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Cow genome map

           
Conread name:
           
Ss1.1-rpfco0128_b15.5
        

               
Conread position:
               
1-104
               

               
Cow position:
               
chr5:60015713-60015822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr5:14630115-14629973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
39, 67
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr5:59759181-59759398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 136
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr5:37377669-37377897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr5:62995641-62995886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
72, 32
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr5:40039975-40039728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr5:41523000-41522758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
98, 143
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr5:27015484-27015722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr5:26790656-26790406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
98, 69
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr5:2500391-2500116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 12
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr5:15426321-15426624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
81, 247
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr5:20407871-20407592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
105, 162
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr5:34441998-34441694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 84
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr5:50215763-50215475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr5:61488319-61488025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
13, 206
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr5:65887221-65886924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 217
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr5:360152-359792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 213
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr5:64758969-64758615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr5:11427446-11427024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
81, 218
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:4322207-4322628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
118, 15
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:14904277-14903851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:25495544-25495136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:28330538-28330126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:30302691-30303096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 81
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:30487040-30487442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
105, 37
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:40152269-40152702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
15, 89
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:47317174-47316760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
95, 84
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:59082399-59081977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
118, 7
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:61725763-61726172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 148
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr5:69337621-69338029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 152
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr5:50943358-50942942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 171
               

               
Conread position:
               
2-357
               

               
Cow position:
               
chr5:54311130-54311489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
100, 25
               

               
Conread position:
               
2-415
               

               
Cow position:
               
chr5:50599856-50600259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 9
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr5:21964083-21964352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
3-395
               

               
Cow position:
               
chr5:6286629-6286256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 177
               

               
Conread position:
               
3-420
               

               
Cow position:
               
chr5:17063297-17062861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
8, 56
               

               
Conread position:
               
4-288
               

               
Cow position:
               
chr5:50637630-50637907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
98, 9
               

               
Conread position:
               
7-251
               

               
Cow position:
               
chr5:20344958-20345211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
75, 164
               

               
Conread position:
               
7-288
               

               
Cow position:
               
chr5:19813412-19813134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
92, 43
               

               
Conread position:
               
7-362
               

               
Cow position:
               
chr5:43992127-43992484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
82, 25
               

               
Conread position:
               
7-405
               

               
Cow position:
               
chr5:52040518-52040118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
69, 195
               

               
Conread position:
               
8-248
               

               
Cow position:
               
chr5:35235906-35235663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
91, 126
               

               
Conread position:
               
8-288
               

               
Cow position:
               
chr5:3281069-3280786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 155
               

               
Conread position:
               
8-288
               

               
Cow position:
               
chr5:57575568-57575859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
8-288
               

               
Cow position:
               
chr5:75437094-75436800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
8-415
               

               
Cow position:
               
chr5:8024390-8024002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
91, 73
               

               
Conread position:
               
8-417
               

               
Cow position:
               
chr5:26467422-26467842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 306
               

               
Conread position:
               
8-420
               

               
Cow position:
               
chr5:34977035-34976621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
104, 15
               

               
Conread position:
               
9-280
               

               
Cow position:
               
chr5:13691771-13691489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
9-416
               

               
Cow position:
               
chr5:47704330-47703908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
71, 186
               

               
Conread position:
               
10-118
               

               
Cow position:
               
chr5:19969227-19969113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
10-126
               

               
Cow position:
               
chr5:60948023-60948143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
72, 50
               

               
Conread position:
               
10-138
               

               
Cow position:
               
chr5:61455559-61455694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
10-148
               

               
Cow position:
               
chr5:24837141-24837001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
10-150
               

               
Cow position:
               
chr5:32087916-32087767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
10-159
               

               
Cow position:
               
chr5:24642917-24642770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
10-159
               

               
Cow position:
               
chr5:66297043-66297194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 93
               

               
Conread position:
               
10-160
               

               
Cow position:
               
chr5:46323007-46322853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
10-160
               

               
Cow position:
               
chr5:63917606-63917453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
10-162
               

               
Cow position:
               
chr5:15462519-15462674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
93, 13
               

               
Conread position:
               
10-165
               

               
Cow position:
               
chr5:54530787-54530947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
62, 120
               

               
Conread position:
               
10-170
               

               
Cow position:
               
chr5:28229962-28230122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
144, 106
               

               
Conread position:
               
10-170
               

               
Cow position:
               
chr5:69099333-69099500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
10-173
               

               
Cow position:
               
chr5:37366702-37366872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
10-175
               

               
Cow position:
               
chr5:12672222-12672057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
148, 52
               

               
Conread position:
               
10-180
               

               
Cow position:
               
chr5:58005048-58005229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
72, 132
               

               
Conread position:
               
10-186
               

               
Cow position:
               
chr5:5848382-5848205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
10-190
               

               
Cow position:
               
chr5:42667584-42667401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
88, 38
               

               
Conread position:
               
10-190
               

               
Cow position:
               
chr5:57271460-57271277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
10-194
               

               
Cow position:
               
chr5:60519971-60520155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
152, 52
               

               
Conread position:
               
10-195
               

               
Cow position:
               
chr5:21524969-21525164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
10-195
               

               
Cow position:
               
chr5:33661659-33661850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 130
               

               
Conread position:
               
10-196
               

               
Cow position:
               
chr5:45036826-45037016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
86, 117
               

               
Conread position:
               
10-198
               

               
Cow position:
               
chr5:32963825-32963635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
78, 109
               

               
Conread position:
               
10-198
               

               
Cow position:
               
chr5:65933123-65932930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
10-201
               

               
Cow position:
               
chr5:10789873-10789676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 127
               

               
Conread position:
               
10-201
               

               
Cow position:
               
chr5:50729300-50729494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
67, 160
               

               
Conread position:
               
10-202
               

               
Cow position:
               
chr5:68604663-68604858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 180
               

               
Conread position:
               
10-206
               

               
Cow position:
               
chr5:47313278-47313480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 44
               

               
Conread position:
               
10-212
               

               
Cow position:
               
chr5:35145157-35145363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
96, 74
               

               
Conread position:
               
10-217
               

               
Cow position:
               
chr5:6575783-6575574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
97, 67
               

               
Conread position:
               
10-218
               

               
Cow position:
               
chr5:49558972-49559183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
89, 171
               

               
Conread position:
               
10-222
               

               
Cow position:
               
chr5:56135164-56134944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
93, 125
               

               
Conread position:
               
10-223
               

               
Cow position:
               
chr5:14420540-14420319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 135
               

               
Conread position:
               
10-224
               

               
Cow position:
               
chr5:27403439-27403215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 183
               

               
Conread position:
               
10-224
               

               
Cow position:
               
chr5:56433603-56433831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
10-227
               

               
Cow position:
               
chr5:6130157-6130379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 198
               

               
Conread position:
               
10-227
               

               
Cow position:
               
chr5:9859914-9859686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
63, 138
               

               
Conread position:
               
10-227
               

               
Cow position:
               
chr5:50950358-50950579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 49
               

               
Conread position:
               
10-227
               

               
Cow position:
               
chr5:72150056-72150275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
10-228
               

               
Cow position:
               
chr5:75230488-75230701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
10-234
               

               
Cow position:
               
chr5:34288665-34288436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
10-235
               

               
Cow position:
               
chr5:16184894-16185121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
89, 55
               

               
Conread position:
               
10-236
               

               
Cow position:
               
chr5:694391-694609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 42
               

               
Conread position:
               
10-236
               

               
Cow position:
               
chr5:4617178-4617402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 82
               

               
Conread position:
               
10-236
               

               
Cow position:
               
chr5:43474652-43474879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
88, 187
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chr5:44583314-44583097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
152, 48
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chr5:59443447-59443215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
62, 155
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chr5:62826949-62826717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
10-240
               

               
Cow position:
               
chr5:28927788-28927548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
10-240
               

               
Cow position:
               
chr5:72310519-72310741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
93, 60
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr5:8994761-8994526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
89, 111
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr5:54064584-54064815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr5:58144799-58144562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
93, 188
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr5:1766539-1766309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 124
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr5:4218682-4218907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
89, 70
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr5:16508900-16509140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
73, 27
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr5:21944186-21944438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr5:56518405-56518168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
93, 185
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr5:54405091-54404848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
73, 84
               

               
Conread position:
               
10-244
               

               
Cow position:
               
chr5:6086757-6086518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
72, 201
               

               
Conread position:
               
10-244
               

               
Cow position:
               
chr5:59298154-59297920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
67, 131
               

               
Conread position:
               
10-245
               

               
Cow position:
               
chr5:12709690-12709932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
10-251
               

               
Cow position:
               
chr5:1779457-1779236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
92, 39
               

               
Conread position:
               
10-251
               

               
Cow position:
               
chr5:30639048-30638814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
102, 48
               

               
Conread position:
               
10-251
               

               
Cow position:
               
chr5:49820947-49821189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
10-251
               

               
Cow position:
               
chr5:51490949-51490715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
89, 18
               

               
Conread position:
               
10-260
               

               
Cow position:
               
chr5:54713932-54713673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
102, 203
               

               
Conread position:
               
10-265
               

               
Cow position:
               
chr5:65593684-65593935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
89, 62
               

               
Conread position:
               
10-270
               

               
Cow position:
               
chr5:64823508-64823243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 141
               

               
Conread position:
               
10-278
               

               
Cow position:
               
chr5:35449058-35449312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
93, 131
               

               
Conread position:
               
10-280
               

               
Cow position:
               
chr5:20783429-20783696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
96, 153
               

               
Conread position:
               
10-280
               

               
Cow position:
               
chr5:32140902-32140630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
96, 32
               

               
Conread position:
               
10-280
               

               
Cow position:
               
chr5:63964368-63964091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
72, 163
               

               
Conread position:
               
10-283
               

               
Cow position:
               
chr5:42744598-42744867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
10-285
               

               
Cow position:
               
chr5:47547912-47547639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
94, 10
               

               
Conread position:
               
10-285
               

               
Cow position:
               
chr5:72564566-72564847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
98, 75
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr5:9390340-9390638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr5:29771319-29771613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
57, 119
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr5:31144971-31144702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
89, 12
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr5:31480959-31481233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
105, 58
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr5:39094358-39094635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr5:46122546-46122268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 38
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr5:56820455-56820179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
89, 23
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr5:67243730-67244002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
70, 134
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr5:68265159-68264873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
70, 135
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:3204640-3204916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:15478918-15479212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 145
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:32697008-32696736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 43
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:33537695-33537954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
89, 110
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:34528366-34528633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
84, 131
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:41951280-41951010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 111
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:43738147-43737877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
96, 74
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:45803865-45804146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
72, 46
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:49685476-49685185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
46, 210
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:57736919-57737185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
89, 51
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:58793810-58793521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 89
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:62142475-62142762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 133
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:65601265-65601543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
89, 155
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr5:74015744-74016026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
47, 245
               

               
Conread position:
               
10-333
               

               
Cow position:
               
chr5:63992358-63992041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
93, 125
               

               
Conread position:
               
10-340
               

               
Cow position:
               
chr5:6045092-6045434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 300
               

               
Conread position:
               
10-351
               

               
Cow position:
               
chr5:69731322-69731647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
182, 52
               

               
Conread position:
               
10-356
               

               
Cow position:
               
chr5:25231208-25230865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
34, 164
               

               
Conread position:
               
10-356
               

               
Cow position:
               
chr5:31640232-31640575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
152, 75
               

               
Conread position:
               
10-357
               

               
Cow position:
               
chr5:458286-458641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 202
               

               
Conread position:
               
10-357
               

               
Cow position:
               
chr5:41546089-41545740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
10-359
               

               
Cow position:
               
chr5:50533578-50533231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
152, 57
               

               
Conread position:
               
10-360
               

               
Cow position:
               
chr5:43929929-43929578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 70
               

               
Conread position:
               
10-361
               

               
Cow position:
               
chr5:5111272-5110912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 336
               

               
Conread position:
               
10-361
               

               
Cow position:
               
chr5:50821593-50821946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 44
               

               
Conread position:
               
10-362
               

               
Cow position:
               
chr5:46510062-46509704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 121
               

               
Conread position:
               
10-362
               

               
Cow position:
               
chr5:57626611-57626949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
89, 137
               

               
Conread position:
               
10-365
               

               
Cow position:
               
chr5:54350556-54350200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
108, 61
               

               
Conread position:
               
10-369
               

               
Cow position:
               
chr5:67212183-67212524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
120, 75
               

               
Conread position:
               
10-373
               

               
Cow position:
               
chr5:37646746-37646377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 102
               

               
Conread position:
               
10-375
               

               
Cow position:
               
chr5:26094365-26093991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
73, 160
               

               
Conread position:
               
10-388
               

               
Cow position:
               
chr5:7193236-7193599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
89, 111
               

               
Conread position:
               
10-389
               

               
Cow position:
               
chr5:28247981-28248362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
70, 125
               

               
Conread position:
               
10-390
               

               
Cow position:
               
chr5:68871997-68872383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
113, 17
               

               
Conread position:
               
10-391
               

               
Cow position:
               
chr5:71494621-71495011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
33, 322
               

               
Conread position:
               
10-392
               

               
Cow position:
               
chr5:64139367-64139747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 172
               

               
Conread position:
               
10-392
               

               
Cow position:
               
chr5:66366335-66366699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
10-399
               

               
Cow position:
               
chr5:37814428-37814824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
52, 82
               

               
Conread position:
               
10-405
               

               
Cow position:
               
chr5:4507156-4506760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
70, 187
               

               
Conread position:
               
10-409
               

               
Cow position:
               
chr5:15722250-15721881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
152, 43
               

               
Conread position:
               
10-409
               

               
Cow position:
               
chr5:44054233-44053839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
72, 156
               

               
Conread position:
               
10-409
               

               
Cow position:
               
chr5:45226019-45225613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
10-409
               

               
Cow position:
               
chr5:56523978-56524369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
10-410
               

               
Cow position:
               
chr5:29353325-29352924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
10-411
               

               
Cow position:
               
chr5:3771651-3772051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
104, 83
               

               
Conread position:
               
10-411
               

               
Cow position:
               
chr5:26377862-26377471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 109
               

               
Conread position:
               
10-411
               

               
Cow position:
               
chr5:32339171-32338751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
72, 163
               

               
Conread position:
               
10-411
               

               
Cow position:
               
chr5:39936907-39937326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
91, 125
               

               
Conread position:
               
10-411
               

               
Cow position:
               
chr5:55756635-55756204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
10-412
               

               
Cow position:
               
chr5:24348916-24349300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 60
               

               
Conread position:
               
10-414
               

               
Cow position:
               
chr5:16938203-16937822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
93, 43
               

               
Conread position:
               
10-414
               

               
Cow position:
               
chr5:26097100-26097502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
56, 60
               

               
Conread position:
               
10-414
               

               
Cow position:
               
chr5:29827858-29828260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
10-414
               

               
Cow position:
               
chr5:34049914-34050320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
70, 292
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr5:12351977-12351599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr5:28224259-28224655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr5:30253549-30253953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr5:33414603-33414195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr5:35826395-35826811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 205
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr5:38853164-38853564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
70, 162
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr5:41303286-41302863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
70, 111
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr5:44796914-44796523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 58
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr5:53835519-53835934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 104
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr5:56028726-56028332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 188
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr5:6528485-6528878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 199
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr5:27154827-27155216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 40
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr5:34561813-34562223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 299
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr5:35684739-35685147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 141
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr5:36868550-36868951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
102, 84
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr5:42845796-42845383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
80, 206
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr5:45845891-45845476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 156
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr5:64321553-64321975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 123
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr5:68718687-68719081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 54
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:1105066-1104660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 196
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:2309759-2309343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
62, 167
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:3281636-3282052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
32, 26
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:3492006-3492400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
102, 70
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:6504075-6503661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 135
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:7044905-7044491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 7
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:9894321-9893910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:11229869-11229456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 191
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:11668374-11667969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 60
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:12149350-12149766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
93, 62
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:14314326-14314731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 298
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:14550781-14550367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 196
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:15363695-15364085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
72, 148
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:17087224-17086802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 172
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:18573975-18574397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
89, 137
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:20127859-20128269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:21617260-21617670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 125
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:21828669-21829079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 287
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:26133269-26132880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
89, 108
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:27179459-27179880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 57
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:28302935-28302541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 96
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:29903717-29903328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:30276496-30276902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 186
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:30844915-30845321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 162
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:32153511-32153096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
69, 75
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:32394405-32394817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
55, 155
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:32975747-32975343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 75
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:34506121-34505709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
89, 126
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:35763095-35763459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
152, 43
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:37941988-37941592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
63, 157
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:38832924-38833329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:39447726-39447310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 159
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:40889479-40889080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
89, 142
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:41164893-41165297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 74
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:42064007-42064422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
104, 52
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:43923345-43922956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
77, 141
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:44049507-44049915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
89, 51
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:44848212-44847812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
97, 48
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:45409130-45409540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
18, 66
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:47601621-47602023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 53
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:47871246-47870839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
70, 234
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:48154668-48154248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
70, 36
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:50722855-50723263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
73, 25
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:51053843-51053433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 132
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:52165378-52164958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 280
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:57074530-57074122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 295
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:57935309-57934905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 297
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:59326024-59325604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
113, 65
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:61576344-61576761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
67, 181
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:61600217-61600622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
72, 187
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:62172223-62172613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 64
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:63647670-63647262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 45
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:64176316-64175915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 157
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:65776581-65776162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
70, 183
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:65941449-65941035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 154
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:66257447-66257849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:66338888-66339288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 39
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr5:74643857-74643469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 42
               

               
Conread position:
               
10-418
               

               
Cow position:
               
chr5:5938129-5938546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
87, 140
               

               
Conread position:
               
10-418
               

               
Cow position:
               
chr5:55942593-55942161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 313
               

               
Conread position:
               
10-419
               

               
Cow position:
               
chr5:16893971-16893561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 132
               

               
Conread position:
               
10-419
               

               
Cow position:
               
chr5:35208066-35208480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 113
               

               
Conread position:
               
11-202
               

               
Cow position:
               
chr5:55821172-55821376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
11-217
               

               
Cow position:
               
chr5:20554944-20554731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 126
               

               
Conread position:
               
11-217
               

               
Cow position:
               
chr5:63185448-63185237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 124
               

               
Conread position:
               
11-226
               

               
Cow position:
               
chr5:1678204-1678422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 58
               

               
Conread position:
               
11-226
               

               
Cow position:
               
chr5:73252902-73253112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
84, 57
               

               
Conread position:
               
11-235
               

               
Cow position:
               
chr5:51357698-51357468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
71, 199
               

               
Conread position:
               
11-237
               

               
Cow position:
               
chr5:64844312-64844084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 49
               

               
Conread position:
               
11-243
               

               
Cow position:
               
chr5:47888909-47888670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
71, 177
               

               
Conread position:
               
11-244
               

               
Cow position:
               
chr5:60126179-60126415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
11-244
               

               
Cow position:
               
chr5:70050558-70050784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 125
               

               
Conread position:
               
11-285
               

               
Cow position:
               
chr5:34638691-34638967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 66
               

               
Conread position:
               
11-288
               

               
Cow position:
               
chr5:15598428-15598149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 161
               

               
Conread position:
               
11-335
               

               
Cow position:
               
chr5:65588513-65588832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
85, 57
               

               
Conread position:
               
11-359
               

               
Cow position:
               
chr5:4710337-4709995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
11-369
               

               
Cow position:
               
chr5:23169013-23168659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 54
               

               
Conread position:
               
11-405
               

               
Cow position:
               
chr5:53055747-53055356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
11-414
               

               
Cow position:
               
chr5:64137057-64137470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
95, 319
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr5:72903422-72903027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
11-417
               

               
Cow position:
               
chr5:5257491-5257072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
57, 314
               

               
Conread position:
               
11-417
               

               
Cow position:
               
chr5:16025655-16025268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
71, 154
               

               
Conread position:
               
11-417
               

               
Cow position:
               
chr5:19278886-19278488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
91, 37
               

               
Conread position:
               
11-417
               

               
Cow position:
               
chr5:35969348-35969755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 127
               

               
Conread position:
               
11-417
               

               
Cow position:
               
chr5:40109307-40109699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
11-417
               

               
Cow position:
               
chr5:47756574-47756987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
69, 139
               

               
Conread position:
               
12-154
               

               
Cow position:
               
chr5:66280985-66280840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
12-185
               

               
Cow position:
               
chr5:27690252-27690076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 110
               

               
Conread position:
               
12-190
               

               
Cow position:
               
chr5:30816522-30816707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
12-197
               

               
Cow position:
               
chr5:26099564-26099383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
150, 120
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr5:62027140-62026951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
100, 126
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chr5:29504916-29505112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
71, 123
               

               
Conread position:
               
12-206
               

               
Cow position:
               
chr5:33467234-33467039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 68
               

               
Conread position:
               
12-222
               

               
Cow position:
               
chr5:64392961-64393176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 187
               

               
Conread position:
               
12-223
               

               
Cow position:
               
chr5:42677041-42677254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
12-226
               

               
Cow position:
               
chr5:26046140-26046358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
60, 178
               

               
Conread position:
               
12-234
               

               
Cow position:
               
chr5:19470380-19470158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
71, 141
               

               
Conread position:
               
12-236
               

               
Cow position:
               
chr5:32956285-32956060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 26
               

               
Conread position:
               
12-241
               

               
Cow position:
               
chr5:34115469-34115691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
150, 50
               

               
Conread position:
               
12-242
               

               
Cow position:
               
chr5:44994231-44994000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
87, 152
               

               
Conread position:
               
12-242
               

               
Cow position:
               
chr5:46499105-46499338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 60
               

               
Conread position:
               
12-243
               

               
Cow position:
               
chr5:63840339-63840107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 73
               

               
Conread position:
               
12-244
               

               
Cow position:
               
chr5:4797504-4797281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
71, 55
               

               
Conread position:
               
12-268
               

               
Cow position:
               
chr5:32378676-32378912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
12-275
               

               
Cow position:
               
chr5:28456605-28456332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 122
               

               
Conread position:
               
12-275
               

               
Cow position:
               
chr5:28459907-28459633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 123
               

               
Conread position:
               
12-276
               

               
Cow position:
               
chr5:72007046-72006791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
87, 71
               

               
Conread position:
               
12-280
               

               
Cow position:
               
chr5:18898790-18899053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
86, 66
               

               
Conread position:
               
12-282
               

               
Cow position:
               
chr5:34184026-34184304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
70, 193
               

               
Conread position:
               
12-287
               

               
Cow position:
               
chr5:27419914-27419644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
94, 69
               

               
Conread position:
               
12-287
               

               
Cow position:
               
chr5:52645269-52644995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
87, 56
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr5:22643411-22643146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
87, 122
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr5:27102981-27102708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
150, 59
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr5:34300733-34300998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr5:37190292-37190011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 196
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr5:39299334-39299616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
73, 156
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr5:39442100-39442384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 116
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr5:39695459-39695738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr5:52000025-52000305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
70, 215
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr5:58855910-58856188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 196
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr5:72172830-72173113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
70, 133
               

               
Conread position:
               
12-289
               

               
Cow position:
               
chr5:58320655-58320383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
94, 58
               

               
Conread position:
               
12-298
               

               
Cow position:
               
chr5:29212755-29213034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
150, 52
               

               
Conread position:
               
12-339
               

               
Cow position:
               
chr5:27306125-27306441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 122
               

               
Conread position:
               
12-353
               

               
Cow position:
               
chr5:8821205-8820864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
70, 125
               

               
Conread position:
               
12-357
               

               
Cow position:
               
chr5:36855019-36855359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
22, 29
               

               
Conread position:
               
12-362
               

               
Cow position:
               
chr5:60715548-60715208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
240, 89
               

               
Conread position:
               
12-363
               

               
Cow position:
               
chr5:44752504-44752148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
86, 153
               

               
Conread position:
               
12-366
               

               
Cow position:
               
chr5:27615322-27615678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
32, 39
               

               
Conread position:
               
12-369
               

               
Cow position:
               
chr5:43457712-43457366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
62, 131
               

               
Conread position:
               
12-410
               

               
Cow position:
               
chr5:45705854-45706244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
87, 124
               

               
Conread position:
               
12-414
               

               
Cow position:
               
chr5:20779575-20779187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
87, 59
               

               
Conread position:
               
12-415
               

               
Cow position:
               
chr5:17999688-17999283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
92, 257
               

               
Conread position:
               
12-415
               

               
Cow position:
               
chr5:50483055-50482645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
137, 150
               

               
Conread position:
               
12-415
               

               
Cow position:
               
chr5:55967076-55966660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 187
               

               
Conread position:
               
12-416
               

               
Cow position:
               
chr5:45170169-45170576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
67, 125
               

               
Conread position:
               
12-416
               

               
Cow position:
               
chr5:57327596-57328011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
19, 191
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr5:1247083-1247478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
87, 106
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr5:4280270-4280659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
87, 73
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr5:6839272-6838864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
68, 149
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr5:12322994-12322596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 151
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr5:22737912-22738312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr5:23140766-23140373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 81
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr5:55176693-55177095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
66, 230
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr5:56467507-56467885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr5:60952467-60952877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
129, 73
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr5:72035278-72034884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
101, 120
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr5:72895499-72895901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
71, 50
               

               
Conread position:
               
12-420
               

               
Cow position:
               
chr5:37645880-37646293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
82, 73
               

               
Conread position:
               
12-420
               

               
Cow position:
               
chr5:60210333-60209928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
70, 101
               

               
Conread position:
               
13-160
               

               
Cow position:
               
chr5:50870349-50870503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
13-218
               

               
Cow position:
               
chr5:62173481-62173689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
81, 193
               

               
Conread position:
               
13-242
               

               
Cow position:
               
chr5:7140297-7140066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
13-365
               

               
Cow position:
               
chr5:26990201-26990551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
86, 72
               

               
Conread position:
               
13-410
               

               
Cow position:
               
chr5:65752664-65753068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 250
               

               
Conread position:
               
13-417
               

               
Cow position:
               
chr5:28324153-28324575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
35, 194
               

               
Conread position:
               
13-418
               

               
Cow position:
               
chr5:74003820-74003436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
90, 47
               

               
Conread position:
               
14-175
               

               
Cow position:
               
chr5:63388603-63388767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
68, 117
               

               
Conread position:
               
14-218
               

               
Cow position:
               
chr5:18090536-18090740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
85, 44
               

               
Conread position:
               
14-227
               

               
Cow position:
               
chr5:44587485-44587260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 223
               

               
Conread position:
               
14-244
               

               
Cow position:
               
chr5:34915950-34916173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 66
               

               
Conread position:
               
14-288
               

               
Cow position:
               
chr5:71454786-71454526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
85, 118
               

               
Conread position:
               
14-359
               

               
Cow position:
               
chr5:4032180-4031831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
69, 33
               

               
Conread position:
               
14-362
               

               
Cow position:
               
chr5:9090215-9089868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
68, 165
               

               
Conread position:
               
14-363
               

               
Cow position:
               
chr5:21040165-21039826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 71
               

               
Conread position:
               
14-417
               

               
Cow position:
               
chr5:22242977-22242559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 154
               

               
Conread position:
               
14-417
               

               
Cow position:
               
chr5:26262865-26262470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
14-417
               

               
Cow position:
               
chr5:67932653-67932251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 36
               

               
Conread position:
               
14-417
               

               
Cow position:
               
chr5:74610883-74610485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
63, 128
               

               
Conread position:
               
14-419
               

               
Cow position:
               
chr5:74858382-74858804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 133
               

               
Conread position:
               
15-179
               

               
Cow position:
               
chr5:57706725-57706897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
15-202
               

               
Cow position:
               
chr5:30808807-30808618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 151
               

               
Conread position:
               
15-216
               

               
Cow position:
               
chr5:31434075-31434275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
84, 147
               

               
Conread position:
               
15-227
               

               
Cow position:
               
chr5:7763882-7764099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
65, 174
               

               
Conread position:
               
15-227
               

               
Cow position:
               
chr5:10261429-10261208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 114
               

               
Conread position:
               
15-242
               

               
Cow position:
               
chr5:3639670-3639447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
15-242
               

               
Cow position:
               
chr5:42777574-42777805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
83, 70
               

               
Conread position:
               
15-311
               

               
Cow position:
               
chr5:50975695-50976014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
15-343
               

               
Cow position:
               
chr5:7723480-7723806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
84, 144
               

               
Conread position:
               
15-359
               

               
Cow position:
               
chr5:4220790-4221136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
65, 182
               

               
Conread position:
               
15-366
               

               
Cow position:
               
chr5:51151553-51151191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 164
               

               
Conread position:
               
15-411
               

               
Cow position:
               
chr5:69461144-69461541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 149
               

               
Conread position:
               
15-416
               

               
Cow position:
               
chr5:5855689-5856074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 55
               

               
Conread position:
               
16-242
               

               
Cow position:
               
chr5:66403954-66404174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
83, 118
               

               
Conread position:
               
16-287
               

               
Cow position:
               
chr5:7755742-7755484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
86, 43
               

               
Conread position:
               
16-415
               

               
Cow position:
               
chr5:57591501-57591897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
64, 124
               

               
Conread position:
               
16-416
               

               
Cow position:
               
chr5:48010036-48009667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 69
               

               
Conread position:
               
16-417
               

               
Cow position:
               
chr5:37064904-37065314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
64, 106
               

               
Conread position:
               
17-408
               

               
Cow position:
               
chr5:31469773-31469385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
82, 174
               

               
Conread position:
               
17-417
               

               
Cow position:
               
chr5:56070664-56071073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 291
               

               
Conread position:
               
18-242
               

               
Cow position:
               
chr5:49362179-49361952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 125
               

               
Conread position:
               
18-409
               

               
Cow position:
               
chr5:64524068-64523657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
65, 328
               

               
Conread position:
               
19-225
               

               
Cow position:
               
chr5:75828922-75828715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
42, 64
               

               
Conread position:
               
19-240
               

               
Cow position:
               
chr5:17644842-17644616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
20-415
               

               
Cow position:
               
chr5:52667844-52668252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
21-276
               

               
Cow position:
               
chr5:6670382-6670119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
61, 135
               

               
Conread position:
               
21-362
               

               
Cow position:
               
chr5:61810608-61810931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
86, 41
               

               
Conread position:
               
21-417
               

               
Cow position:
               
chr5:46512951-46512553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 22
               

               
Conread position:
               
22-362
               

               
Cow position:
               
chr5:37808848-37808506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
140, 53
               

               
Conread position:
               
22-417
               

               
Cow position:
               
chr5:24996409-24996006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 35
               

               
Conread position:
               
23-181
               

               
Cow position:
               
chr5:57576031-57576197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
23-288
               

               
Cow position:
               
chr5:55928760-55929030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
23-405
               

               
Cow position:
               
chr5:48828973-48829358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 15
               

               
Conread position:
               
23-412
               

               
Cow position:
               
chr5:17768326-17767943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 28
               

               
Conread position:
               
24-197
               

               
Cow position:
               
chr5:39242371-39242202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 47
               

               
Conread position:
               
24-200
               

               
Cow position:
               
chr5:66281230-66281406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 135
               

               
Conread position:
               
24-416
               

               
Cow position:
               
chr5:71722879-71723292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
41, 309
               

               
Conread position:
               
25-354
               

               
Cow position:
               
chr5:39258353-39258656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
27-394
               

               
Cow position:
               
chr5:44028480-44028113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 112
               

               
Conread position:
               
27-415
               

               
Cow position:
               
chr5:65136105-65136470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
28-211
               

               
Cow position:
               
chr5:36793859-36794046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
55, 121
               

               
Conread position:
               
29-288
               

               
Cow position:
               
chr5:38838234-38837968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
51, 160
               

               
Conread position:
               
29-288
               

               
Cow position:
               
chr5:43990217-43990483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
51, 173
               

               
Conread position:
               
29-288
               

               
Cow position:
               
chr5:45999201-45998935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
53, 160
               

               
Conread position:
               
29-405
               

               
Cow position:
               
chr5:57266074-57265699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
107, 56
               

               
Conread position:
               
29-416
               

               
Cow position:
               
chr5:31217235-31216839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 102
               

               
Conread position:
               
30-240
               

               
Cow position:
               
chr5:43816786-43816567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 8
               

               
Conread position:
               
30-288
               

               
Cow position:
               
chr5:62638730-62638990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 170
               

               
Conread position:
               
30-288
               

               
Cow position:
               
chr5:69520715-69520977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
55, 44
               

               
Conread position:
               
30-392
               

               
Cow position:
               
chr5:45472090-45472469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
52, 283
               

               
Conread position:
               
30-417
               

               
Cow position:
               
chr5:19778759-19778351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
31-153
               

               
Cow position:
               
chr5:45026092-45025967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
31-257
               

               
Cow position:
               
chr5:3627330-3627097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
52, 10
               

               
Conread position:
               
31-266
               

               
Cow position:
               
chr5:29980160-29979918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
51, 93
               

               
Conread position:
               
31-417
               

               
Cow position:
               
chr5:39333716-39333314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
31-417
               

               
Cow position:
               
chr5:62107669-62107269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
52, 179
               

               
Conread position:
               
32-417
               

               
Cow position:
               
chr5:3549951-3549590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
70, 36
               

               
Conread position:
               
32-417
               

               
Cow position:
               
chr5:19335967-19335562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
33-242
               

               
Cow position:
               
chr5:41452839-41452625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 61
               

               
Conread position:
               
35-180
               

               
Cow position:
               
chr5:61875348-61875206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 69
               

               
Conread position:
               
35-420
               

               
Cow position:
               
chr5:74580622-74581004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
45, 110
               

               
Conread position:
               
36-221
               

               
Cow position:
               
chr5:31223086-31222896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 149
               

               
Conread position:
               
37-362
               

               
Cow position:
               
chr5:30950088-30949755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
36, 269
               

               
Conread position:
               
38-288
               

               
Cow position:
               
chr5:7552586-7552330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
64, 187
               

               
Conread position:
               
38-353
               

               
Cow position:
               
chr5:56317127-56317438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
45, 99
               

               
Conread position:
               
38-414
               

               
Cow position:
               
chr5:64697613-64698000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
42, 111
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr5:30178678-30178287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
42, 273
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr5:41010164-41009795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 116
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr5:56014567-56014937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 110
               

               
Conread position:
               
39-362
               

               
Cow position:
               
chr5:59115214-59115539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 173
               

               
Conread position:
               
39-419
               

               
Cow position:
               
chr5:30629324-30628936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 264
               

               
Conread position:
               
40-408
               

               
Cow position:
               
chr5:65967897-65967527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
45, 126
               

               
Conread position:
               
40-417
               

               
Cow position:
               
chr5:55955740-55956125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
42-362
               

               
Cow position:
               
chr5:54060110-54060436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
47, 215
               

               
Conread position:
               
43-383
               

               
Cow position:
               
chr5:55068543-55068887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
22, 100
               

               
Conread position:
               
45-288
               

               
Cow position:
               
chr5:46426011-46425769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
54, 119
               

               
Conread position:
               
45-416
               

               
Cow position:
               
chr5:45397418-45397779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 112
               

               
Conread position:
               
45-417
               

               
Cow position:
               
chr5:35247271-35246892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
47-419
               

               
Cow position:
               
chr5:55232951-55232606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
267, 100
               

               
Conread position:
               
48-417
               

               
Cow position:
               
chr5:3582415-3582770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
49-288
               

               
Cow position:
               
chr5:67540360-67540115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
49-417
               

               
Cow position:
               
chr5:42050391-42050759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 184
               

               
Conread position:
               
50-417
               

               
Cow position:
               
chr5:47696598-47696245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
50-417
               

               
Cow position:
               
chr5:54048504-54048135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
63, 106
               

               
Conread position:
               
50-419
               

               
Cow position:
               
chr5:12673620-12673263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
53-199
               

               
Cow position:
               
chr5:31020285-31020140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 31
               

               
Conread position:
               
55-417
               

               
Cow position:
               
chr5:35459445-35459081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
32, 65
               

               
Conread position:
               
55-417
               

               
Cow position:
               
chr5:56877338-56877685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
56-417
               

               
Cow position:
               
chr5:12761265-12760905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 112
               

               
Conread position:
               
57-361
               

               
Cow position:
               
chr5:16206308-16205998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
26, 192
               

               
Conread position:
               
58-248
               

               
Cow position:
               
chr5:51801117-51800926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
61-359
               

               
Cow position:
               
chr5:64592237-64591940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
5, 100
               

               
Conread position:
               
62-354
               

               
Cow position:
               
chr5:63865648-63865958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 198
               

               
Conread position:
               
62-415
               

               
Cow position:
               
chr5:49919783-49920139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
63-200
               

               
Cow position:
               
chr5:19294628-19294492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 49
               

               
Conread position:
               
63-247
               

               
Cow position:
               
chr5:7921542-7921359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
39, 137
               

               
Conread position:
               
63-288
               

               
Cow position:
               
chr5:39874979-39875210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 123
               

               
Conread position:
               
63-288
               

               
Cow position:
               
chr5:65883922-65883686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
63-346
               

               
Cow position:
               
chr5:20422325-20422049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
64-415
               

               
Cow position:
               
chr5:44447008-44446662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 7
               

               
Conread position:
               
64-417
               

               
Cow position:
               
chr5:29097218-29097577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 197
               

               
Conread position:
               
64-418
               

               
Cow position:
               
chr5:70952021-70951677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
19, 134
               

               
Conread position:
               
67-417
               

               
Cow position:
               
chr5:25035384-25035039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
16, 129
               

               
Conread position:
               
69-416
               

               
Cow position:
               
chr5:72951703-72952038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
30, 235
               

               
Conread position:
               
69-417
               

               
Cow position:
               
chr5:991332-991689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
69-417
               

               
Cow position:
               
chr5:57101910-57101582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
70-241
               

               
Cow position:
               
chr5:38647224-38647394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
72-417
               

               
Cow position:
               
chr5:73168135-73167799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
15, 131
               

               
Conread position:
               
73-356
               

               
Cow position:
               
chr5:45574485-45574772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
75-354
               

               
Cow position:
               
chr5:45273631-45273350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 115
               

               
Conread position:
               
75-359
               

               
Cow position:
               
chr5:54768040-54767754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 133
               

               
Conread position:
               
75-362
               

               
Cow position:
               
chr5:44726456-44726175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
24, 124
               

               
Conread position:
               
75-408
               

               
Cow position:
               
chr5:57419925-57419590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
81-405
               

               
Cow position:
               
chr5:64027132-64026812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
25, 109
               

               
Conread position:
               
81-415
               

               
Cow position:
               
chr5:18289005-18289331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
26, 154
               

               
Conread position:
               
81-417
               

               
Cow position:
               
chr5:22666969-22667285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
83-295
               

               
Cow position:
               
chr5:50799418-50799627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
84-417
               

               
Cow position:
               
chr5:12557410-12557072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
94, 15
               

               
Conread position:
               
86-356
               

               
Cow position:
               
chr5:49440991-49440724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
87-366
               

               
Cow position:
               
chr5:19523779-19524066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 106
               

               
Conread position:
               
88-417
               

               
Cow position:
               
chr5:33560851-33560523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
11, 77
               

               
Conread position:
               
90-417
               

               
Cow position:
               
chr5:12901800-12902134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 133
               

               
Conread position:
               
92-362
               

               
Cow position:
               
chr5:13717684-13717408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 117
               

               
Conread position:
               
94-416
               

               
Cow position:
               
chr5:53946786-53947113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
64, 233
               

               
Conread position:
               
95-354
               

               
Cow position:
               
chr5:54375615-54375352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 167
               

               
Conread position:
               
97-357
               

               
Cow position:
               
chr5:62378685-62378933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
97-420
               

               
Cow position:
               
chr5:60016061-60016382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 174
               

               
Conread position:
               
98-288
               

               
Cow position:
               
chr5:35125949-35126141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 5
               

               
Conread position:
               
98-355
               

               
Cow position:
               
chr5:7697900-7698151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
64, 106
               

               
Conread position:
               
98-386
               

               
Cow position:
               
chr5:60183696-60183984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
65, 208
               

               
Conread position:
               
98-410
               

               
Cow position:
               
chr5:64168345-64168029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 177
               

               
Conread position:
               
98-417
               

               
Cow position:
               
chr5:12434430-12434750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
98-417
               

               
Cow position:
               
chr5:14921035-14920711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
98, 67
               

               
Conread position:
               
98-417
               

               
Cow position:
               
chr5:17555132-17554820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
64, 12
               

               
Conread position:
               
98-417
               

               
Cow position:
               
chr5:43371303-43370978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
19, 131
               

               
Conread position:
               
100-417
               

               
Cow position:
               
chr5:36039107-36038790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 51
               

               
Conread position:
               
105-415
               

               
Cow position:
               
chr5:33833947-33834253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
58, 11
               

               
Conread position:
               
105-417
               

               
Cow position:
               
chr5:57527015-57526712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
106-411
               

               
Cow position:
               
chr5:56548481-56548775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
51, 87
               

               
Conread position:
               
106-417
               

               
Cow position:
               
chr5:30232802-30233125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
40, 207
               

               
Conread position:
               
106-417
               

               
Cow position:
               
chr5:64555433-64555746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
111-415
               

               
Cow position:
               
chr5:31475592-31475897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
52, 82
               

               
Conread position:
               
111-415
               

               
Cow position:
               
chr5:59384782-59384473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 117
               

               
Conread position:
               
111-417
               

               
Cow position:
               
chr5:35976429-35976709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
120-417
               

               
Cow position:
               
chr5:43402817-43403124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
42, 194
               

               
Conread position:
               
121-417
               

               
Cow position:
               
chr5:70270783-70271082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
123-417
               

               
Cow position:
               
chr5:61914490-61914786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 39
               

               
Conread position:
               
124-417
               

               
Cow position:
               
chr5:19752226-19752516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
126-417
               

               
Cow position:
               
chr5:57756108-57755819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 102
               

               
Conread position:
               
131-417
               

               
Cow position:
               
chr5:6439105-6438810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
132-416
               

               
Cow position:
               
chr5:63234897-63234609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
141-417
               

               
Cow position:
               
chr5:30247586-30247310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 68
               

               
Conread position:
               
141-417
               

               
Cow position:
               
chr5:59627036-59626757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 162
               

               
Conread position:
               
146-417
               

               
Cow position:
               
chr5:20288320-20288043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 156
               

               
Conread position:
               
147-362
               

               
Cow position:
               
chr5:56339074-56338861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
149-347
               

               
Cow position:
               
chr5:35982793-35982592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
151-415
               

               
Cow position:
               
chr5:12654952-12654696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 41
               

               
Conread position:
               
157-417
               

               
Cow position:
               
chr5:63192788-63192539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
5, 114
               

               
Conread position:
               
160-393
               

               
Cow position:
               
chr5:17602243-17602014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
48, 65
               

               
Conread position:
               
161-417
               

               
Cow position:
               
chr5:69099677-69099934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
37, 140
               

               
Conread position:
               
165-415
               

               
Cow position:
               
chr5:66466281-66466526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
167-403
               

               
Cow position:
               
chr5:57686776-57686540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 135
               

               
Conread position:
               
167-417
               

               
Cow position:
               
chr5:22795178-22795421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
33, 103
               

               
Conread position:
               
167-417
               

               
Cow position:
               
chr5:50101413-50101163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
14, 162
               

               
Conread position:
               
167-417
               

               
Cow position:
               
chr5:51065496-51065730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
168-416
               

               
Cow position:
               
chr5:49501859-49501604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 134
               

               
Conread position:
               
169-417
               

               
Cow position:
               
chr5:26549175-26548928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
26, 134
               

               
Conread position:
               
182-417
               

               
Cow position:
               
chr5:45187140-45186900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
13, 122
               

               
Conread position:
               
188-417
               

               
Cow position:
               
chr5:17104839-17105060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
132, 81
               

               
Conread position:
               
192-411
               

               
Cow position:
               
chr5:73253400-73253614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
193-415
               

               
Cow position:
               
chr5:46541064-46540847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
194-417
               

               
Cow position:
               
chr5:69383247-69383466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
126, 107
               

               
Conread position:
               
195-417
               

               
Cow position:
               
chr5:60523726-60523942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
197-411
               

               
Cow position:
               
chr5:34915056-34914845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
122, 7
               

               
Conread position:
               
197-414
               

               
Cow position:
               
chr5:55965899-55965680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
94, 116
               

               
Conread position:
               
197-417
               

               
Cow position:
               
chr5:39035777-39035997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
166, 7
               

               
Conread position:
               
198-415
               

               
Cow position:
               
chr5:51298717-51298502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
201-392
               

               
Cow position:
               
chr5:38168893-38169083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 97
               

               
Conread position:
               
206-415
               

               
Cow position:
               
chr5:50824596-50824796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
108, 92
               

               
Conread position:
               
210-417
               

               
Cow position:
               
chr5:2240981-2240774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
110, 41
               

               
Conread position:
               
212-417
               

               
Cow position:
               
chr5:51247121-51246922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
125, 102
               

               
Conread position:
               
214-408
               

               
Cow position:
               
chr5:46704287-46704094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
96, 84
               

               
Conread position:
               
221-417
               

               
Cow position:
               
chr5:74039984-74039791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
226-415
               

               
Cow position:
               
chr5:35190134-35190319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 75
               

               
Conread position:
               
228-417
               

               
Cow position:
               
chr5:34288224-34288039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
92, 41
               

               
Conread position:
               
233-417
               

               
Cow position:
               
chr5:15991608-15991430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
255-417
               

               
Cow position:
               
chr5:29599493-29599337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
65, 46
               

               
Conread position:
               
255-419
               

               
Cow position:
               
chr5:49207274-49207112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
59, 46
               

               
Conread position:
               
259-417
               

               
Cow position:
               
chr5:21721413-21721260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 42
               

               
Conread position:
               
263-417
               

               
Cow position:
               
chr5:34787635-34787787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
57, 38
               
Show alignments to all cow chromosomes.