12-785 |
| Cow position: | chr7:8325153-8325941 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 489 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 12-789 |
| Cow position: | chr7:1014441-1015227 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 181 |
| Conread position: | 12-789 |
| Cow position: | chr7:3179949-3180741 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 217 |
| Conread position: | 13-705 |
| Cow position: | chr7:8277597-8278300 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 13-751 |
| Cow position: | chr7:1014688-1015437 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 14-751 |
| Cow position: | chr7:8324735-8325483 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 18-706 |
| Cow position: | chr7:8277854-8278551 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 429 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 108, 280 |
| Conread position: | 33-719 |
| Cow position: | chr7:18390099-18390796 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 526 |
| Conread position: | 74-789 |
| Cow position: | chr7:1439448-1440178 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 140 |
| Conread position: | 126-809 |
| Cow position: | chr7:42879234-42878545 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 509, 413 |
| Conread position: | 138-730 |
| Cow position: | chr7:1438137-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 59 |
| Conread position: | 138-789 |
| Cow position: | chr7:3179751-3180405 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 148 |
| Conread position: | 138-789 |
| Cow position: | chr7:11601133-11600479 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 88 |
| Conread position: | 164-751 |
| Cow position: | chr7:1014269-1014849 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 152 |
| Conread position: | 164-790 |
| Cow position: | chr7:8242879-8243508 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 390 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 148, 133 |
| Conread position: | 165-711 |
| Cow position: | chr7:8277257-8277802 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 329 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 71, 50 |
| Conread position: | 165-752 |
| Cow position: | chr7:8243048-8243633 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 365 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 167-761 |
| Cow position: | chr7:8324816-8325409 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 374 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 50, 40 |
| Conread position: | 168-812 |
| Cow position: | chr7:42879276-42878626 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 554, 366 |
| Conread position: | 170-771 |
| Cow position: | chr7:1438085-1438687 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 567, 130 |
| Conread position: | 183-751 |
| Cow position: | chr7:3179712-3180279 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 127 |
| Conread position: | 249-705 |
| Cow position: | chr7:8324730-8325185 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 295 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 259-761 |
| Cow position: | chr7:8242806-8243307 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 265-761 |
| Cow position: | chr7:3179710-3180205 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 442, 279 |
| Conread position: | 328-812 |
| Cow position: | chr7:42879452-42878962 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 312 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 384-762 |
| Cow position: | chr7:11601223-11600846 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 77, 85 |
| Conread position: | 440-751 |
| Cow position: | chr7:11601250-11600941 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 198, 23 |
| Conread position: | 584-761 |
| Cow position: | chr7:1014268-1014445 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.