Cow genome map


           Conread name:
           Ss1.1-rpfco0102_k14.5
        

               Conread position:
               1-627
               

               Cow position:
               
               

               Alignm length:
               646
               

               Alignm identity:
               390
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               54, 72
               

               Conread position:
               1-767
               

               Cow position:
               
               

               Alignm length:
               785
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 75
               

               Conread position:
               1-784
               

               Cow position:
               
               

               Alignm length:
               810
               

               Alignm identity:
               484
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               101, 78
               

               Conread position:
               2-395
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               116, 90
               

               Conread position:
               2-751
               

               Cow position:
               
               

               Alignm length:
               762
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 549
               

               Conread position:
               2-812
               

               Cow position:
               
               

               Alignm length:
               833
               

               Alignm identity:
               567
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 476
               

               Conread position:
               8-789
               

               Cow position:
               
               

               Alignm length:
               800
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 43
               

               Conread position:
               9-705
               

               Cow position:
               
               

               Alignm length:
               719
               

               Alignm identity:
               439
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               44, 8
               

               Conread position:
               9-749
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               462
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               46, 59
               

               Conread position:
               9-784
               

               Cow position:
               
               

               Alignm length:
               796
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 292
               

               Conread position:
               11-756
               

               Cow position:
               
               

               Alignm length:
               757
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 301
               

               Conread position:
               12-465
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               295
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               119, 244
               

               Conread position:
               12-519
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 74
               

               Conread position:
               12-537
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               340
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               43, 61
               

               Conread position:
               12-640
               

               Cow position:
               
               

               Alignm length:
               646
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 61
               

               Conread position:
               12-677
               

               Cow position:
               
               

               Alignm length:
               682
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 216
               

               Conread position:
               12-705
               

               Cow position:
               
               

               Alignm length:
               716
               

               Alignm identity:
               435
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               56, 43
               

               Conread position:
               12-723
               

               Cow position:
               
               

               Alignm length:
               732
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 137
               

               Conread position:
               12-726
               

               Cow position:
               
               

               Alignm length:
               732
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 33
               

               Conread position:
               12-749
               

               Cow position:
               
               

               Alignm length:
               752
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 316
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               764
               

               Alignm identity:
               456
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               113, 298
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               764
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 375
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               770
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 297
               

               Conread position:
               12-761
               

               Cow position:
               
               

               Alignm length:
               763
               

               Alignm identity:
               513
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 310
               

               Conread position:
               12-784
               

               Cow position:
               
               

               Alignm length:
               796
               

               Alignm identity:
               479
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               61, 42
               

               Conread position:
               12-784
               

               Cow position:
               
               

               Alignm length:
               797
               

               Alignm identity:
               476
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               75, 67
               

               Conread position:
               12-785
               

               Cow position:
               
               

               Alignm length:
               801
               

               Alignm identity:
               489
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               52, 33
               

               Conread position:
               12-789
               

               Cow position:
               
               

               Alignm length:
               797
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 181
               

               Conread position:
               12-789
               

               Cow position:
               
               

               Alignm length:
               797
               

               Alignm identity:
               523
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 217
               

               Conread position:
               13-705
               

               Cow position:
               
               

               Alignm length:
               714
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 47
               

               Conread position:
               13-751
               

               Cow position:
               
               

               Alignm length:
               755
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 63
               

               Conread position:
               14-751
               

               Cow position:
               
               

               Alignm length:
               766
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 41
               

               Conread position:
               18-706
               

               Cow position:
               
               

               Alignm length:
               705
               

               Alignm identity:
               429
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               108, 280
               

               Conread position:
               33-719
               

               Cow position:
               
               

               Alignm length:
               699
               

               Alignm identity:
               431
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 526
               

               Conread position:
               74-789
               

               Cow position:
               
               

               Alignm length:
               737
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 140
               

               Conread position:
               126-809
               

               Cow position:
               
               

               Alignm length:
               692
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               509, 413
               

               Conread position:
               138-730
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               304, 59
               

               Conread position:
               138-789
               

               Cow position:
               
               

               Alignm length:
               661
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 148
               

               Conread position:
               138-789
               

               Cow position:
               
               

               Alignm length:
               660
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 88
               

               Conread position:
               164-751
               

               Cow position:
               
               

               Alignm length:
               591
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 152
               

               Conread position:
               164-790
               

               Cow position:
               
               

               Alignm length:
               641
               

               Alignm identity:
               390
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               148, 133
               

               Conread position:
               165-711
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               329
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               71, 50
               

               Conread position:
               165-752
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               365
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               55, 61
               

               Conread position:
               167-761
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               374
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               50, 40
               

               Conread position:
               168-812
               

               Cow position:
               
               

               Alignm length:
               653
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               554, 366
               

               Conread position:
               170-771
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               567, 130
               

               Conread position:
               183-751
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 127
               

               Conread position:
               249-705
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               295
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               67, 56
               

               Conread position:
               259-761
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 41
               

               Conread position:
               265-761
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               442, 279
               

               Conread position:
               328-812
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               312
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               19, 9
               

               Conread position:
               384-762
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               242
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               77, 85
               

               Conread position:
               440-751
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               198, 23
               

               Conread position:
               584-761
               

               Cow position:
               
               

               Alignm length:
               178
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.