Cow genome map
| Conread name: | Ss1.1-rpgl01_e1.5 |
| Conread position: | 1-204 |
| Cow position: | chr14:3127432-3127233 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 1-205 |
| Cow position: | chr14:447927-448131 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-205 |
| Cow position: | chr14:3061319-3061115 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-205 |
| Cow position: | chr14:3061571-3061367 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-205 |
| Cow position: | chr14:25895452-25895656 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 60 |
| Conread position: | 1-213 |
| Cow position: | chr14:3061067-3060854 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 41, 48 |
| Conread position: | 1-216 |
| Cow position: | chr14:3080508-3080292 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 177, 184 |
| Conread position: | 1-232 |
| Cow position: | chr14:3061739-3061507 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 1-232 |
| Cow position: | chr14:3127936-3127704 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 1-234 |
| Cow position: | chr14:680729-680963 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 112, 120 |
| Conread position: | 1-234 |
| Cow position: | chr14:680813-681047 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-234 |
| Cow position: | chr14:680897-681131 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 64 |
| Conread position: | 1-234 |
| Cow position: | chr14:3061403-3061169 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 135, 144 |
| Conread position: | 1-234 |
| Cow position: | chr14:3080088-3079854 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 1-238 |
| Cow position: | chr14:433980-434218 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-238 |
| Cow position: | chr14:3060983-3060745 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 126, 145 |
| Conread position: | 1-238 |
| Cow position: | chr14:3061655-3061417 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 1-239 |
| Cow position: | chr14:434064-434303 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 1-239 |
| Cow position: | chr14:3128020-3127781 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 222, 0 |
| Conread position: | 1-239 |
| Cow position: | chr14:3155495-3155734 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 133, 123 |
| Conread position: | 1-244 |
| Cow position: | chr14:433896-434140 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 1-244 |
| Cow position: | chr14:447759-448003 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 1-244 |
| Cow position: | chr14:3061487-3061243 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 1-244 |
| Cow position: | chr14:3080172-3079928 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-244 |
| Cow position: | chr14:3080256-3080012 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-244 |
| Cow position: | chr14:3080424-3080180 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-244 |
| Cow position: | chr14:3080592-3080348 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-244 |
| Cow position: | chr14:3080676-3080432 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-244 |
| Cow position: | chr14:3127516-3127272 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 138, 126 |
| Conread position: | 1-244 |
| Cow position: | chr14:3155579-3155823 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 126, 138 |
| Conread position: | 1-244 |
| Cow position: | chr14:3156236-3156480 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-244 |
| Cow position: | chr14:25895116-25895360 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 1-245 |
| Cow position: | chr14:3080760-3080515 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-257 |
| Cow position: | chr14:3127684-3127429 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 204, 216 |
| Conread position: | 1-259 |
| Cow position: | chr14:680561-680820 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-260 |
| Cow position: | chr14:438532-438771 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-260 |
| Cow position: | chr14:447675-447933 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 145, 136 |
| Conread position: | 1-260 |
| Cow position: | chr14:3079920-3079660 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-261 |
| Cow position: | chr14:680477-680738 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-261 |
| Cow position: | chr14:3061151-3060890 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 1-262 |
| Cow position: | chr14:3060899-3060637 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-278 |
| Cow position: | chr14:447591-447870 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 1-278 |
| Cow position: | chr14:447843-448122 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-278 |
| Cow position: | chr14:3061235-3060956 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 209, 0 |
| Conread position: | 1-278 |
| Cow position: | chr14:3080340-3080061 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-278 |
| Cow position: | chr14:3127600-3127321 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 123, 140 |
| Conread position: | 1-278 |
| Cow position: | chr14:3155411-3155690 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 135, 145 |
| Conread position: | 1-278 |
| Cow position: | chr14:3156152-3156431 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 205, 215 |
| Conread position: | 1-284 |
| Cow position: | chr14:434148-434431 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 257 |
| Conread position: | 1-293 |
| Cow position: | chr14:448011-448303 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 285 |
| Conread position: | 2-213 |
| Cow position: | chr14:663316-663104 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 63 |
| Conread position: | 3-244 |
| Cow position: | chr14:680647-680889 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 133, 139 |
| Conread position: | 3-278 |
| Cow position: | chr14:433814-434091 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 113, 118 |
| Conread position: | 16-244 |
| Cow position: | chr14:3156083-3156312 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 22-244 |
| Cow position: | chr14:3080823-3080600 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 62-278 |
| Cow position: | chr14:447568-447786 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 144, 185 |
Show alignments to all cow chromosomes.