Cow genome map
| Conread name: | Ss1.1-rpfco0102_k14.5 |
| Conread position: | 2-354 |
| Cow position: | chrX:29045018-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 122, 313 |
| Conread position: | 2-361 |
| Cow position: | chrX:25310216-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 122, 364 |
| Conread position: | 2-593 |
| Cow position: | chrX:25324841-25324239 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 2-756 |
| Cow position: | chrX:25325513-25324746 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 227 |
| Conread position: | 2-809 |
| Cow position: | chrX:25325093-25324268 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 320 |
| Conread position: | 2-812 |
| Cow position: | chrX:29045585-29044778 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 143 |
| Conread position: | 8-526 |
| Cow position: | chrX:25310054-25310584 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 222 |
| Conread position: | 8-627 |
| Cow position: | chrX:12627435-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 388 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 8-711 |
| Cow position: | chrX:25309802-25310516 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 542 |
| Conread position: | 12-514 |
| Cow position: | chrX:29045176-29044662 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 303 |
| Conread position: | 12-677 |
| Cow position: | chrX:25324915-25324239 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 12-698 |
| Cow position: | chrX:25309890-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 315 |
| Conread position: | 12-752 |
| Cow position: | chrX:25324999-25324248 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 548 |
| Conread position: | 12-784 |
| Cow position: | chrX:29045827-29045061 (view UCSC Genome Browser custom track) |
| Alignm length: | 792 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 66 |
| Conread position: | 12-808 |
| Cow position: | chrX:25325335-25324521 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 228 |
| Conread position: | 20-790 |
| Cow position: | chrX:25309730-25310516 (view UCSC Genome Browser custom track) |
| Alignm length: | 789 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 530 |
| Conread position: | 23-691 |
| Cow position: | chrX:29045333-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 528 |
| Conread position: | 25-542 |
| Cow position: | chrX:29045970-29045453 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 327 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 46 |
| Conread position: | 131-761 |
| Cow position: | chrX:25325540-25324911 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 587, 407 |
| Conread position: | 131-807 |
| Cow position: | chrX:25325708-25325026 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 121 |
| Conread position: | 132-794 |
| Cow position: | chrX:25309770-25310436 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 617, 412 |
| Conread position: | 137-787 |
| Cow position: | chrX:25325786-25325133 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 138 |
| Conread position: | 138-729 |
| Cow position: | chrX:13826810-13826220 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 350 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 140-774 |
| Cow position: | chrX:29045288-29044651 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 171 |
| Conread position: | 164-789 |
| Cow position: | chrX:25309718-25310346 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 165-705 |
| Cow position: | chrX:12627352-12627889 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 332 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 45, 58 |
| Conread position: | 166-752 |
| Cow position: | chrX:14181560-14180975 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 342 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 137, 122 |
| Conread position: | 190-626 |
| Cow position: | chrX:13826926-13826491 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 245-789 |
| Cow position: | chrX:25309715-25310262 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 52 |
| Conread position: | 249-700 |
| Cow position: | chrX:29045830-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 291 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 311-716 |
| Cow position: | chrX:12627330-12627732 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 252, 151 |
| Conread position: | 314-761 |
| Cow position: | chrX:25309700-25310146 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 233 |
| Conread position: | 336-761 |
| Cow position: | chrX:13826948-13826524 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 116, 127 |
| Conread position: | 343-812 |
| Cow position: | chrX:25325832-25325357 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 358-784 |
| Cow position: | chrX:25309660-25310089 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 417-814 |
| Cow position: | chrX:29045830-29045429 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 264 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 49, 43 |
Show alignments to all cow chromosomes.