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Cow genome map

           
Conread name:
           
Ss1.1-rpfco0128_b15.5
        

               
Conread position:
               
1-147
               

               
Cow position:
               
chr9:53109785-53109642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
101, 61
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr9:16182228-16182406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr9:40542375-40542187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 63
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr9:5393312-5393109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
11, 123
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr9:18072857-18073073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr9:1984261-1984485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr9:28948113-28947873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr9:1712226-1712463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
98, 20
               

               
Conread position:
               
1-273
               

               
Cow position:
               
chr9:6225192-6225471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr9:35375685-35375395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
11, 96
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr9:4928890-4928566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
79, 232
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr9:31078823-31079182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 197
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr9:42445723-42446127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
98, 83
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr9:51204985-51204584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 188
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr9:5433896-5433486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr9:9753135-9753561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
9, 75
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr9:20681146-20681561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr9:20900869-20901277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
11, 59
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr9:24887458-24887046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 7
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr9:32306976-32307393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
15, 202
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr9:33823354-33822958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 13
               

               
Conread position:
               
1-417
               

               
Cow position:
               
chr9:52407430-52407011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
10, 310
               

               
Conread position:
               
2-123
               

               
Cow position:
               
chr9:51557104-51557231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
2-242
               

               
Cow position:
               
chr9:33681942-33681689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 53
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr9:5209842-5209553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
59, 210
               

               
Conread position:
               
2-288
               

               
Cow position:
               
chr9:2113745-2114038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 168
               

               
Conread position:
               
2-417
               

               
Cow position:
               
chr9:5327513-5327103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 179
               

               
Conread position:
               
2-417
               

               
Cow position:
               
chr9:9723624-9724038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 43
               

               
Conread position:
               
2-417
               

               
Cow position:
               
chr9:38793277-38792856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 199
               

               
Conread position:
               
3-288
               

               
Cow position:
               
chr9:44914837-44915128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
8, 65
               

               
Conread position:
               
3-417
               

               
Cow position:
               
chr9:20816106-20815707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
159, 75
               

               
Conread position:
               
3-417
               

               
Cow position:
               
chr9:55256292-55256708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
3-419
               

               
Cow position:
               
chr9:20848193-20847785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 281
               

               
Conread position:
               
4-163
               

               
Cow position:
               
chr9:41412057-41412225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr9:62400210-62400022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
158, 79
               

               
Conread position:
               
5-288
               

               
Cow position:
               
chr9:38614711-38614993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
94, 42
               

               
Conread position:
               
6-242
               

               
Cow position:
               
chr9:29092059-29091807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
7-235
               

               
Cow position:
               
chr9:27697477-27697702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
105, 162
               

               
Conread position:
               
7-415
               

               
Cow position:
               
chr9:3186396-3185972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
18, 314
               

               
Conread position:
               
8-172
               

               
Cow position:
               
chr9:37141480-37141318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
88, 76
               

               
Conread position:
               
8-359
               

               
Cow position:
               
chr9:64155604-64155951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
68, 185
               

               
Conread position:
               
8-362
               

               
Cow position:
               
chr9:1520478-1520842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
72, 205
               

               
Conread position:
               
8-362
               

               
Cow position:
               
chr9:8288869-8288513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
91, 278
               

               
Conread position:
               
8-362
               

               
Cow position:
               
chr9:9405803-9406156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
100, 27
               

               
Conread position:
               
8-362
               

               
Cow position:
               
chr9:18216848-18217202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
74, 138
               

               
Conread position:
               
8-362
               

               
Cow position:
               
chr9:18342975-18342626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
94, 77
               

               
Conread position:
               
8-391
               

               
Cow position:
               
chr9:9552339-9551958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 106
               

               
Conread position:
               
8-409
               

               
Cow position:
               
chr9:6952343-6951961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 136
               

               
Conread position:
               
8-417
               

               
Cow position:
               
chr9:41283278-41282853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
10-136
               

               
Cow position:
               
chr9:34400289-34400156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
10-137
               

               
Cow position:
               
chr9:20465463-20465596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
10-145
               

               
Cow position:
               
chr9:58131474-58131615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
10-154
               

               
Cow position:
               
chr9:1350195-1350343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
70, 91
               

               
Conread position:
               
10-157
               

               
Cow position:
               
chr9:26310808-26310655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
10-162
               

               
Cow position:
               
chr9:25969595-25969438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
10-172
               

               
Cow position:
               
chr9:3379366-3379209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
10-175
               

               
Cow position:
               
chr9:10877616-10877790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
10-186
               

               
Cow position:
               
chr9:9491043-9490863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 42
               

               
Conread position:
               
10-186
               

               
Cow position:
               
chr9:16218393-16218576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
52, 159
               

               
Conread position:
               
10-189
               

               
Cow position:
               
chr9:38875324-38875509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
10-190
               

               
Cow position:
               
chr9:25958664-25958486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
89, 22
               

               
Conread position:
               
10-190
               

               
Cow position:
               
chr9:33100890-33101070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
63, 130
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr9:53608144-53608335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
73, 11
               

               
Conread position:
               
10-198
               

               
Cow position:
               
chr9:36623202-36623386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
85, 51
               

               
Conread position:
               
10-198
               

               
Cow position:
               
chr9:45170919-45171109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
96, 50
               

               
Conread position:
               
10-200
               

               
Cow position:
               
chr9:41995964-41995766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
10-203
               

               
Cow position:
               
chr9:42585376-42585577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
10-212
               

               
Cow position:
               
chr9:42998221-42998422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
92, 31
               

               
Conread position:
               
10-216
               

               
Cow position:
               
chr9:5319879-5319675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
89, 138
               

               
Conread position:
               
10-217
               

               
Cow position:
               
chr9:5399969-5399768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
89, 122
               

               
Conread position:
               
10-218
               

               
Cow position:
               
chr9:37528706-37528490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
10-218
               

               
Cow position:
               
chr9:49983442-49983648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
89, 75
               

               
Conread position:
               
10-220
               

               
Cow position:
               
chr9:30749335-30749553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
10-220
               

               
Cow position:
               
chr9:49404003-49403796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
10-222
               

               
Cow position:
               
chr9:8868886-8869108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 146
               

               
Conread position:
               
10-224
               

               
Cow position:
               
chr9:22227836-22228047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
152, 62
               

               
Conread position:
               
10-226
               

               
Cow position:
               
chr9:28735728-28735513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
97, 120
               

               
Conread position:
               
10-227
               

               
Cow position:
               
chr9:3924866-3924664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 50
               

               
Conread position:
               
10-228
               

               
Cow position:
               
chr9:6880020-6879799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
72, 133
               

               
Conread position:
               
10-228
               

               
Cow position:
               
chr9:32732436-32732662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
89, 72
               

               
Conread position:
               
10-228
               

               
Cow position:
               
chr9:58439531-58439753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
63, 165
               

               
Conread position:
               
10-230
               

               
Cow position:
               
chr9:41653039-41652813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 189
               

               
Conread position:
               
10-234
               

               
Cow position:
               
chr9:34666659-34666443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
97, 35
               

               
Conread position:
               
10-234
               

               
Cow position:
               
chr9:35305870-35306095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
108, 61
               

               
Conread position:
               
10-235
               

               
Cow position:
               
chr9:30664528-30664758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 122
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chr9:18002699-18002934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chr9:26391018-26390789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
88, 110
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chr9:38961188-38961415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
88, 60
               

               
Conread position:
               
10-237
               

               
Cow position:
               
chr9:53602663-53602447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
102, 51
               

               
Conread position:
               
10-240
               

               
Cow position:
               
chr9:61997345-61997581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
72, 165
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr9:5532203-5531961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
10-241
               

               
Cow position:
               
chr9:34000366-34000604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
69, 161
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr9:1952019-1952255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr9:20738952-20738711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
104, 75
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr9:49764906-49764672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
62, 109
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr9:54997773-54998014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
72, 210
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr9:20810811-20811051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 152
               

               
Conread position:
               
10-243
               

               
Cow position:
               
chr9:34901865-34902094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
10-244
               

               
Cow position:
               
chr9:21840325-21840085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
89, 158
               

               
Conread position:
               
10-244
               

               
Cow position:
               
chr9:28773367-28773134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
10-245
               

               
Cow position:
               
chr9:32371510-32371745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
10-247
               

               
Cow position:
               
chr9:55074885-55075122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
10-252
               

               
Cow position:
               
chr9:29034789-29035031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
91, 58
               

               
Conread position:
               
10-260
               

               
Cow position:
               
chr9:4128534-4128784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
60, 186
               

               
Conread position:
               
10-262
               

               
Cow position:
               
chr9:23028044-23027799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 48
               

               
Conread position:
               
10-262
               

               
Cow position:
               
chr9:36999811-37000066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
63, 72
               

               
Conread position:
               
10-278
               

               
Cow position:
               
chr9:22361265-22360989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 121
               

               
Conread position:
               
10-285
               

               
Cow position:
               
chr9:3220373-3220108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
152, 37
               

               
Conread position:
               
10-285
               

               
Cow position:
               
chr9:9416157-9416423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
10-285
               

               
Cow position:
               
chr9:41789528-41789256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
10-286
               

               
Cow position:
               
chr9:5268806-5268524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 160
               

               
Conread position:
               
10-286
               

               
Cow position:
               
chr9:19714319-19714051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 48
               

               
Conread position:
               
10-286
               

               
Cow position:
               
chr9:36827375-36827106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 47
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr9:22114383-22114665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
83, 221
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr9:38344144-38343860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 266
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr9:47472946-47472656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
63, 181
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr9:49982847-49983119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 130
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr9:54610981-54611266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
72, 144
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr9:55890059-55889784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
60, 106
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:1950169-1949886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:4646078-4646356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
89, 77
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:5218929-5219203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
152, 73
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:5509974-5509693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
73, 156
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:6089347-6089057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:7363277-7362997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
66, 150
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:8534433-8534721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
66, 158
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:23430892-23431177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 156
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:35904501-35904776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
152, 86
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:37069319-37069589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
96, 185
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:43871222-43870944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:45756607-45756332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:50076316-50076033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 184
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:62357281-62357559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
91, 70
               

               
Conread position:
               
10-288
               

               
Cow position:
               
chr9:62657042-62656772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
74, 50
               

               
Conread position:
               
10-333
               

               
Cow position:
               
chr9:46316538-46316857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 70
               

               
Conread position:
               
10-344
               

               
Cow position:
               
chr9:5763380-5763717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 145
               

               
Conread position:
               
10-356
               

               
Cow position:
               
chr9:21888419-21888071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 194
               

               
Conread position:
               
10-356
               

               
Cow position:
               
chr9:55084047-55084398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
96, 117
               

               
Conread position:
               
10-358
               

               
Cow position:
               
chr9:5246099-5245753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
86, 60
               

               
Conread position:
               
10-359
               

               
Cow position:
               
chr9:33940857-33940506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
88, 198
               

               
Conread position:
               
10-359
               

               
Cow position:
               
chr9:56773329-56772976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
70, 25
               

               
Conread position:
               
10-360
               

               
Cow position:
               
chr9:44467099-44467441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 175
               

               
Conread position:
               
10-360
               

               
Cow position:
               
chr9:64559637-64559983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
101, 81
               

               
Conread position:
               
10-361
               

               
Cow position:
               
chr9:9461405-9461760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
89, 226
               

               
Conread position:
               
10-361
               

               
Cow position:
               
chr9:54528765-54528411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
72, 199
               

               
Conread position:
               
10-362
               

               
Cow position:
               
chr9:3782613-3782267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
73, 46
               

               
Conread position:
               
10-362
               

               
Cow position:
               
chr9:17310312-17310667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
74, 42
               

               
Conread position:
               
10-362
               

               
Cow position:
               
chr9:22696467-22696120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
10-362
               

               
Cow position:
               
chr9:31814128-31814489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
102, 79
               

               
Conread position:
               
10-362
               

               
Cow position:
               
chr9:36445872-36445509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
10-362
               

               
Cow position:
               
chr9:59386527-59386874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
83, 60
               

               
Conread position:
               
10-363
               

               
Cow position:
               
chr9:7634517-7634167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
10-366
               

               
Cow position:
               
chr9:11068219-11068586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
10-369
               

               
Cow position:
               
chr9:39681606-39681228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
10-374
               

               
Cow position:
               
chr9:9199534-9199892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
89, 117
               

               
Conread position:
               
10-375
               

               
Cow position:
               
chr9:29841137-29840786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 61
               

               
Conread position:
               
10-376
               

               
Cow position:
               
chr9:44831805-44832169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 77
               

               
Conread position:
               
10-379
               

               
Cow position:
               
chr9:48106869-48107232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
8, 145
               

               
Conread position:
               
10-380
               

               
Cow position:
               
chr9:9443347-9443733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
89, 204
               

               
Conread position:
               
10-382
               

               
Cow position:
               
chr9:31077428-31077797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 126
               

               
Conread position:
               
10-389
               

               
Cow position:
               
chr9:52505053-52505440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
70, 187
               

               
Conread position:
               
10-390
               

               
Cow position:
               
chr9:7410032-7409638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
88, 313
               

               
Conread position:
               
10-390
               

               
Cow position:
               
chr9:20416259-20416646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
72, 126
               

               
Conread position:
               
10-392
               

               
Cow position:
               
chr9:57896875-57897237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
92, 52
               

               
Conread position:
               
10-393
               

               
Cow position:
               
chr9:48118452-48118820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
86, 45
               

               
Conread position:
               
10-400
               

               
Cow position:
               
chr9:17740694-17741083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 160
               

               
Conread position:
               
10-408
               

               
Cow position:
               
chr9:10144222-10144635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 243
               

               
Conread position:
               
10-409
               

               
Cow position:
               
chr9:23388428-23388831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 166
               

               
Conread position:
               
10-410
               

               
Cow position:
               
chr9:26278923-26279325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 113
               

               
Conread position:
               
10-411
               

               
Cow position:
               
chr9:5442242-5441858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
72, 25
               

               
Conread position:
               
10-411
               

               
Cow position:
               
chr9:13205320-13205720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
10-411
               

               
Cow position:
               
chr9:29006810-29006406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 43
               

               
Conread position:
               
10-411
               

               
Cow position:
               
chr9:31626399-31625978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
72, 143
               

               
Conread position:
               
10-411
               

               
Cow position:
               
chr9:56453582-56453193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 158
               

               
Conread position:
               
10-414
               

               
Cow position:
               
chr9:18215659-18216068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
100, 178
               

               
Conread position:
               
10-414
               

               
Cow position:
               
chr9:24726428-24726824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
89, 70
               

               
Conread position:
               
10-414
               

               
Cow position:
               
chr9:55287641-55288045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
27, 156
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr9:648025-647616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 12
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr9:5594750-5594344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
93, 148
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr9:13670886-13670479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
70, 145
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr9:17634581-17634982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
70, 158
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr9:20321866-20322249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
10, 16
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr9:25964574-25964997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
65, 300
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr9:30402170-30402586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
83, 58
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr9:34697045-34697459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
67, 197
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr9:37017134-37016742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
91, 133
               

               
Conread position:
               
10-415
               

               
Cow position:
               
chr9:53257810-53258213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
97, 65
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr9:22443361-22443781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
51, 204
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr9:22638350-22637941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
92, 62
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr9:29184883-29185298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 298
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr9:30138376-30137965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
92, 79
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr9:42498079-42497670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 294
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr9:50976996-50977414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 171
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr9:63905354-63905773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 194
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:5226914-5227319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 218
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:5501101-5500705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 63
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:5756753-5757136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 104
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:5836412-5835991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
80, 304
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:6192209-6192616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 129
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:8998605-8998194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:9516520-9516907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 151
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:9595704-9596109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 180
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:10118415-10118825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 185
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:11299447-11299832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:13994438-13994000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
66, 239
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:14974676-14975088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
72, 184
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:15215431-15215849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 297
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:15805671-15806085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 125
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:16300321-16300733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:19539347-19538941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 185
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:20318328-20318733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
89, 125
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:20406888-20406496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
63, 159
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:21459907-21460312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 111
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:22151837-22152241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 77
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:22318588-22318202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
151, 60
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:26086317-26085898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
72, 158
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:26344734-26345121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 48
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:26404039-26403636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 201
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:28726476-28726888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:28747272-28747677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 61
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:31347204-31346790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 108
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:33598231-33597814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 181
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:34287044-34286639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 38
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:34374679-34375086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 41
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:35167418-35167010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:36490645-36491063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 50
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:41416601-41416171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
86, 74
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:43207129-43207537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:44710072-44709674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
96, 14
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:47906039-47906444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:50606703-50607089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 62
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:51566237-51566657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:51620686-51620285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 210
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:52484667-52485071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
95, 155
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:52689374-52689773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
70, 131
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:54681752-54681362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 75
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:54716372-54716776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
91, 10
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:55118328-55117923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:55796008-55795599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
71, 119
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:58979651-58979246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 244
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:59013085-59013497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 49
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:61739167-61738762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
93, 50
               

               
Conread position:
               
10-417
               

               
Cow position:
               
chr9:63784675-63785068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
10-419
               

               
Cow position:
               
chr9:9402935-9403332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
11-192
               

               
Cow position:
               
chr9:48343851-48343666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 153
               

               
Conread position:
               
11-202
               

               
Cow position:
               
chr9:57951080-57951270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
11-227
               

               
Cow position:
               
chr9:60037905-60037680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
11-239
               

               
Cow position:
               
chr9:5621781-5622020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
11-241
               

               
Cow position:
               
chr9:27077002-27077226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
11-242
               

               
Cow position:
               
chr9:10092144-10092379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
88, 46
               

               
Conread position:
               
11-287
               

               
Cow position:
               
chr9:63746053-63745785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
101, 63
               

               
Conread position:
               
11-288
               

               
Cow position:
               
chr9:5161817-5162081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
95, 69
               

               
Conread position:
               
11-288
               

               
Cow position:
               
chr9:39577983-39577707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
62, 104
               

               
Conread position:
               
11-289
               

               
Cow position:
               
chr9:8951152-8950872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 51
               

               
Conread position:
               
11-351
               

               
Cow position:
               
chr9:9624779-9625103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
71, 38
               

               
Conread position:
               
11-356
               

               
Cow position:
               
chr9:64091937-64091582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
64, 298
               

               
Conread position:
               
11-361
               

               
Cow position:
               
chr9:60110482-60110150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
95, 51
               

               
Conread position:
               
11-409
               

               
Cow position:
               
chr9:33119633-33120039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 296
               

               
Conread position:
               
11-415
               

               
Cow position:
               
chr9:21030565-21030147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
68, 206
               

               
Conread position:
               
11-417
               

               
Cow position:
               
chr9:1751583-1751170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
86, 120
               

               
Conread position:
               
11-417
               

               
Cow position:
               
chr9:6933823-6934240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 42
               

               
Conread position:
               
11-417
               

               
Cow position:
               
chr9:8937397-8936989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 132
               

               
Conread position:
               
11-417
               

               
Cow position:
               
chr9:13169419-13169824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 51
               

               
Conread position:
               
11-417
               

               
Cow position:
               
chr9:18252674-18253079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
62, 95
               

               
Conread position:
               
11-417
               

               
Cow position:
               
chr9:48564344-48563919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
66, 159
               

               
Conread position:
               
11-419
               

               
Cow position:
               
chr9:10011049-10010651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
95, 60
               

               
Conread position:
               
11-419
               

               
Cow position:
               
chr9:20091287-20090899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 9
               

               
Conread position:
               
12-141
               

               
Cow position:
               
chr9:29338785-29338921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
12-160
               

               
Cow position:
               
chr9:35101115-35100965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
12-171
               

               
Cow position:
               
chr9:17785213-17785374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
87, 73
               

               
Conread position:
               
12-180
               

               
Cow position:
               
chr9:3807489-3807664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 145
               

               
Conread position:
               
12-188
               

               
Cow position:
               
chr9:61846902-61847082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
12-197
               

               
Cow position:
               
chr9:52724968-52725155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 132
               

               
Conread position:
               
12-201
               

               
Cow position:
               
chr9:32812596-32812399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
12-202
               

               
Cow position:
               
chr9:34762602-34762793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 110
               

               
Conread position:
               
12-206
               

               
Cow position:
               
chr9:9200477-9200672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 151
               

               
Conread position:
               
12-206
               

               
Cow position:
               
chr9:26828573-26828772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
70, 160
               

               
Conread position:
               
12-206
               

               
Cow position:
               
chr9:58204914-58204714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
57, 113
               

               
Conread position:
               
12-222
               

               
Cow position:
               
chr9:36067154-36066940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
108, 73
               

               
Conread position:
               
12-225
               

               
Cow position:
               
chr9:20839862-20839648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
90, 80
               

               
Conread position:
               
12-234
               

               
Cow position:
               
chr9:62360981-62361212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
12-235
               

               
Cow position:
               
chr9:39971281-39971069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
150, 23
               

               
Conread position:
               
12-241
               

               
Cow position:
               
chr9:25657762-25657525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 199
               

               
Conread position:
               
12-241
               

               
Cow position:
               
chr9:59795032-59795273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
12-242
               

               
Cow position:
               
chr9:29108785-29108551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 26
               

               
Conread position:
               
12-242
               

               
Cow position:
               
chr9:58133774-58134005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 135
               

               
Conread position:
               
12-244
               

               
Cow position:
               
chr9:34919018-34919247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
100, 87
               

               
Conread position:
               
12-261
               

               
Cow position:
               
chr9:34742480-34742728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
71, 131
               

               
Conread position:
               
12-280
               

               
Cow position:
               
chr9:3411018-3410759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
24, 164
               

               
Conread position:
               
12-286
               

               
Cow position:
               
chr9:34468345-34468607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
94, 15
               

               
Conread position:
               
12-287
               

               
Cow position:
               
chr9:35850147-35849874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 152
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr9:3932215-3931930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 217
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr9:4861640-4861353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
70, 266
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr9:20989206-20989489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
96, 173
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr9:24997268-24997550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr9:44108582-44108865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
12-288
               

               
Cow position:
               
chr9:54924874-54924587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 273
               

               
Conread position:
               
12-289
               

               
Cow position:
               
chr9:19637390-19637660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
71, 126
               

               
Conread position:
               
12-359
               

               
Cow position:
               
chr9:8338278-8337923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 122
               

               
Conread position:
               
12-414
               

               
Cow position:
               
chr9:38846101-38846497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
150, 73
               

               
Conread position:
               
12-415
               

               
Cow position:
               
chr9:8724044-8723638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
70, 140
               

               
Conread position:
               
12-416
               

               
Cow position:
               
chr9:56087821-56088236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr9:17871859-17872266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 79
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr9:23541170-23541559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
150, 56
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr9:31640070-31640486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
81, 73
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr9:33218704-33219116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
94, 140
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr9:41679983-41679603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr9:45285283-45285698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 136
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr9:47869255-47868865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
68, 113
               

               
Conread position:
               
12-417
               

               
Cow position:
               
chr9:61544897-61544504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
71, 152
               

               
Conread position:
               
13-416
               

               
Cow position:
               
chr9:52578286-52578696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 132
               

               
Conread position:
               
13-417
               

               
Cow position:
               
chr9:8997803-8997398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
67, 183
               

               
Conread position:
               
14-160
               

               
Cow position:
               
chr9:22616869-22616722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
14-207
               

               
Cow position:
               
chr9:27052087-27052290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
14-219
               

               
Cow position:
               
chr9:8546564-8546362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 128
               

               
Conread position:
               
14-261
               

               
Cow position:
               
chr9:33388662-33388904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
80, 48
               

               
Conread position:
               
14-284
               

               
Cow position:
               
chr9:35533705-35533980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
85, 71
               

               
Conread position:
               
14-358
               

               
Cow position:
               
chr9:14796532-14796869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
14-359
               

               
Cow position:
               
chr9:50080800-50081140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
84, 183
               

               
Conread position:
               
14-362
               

               
Cow position:
               
chr9:50139527-50139182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
85, 56
               

               
Conread position:
               
14-379
               

               
Cow position:
               
chr9:824201-823838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
94, 43
               

               
Conread position:
               
14-415
               

               
Cow position:
               
chr9:3070177-3070574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
98, 79
               

               
Conread position:
               
14-417
               

               
Cow position:
               
chr9:12428261-12428662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
66, 10
               

               
Conread position:
               
14-417
               

               
Cow position:
               
chr9:34689366-34689764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
15-237
               

               
Cow position:
               
chr9:41773125-41773360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
81, 70
               

               
Conread position:
               
15-242
               

               
Cow position:
               
chr9:18162910-18163144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
70, 157
               

               
Conread position:
               
15-261
               

               
Cow position:
               
chr9:35359857-35360108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
15-287
               

               
Cow position:
               
chr9:13181811-13182084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
68, 152
               

               
Conread position:
               
15-362
               

               
Cow position:
               
chr9:8563086-8562719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 272
               

               
Conread position:
               
15-416
               

               
Cow position:
               
chr9:34957806-34958210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 144
               

               
Conread position:
               
15-417
               

               
Cow position:
               
chr9:9573580-9573161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
60, 312
               

               
Conread position:
               
15-417
               

               
Cow position:
               
chr9:20942365-20942778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
81, 213
               

               
Conread position:
               
15-417
               

               
Cow position:
               
chr9:32238627-32238212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 193
               

               
Conread position:
               
15-417
               

               
Cow position:
               
chr9:36410107-36410509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
65, 187
               

               
Conread position:
               
15-417
               

               
Cow position:
               
chr9:43757768-43757385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 64
               

               
Conread position:
               
15-417
               

               
Cow position:
               
chr9:52131263-52130853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
86, 33
               

               
Conread position:
               
16-245
               

               
Cow position:
               
chr9:19542153-19541917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
75, 69
               

               
Conread position:
               
16-279
               

               
Cow position:
               
chr9:35203128-35202854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 259
               

               
Conread position:
               
16-373
               

               
Cow position:
               
chr9:766906-767266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
16-380
               

               
Cow position:
               
chr9:1729432-1729799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
82, 68
               

               
Conread position:
               
16-390
               

               
Cow position:
               
chr9:41513863-41513505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
102, 75
               

               
Conread position:
               
16-415
               

               
Cow position:
               
chr9:64106150-64105746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
87, 19
               

               
Conread position:
               
16-417
               

               
Cow position:
               
chr9:32815882-32815493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
146, 69
               

               
Conread position:
               
16-417
               

               
Cow position:
               
chr9:49710088-49709681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
57, 176
               

               
Conread position:
               
16-418
               

               
Cow position:
               
chr9:61022855-61022461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
17-241
               

               
Cow position:
               
chr9:40604193-40603961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
62, 191
               

               
Conread position:
               
17-420
               

               
Cow position:
               
chr9:6840254-6839830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
65, 305
               

               
Conread position:
               
18-279
               

               
Cow position:
               
chr9:44921164-44921415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
21-411
               

               
Cow position:
               
chr9:29825275-29824863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
78, 254
               

               
Conread position:
               
22-229
               

               
Cow position:
               
chr9:5238634-5238424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
60, 147
               

               
Conread position:
               
22-362
               

               
Cow position:
               
chr9:11319394-11319739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
61, 41
               

               
Conread position:
               
23-265
               

               
Cow position:
               
chr9:50702875-50703119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
57, 149
               

               
Conread position:
               
23-417
               

               
Cow position:
               
chr9:45141368-45141755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 89
               

               
Conread position:
               
24-243
               

               
Cow position:
               
chr9:59507317-59507103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 38
               

               
Conread position:
               
25-417
               

               
Cow position:
               
chr9:35027938-35028326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
5, 14
               

               
Conread position:
               
26-417
               

               
Cow position:
               
chr9:52619886-52619487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
54, 130
               

               
Conread position:
               
27-284
               

               
Cow position:
               
chr9:12175933-12175668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
56, 185
               

               
Conread position:
               
27-369
               

               
Cow position:
               
chr9:4267747-4268094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 157
               

               
Conread position:
               
27-416
               

               
Cow position:
               
chr9:46981000-46981380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
118, 11
               

               
Conread position:
               
28-226
               

               
Cow position:
               
chr9:31292920-31292720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
71, 163
               

               
Conread position:
               
28-417
               

               
Cow position:
               
chr9:43623492-43623106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 116
               

               
Conread position:
               
29-242
               

               
Cow position:
               
chr9:33038227-33038449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
53, 118
               

               
Conread position:
               
29-417
               

               
Cow position:
               
chr9:40302894-40303294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
54, 287
               

               
Conread position:
               
29-417
               

               
Cow position:
               
chr9:62724777-62724383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 60
               

               
Conread position:
               
30-288
               

               
Cow position:
               
chr9:1916517-1916256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
43, 167
               

               
Conread position:
               
30-417
               

               
Cow position:
               
chr9:6339032-6338634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
50, 283
               

               
Conread position:
               
31-251
               

               
Cow position:
               
chr9:50667653-50667425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
33-415
               

               
Cow position:
               
chr9:30477557-30477929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
66, 52
               

               
Conread position:
               
33-417
               

               
Cow position:
               
chr9:53762928-53762540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 125
               

               
Conread position:
               
34-214
               

               
Cow position:
               
chr9:32829790-32829967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
128, 40
               

               
Conread position:
               
35-288
               

               
Cow position:
               
chr9:28354743-28354486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
61, 127
               

               
Conread position:
               
35-362
               

               
Cow position:
               
chr9:9654091-9654412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
36-417
               

               
Cow position:
               
chr9:26440572-26440974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
38-244
               

               
Cow position:
               
chr9:1997360-1997150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 126
               

               
Conread position:
               
38-357
               

               
Cow position:
               
chr9:11313285-11313612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
38-362
               

               
Cow position:
               
chr9:1973164-1972845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
60, 168
               

               
Conread position:
               
38-416
               

               
Cow position:
               
chr9:43048404-43048775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
69, 171
               

               
Conread position:
               
38-417
               

               
Cow position:
               
chr9:27279540-27279147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
45, 171
               

               
Conread position:
               
39-361
               

               
Cow position:
               
chr9:1938347-1938022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
67, 44
               

               
Conread position:
               
40-241
               

               
Cow position:
               
chr9:1879596-1879396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 129
               

               
Conread position:
               
40-390
               

               
Cow position:
               
chr9:44833745-44834097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
53, 46
               

               
Conread position:
               
40-417
               

               
Cow position:
               
chr9:17799850-17799476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
42-417
               

               
Cow position:
               
chr9:48628250-48627864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 103
               

               
Conread position:
               
44-258
               

               
Cow position:
               
chr9:30195429-30195213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
38, 101
               

               
Conread position:
               
44-362
               

               
Cow position:
               
chr9:33093170-33092851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
55, 128
               

               
Conread position:
               
45-417
               

               
Cow position:
               
chr9:11123277-11123639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
118, 23
               

               
Conread position:
               
45-420
               

               
Cow position:
               
chr9:51720689-51721049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
48-416
               

               
Cow position:
               
chr9:9815630-9815255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
17, 131
               

               
Conread position:
               
49-417
               

               
Cow position:
               
chr9:52637945-52638329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
49-417
               

               
Cow position:
               
chr9:58614704-58614338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
34, 150
               

               
Conread position:
               
50-417
               

               
Cow position:
               
chr9:61303217-61302844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 216
               

               
Conread position:
               
53-416
               

               
Cow position:
               
chr9:6397570-6397944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
54-288
               

               
Cow position:
               
chr9:19493253-19493497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
54-288
               

               
Cow position:
               
chr9:49417193-49416956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
52, 145
               

               
Conread position:
               
55-363
               

               
Cow position:
               
chr9:3738013-3738326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 134
               

               
Conread position:
               
57-240
               

               
Cow position:
               
chr9:14358365-14358180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
41, 151
               

               
Conread position:
               
58-417
               

               
Cow position:
               
chr9:47500001-47500359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 255
               

               
Conread position:
               
59-417
               

               
Cow position:
               
chr9:58447922-58448285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 99
               

               
Conread position:
               
63-288
               

               
Cow position:
               
chr9:60027392-60027166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 22
               

               
Conread position:
               
64-417
               

               
Cow position:
               
chr9:4340970-4341315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 129
               

               
Conread position:
               
67-415
               

               
Cow position:
               
chr9:12910202-12910557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 138
               

               
Conread position:
               
67-417
               

               
Cow position:
               
chr9:30124113-30123771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 104
               

               
Conread position:
               
68-287
               

               
Cow position:
               
chr9:24873020-24872806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
124, 23
               

               
Conread position:
               
69-416
               

               
Cow position:
               
chr9:21080749-21080415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
93, 21
               

               
Conread position:
               
69-417
               

               
Cow position:
               
chr9:19067968-19067610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
69-417
               

               
Cow position:
               
chr9:19555565-19555230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
69-417
               

               
Cow position:
               
chr9:25805023-25804669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
44, 92
               

               
Conread position:
               
69-420
               

               
Cow position:
               
chr9:41728446-41728098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
75-240
               

               
Cow position:
               
chr9:31638456-31638626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
77-262
               

               
Cow position:
               
chr9:4323975-4324162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 131
               

               
Conread position:
               
79-288
               

               
Cow position:
               
chr9:49292968-49293174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
81-288
               

               
Cow position:
               
chr9:43875543-43875750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
81-390
               

               
Cow position:
               
chr9:11168909-11168604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
18, 117
               

               
Conread position:
               
81-411
               

               
Cow position:
               
chr9:40215422-40215094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 128
               

               
Conread position:
               
81-411
               

               
Cow position:
               
chr9:52267581-52267915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
81-417
               

               
Cow position:
               
chr9:8901045-8901388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
20, 250
               

               
Conread position:
               
86-379
               

               
Cow position:
               
chr9:6596065-6596346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
86-417
               

               
Cow position:
               
chr9:25557139-25556824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
18, 56
               

               
Conread position:
               
88-417
               

               
Cow position:
               
chr9:60394879-60395208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 110
               

               
Conread position:
               
89-417
               

               
Cow position:
               
chr9:26477387-26477053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
10, 68
               

               
Conread position:
               
91-417
               

               
Cow position:
               
chr9:5263669-5263345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
12, 43
               

               
Conread position:
               
94-245
               

               
Cow position:
               
chr9:42509278-42509128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 61
               

               
Conread position:
               
97-380
               

               
Cow position:
               
chr9:41394494-41394772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
204, 58
               

               
Conread position:
               
97-417
               

               
Cow position:
               
chr9:5456013-5456331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
18, 95
               

               
Conread position:
               
98-267
               

               
Cow position:
               
chr9:31270939-31270768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 101
               

               
Conread position:
               
98-417
               

               
Cow position:
               
chr9:39011317-39011626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
108, 60
               

               
Conread position:
               
99-417
               

               
Cow position:
               
chr9:19034499-19034195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
103-417
               

               
Cow position:
               
chr9:33114500-33114180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
108-417
               

               
Cow position:
               
chr9:7953049-7952743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
206, 44
               

               
Conread position:
               
109-417
               

               
Cow position:
               
chr9:32669799-32670105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
111-417
               

               
Cow position:
               
chr9:8628776-8629071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
111-417
               

               
Cow position:
               
chr9:47590838-47591143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 51
               

               
Conread position:
               
116-416
               

               
Cow position:
               
chr9:1756003-1756309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 109
               

               
Conread position:
               
120-420
               

               
Cow position:
               
chr9:31359738-31359443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
121-288
               

               
Cow position:
               
chr9:41486104-41486274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
121-415
               

               
Cow position:
               
chr9:48730564-48730271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
121-417
               

               
Cow position:
               
chr9:6189235-6189522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
41, 82
               

               
Conread position:
               
121-417
               

               
Cow position:
               
chr9:34410259-34410552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
42, 85
               

               
Conread position:
               
121-417
               

               
Cow position:
               
chr9:40005612-40005318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
122-417
               

               
Cow position:
               
chr9:13743797-13744093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
185, 40
               

               
Conread position:
               
137-411
               

               
Cow position:
               
chr9:33584562-33584837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
140-414
               

               
Cow position:
               
chr9:54493255-54492982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
141-415
               

               
Cow position:
               
chr9:38941315-38941594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
141-416
               

               
Cow position:
               
chr9:53109369-53109093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 125
               

               
Conread position:
               
141-417
               

               
Cow position:
               
chr9:41785337-41785062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 171
               

               
Conread position:
               
141-417
               

               
Cow position:
               
chr9:58131847-58132107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
141-420
               

               
Cow position:
               
chr9:9311976-9311697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
22, 5
               

               
Conread position:
               
144-417
               

               
Cow position:
               
chr9:23955870-23956136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
18, 49
               

               
Conread position:
               
145-417
               

               
Cow position:
               
chr9:52511227-52510956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 111
               

               
Conread position:
               
148-348
               

               
Cow position:
               
chr9:28754929-28754728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 156
               

               
Conread position:
               
154-357
               

               
Cow position:
               
chr9:23797339-23797139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
154-414
               

               
Cow position:
               
chr9:29194919-29195188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
161-417
               

               
Cow position:
               
chr9:17840579-17840838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
37, 141
               

               
Conread position:
               
164-417
               

               
Cow position:
               
chr9:9460068-9459830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
165-417
               

               
Cow position:
               
chr9:37199215-37198968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
155, 35
               

               
Conread position:
               
169-415
               

               
Cow position:
               
chr9:34024789-34024542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 134
               

               
Conread position:
               
172-417
               

               
Cow position:
               
chr9:9686329-9686577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
180-417
               

               
Cow position:
               
chr9:43159829-43159596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
187-414
               

               
Cow position:
               
chr9:57131564-57131342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
193-417
               

               
Cow position:
               
chr9:23970832-23971052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
87, 109
               

               
Conread position:
               
194-416
               

               
Cow position:
               
chr9:63361656-63361869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
120, 104
               

               
Conread position:
               
198-415
               

               
Cow position:
               
chr9:5104344-5104567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 80
               

               
Conread position:
               
199-415
               

               
Cow position:
               
chr9:36628176-36627965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
121, 102
               

               
Conread position:
               
201-414
               

               
Cow position:
               
chr9:49402707-49402492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 100
               

               
Conread position:
               
205-416
               

               
Cow position:
               
chr9:4241458-4241249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
98, 130
               

               
Conread position:
               
214-417
               

               
Cow position:
               
chr9:11098413-11098610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
106, 38
               

               
Conread position:
               
215-416
               

               
Cow position:
               
chr9:22165671-22165875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
104, 82
               

               
Conread position:
               
227-419
               

               
Cow position:
               
chr9:34707282-34707471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 68
               

               
Conread position:
               
228-416
               

               
Cow position:
               
chr9:40603697-40603509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 45
               

               
Conread position:
               
228-417
               

               
Cow position:
               
chr9:42508861-42508669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
87, 61
               

               
Conread position:
               
236-416
               

               
Cow position:
               
chr9:26394329-26394506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
239-415
               

               
Cow position:
               
chr9:40984523-40984347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
80, 62
               

               
Conread position:
               
240-417
               

               
Cow position:
               
chr9:32052293-32052117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
80, 63
               

               
Conread position:
               
255-417
               

               
Cow position:
               
chr9:45740140-45740303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
65, 49
               
Show alignments to all cow chromosomes.