Cow genome map

Conread name: Ss1.1-rpgl01_e1.5

Conread position: 1-171
Cow position: chr18:56329008-56328838 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-178
Cow position: chr18:49033211-49033034 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-179
Cow position: chr18:53635537-53635359 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-179
Cow position: chr18:56128628-56128806 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-180
Cow position: chr18:55497199-55497019 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 165, 0

Conread position: 1-197
Cow position: chr18:33064263-33064067 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-197
Cow position: chr18:56316136-56316332 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-197
Cow position: chr18:56316808-56317004 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-199
Cow position: chr18:55067023-55066825 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 135
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 126, 145

Conread position: 1-205
Cow position: chr18:52012272-52012068 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 134, 148

Conread position: 1-205
Cow position: chr18:53610212-53610008 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-205
Cow position: chr18:53635621-53635417 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-205
Cow position: chr18:56128544-56128748 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-205
Cow position: chr18:56316388-56316592 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 45, 31

Conread position: 1-205
Cow position: chr18:56329092-56328888 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-208
Cow position: chr18:53610296-53610089 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-208
Cow position: chr18:56128208-56128416 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 195, 0

Conread position: 1-216
Cow position: chr18:53610044-53609828 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 195, 0

Conread position: 1-223
Cow position: chr18:42724165-42723942 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 152
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 32, 37

Conread position: 1-226
Cow position: chr18:56128796-56129022 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 149
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 205, 0

Conread position: 1-232
Cow position: chr18:52012188-52011956 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 155
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 215, 0

Conread position: 1-233
Cow position: chr18:55497367-55497134 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 137, 148

Conread position: 1-233
Cow position: chr18:55497535-55497302 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 157
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 197, 0

Conread position: 1-233
Cow position: chr18:56329260-56329027 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 51, 44

Conread position: 1-234
Cow position: chr18:56267373-56267139 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 210, 0

Conread position: 1-238
Cow position: chr18:49033295-49033057 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 205, 0

Conread position: 1-238
Cow position: chr18:56330016-56329778 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 160
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 205, 0

Conread position: 1-238
Cow position: chr18:56391176-56390938 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 116, 141

Conread position: 1-238
Cow position: chr18:56391260-56391022 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 65, 59

Conread position: 1-239
Cow position: chr18:56391428-56391189 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 159
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 135, 141

Conread position: 1-244
Cow position: chr18:49032455-49032211 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 163
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 196, 0

Conread position: 1-244
Cow position: chr18:49033127-49032883 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 204, 0

Conread position: 1-244
Cow position: chr18:52012020-52011776 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 164
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 205, 0

Conread position: 1-244
Cow position: chr18:52012104-52011860 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 167
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 144, 126

Conread position: 1-244
Cow position: chr18:55497451-55497207 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 127, 134

Conread position: 1-244
Cow position: chr18:56128460-56128704 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 205, 0

Conread position: 1-244
Cow position: chr18:56316472-56316716 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 162
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 25, 18

Conread position: 1-244
Cow position: chr18:56316556-56316800 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 163
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 195, 0

Conread position: 1-244
Cow position: chr18:56329176-56328932 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 205, 0

Conread position: 1-244
Cow position: chr18:56329428-56329184 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 205, 0

Conread position: 1-244
Cow position: chr18:56329512-56329268 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 205, 0

Conread position: 1-244
Cow position: chr18:56329764-56329520 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 204, 0

Conread position: 1-244
Cow position: chr18:56391512-56391268 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 31

Conread position: 1-245
Cow position: chr18:53609960-53609715 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 160
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 213, 0

Conread position: 1-245
Cow position: chr18:56128880-56129125 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 156
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 213, 0

Conread position: 1-246
Cow position: chr18:42724501-42724255 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 202, 0

Conread position: 1-248
Cow position: chr18:56391899-56391651 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 172
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 57, 63

Conread position: 1-254
Cow position: chr18:56316640-56316894 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 111, 119

Conread position: 1-255
Cow position: chr18:56391092-56390837 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 32, 48

Conread position: 1-260
Cow position: chr18:56316724-56316984 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 205, 0

Conread position: 1-261
Cow position: chr18:49032959-49032698 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 173
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 137, 148

Conread position: 1-261
Cow position: chr18:56267457-56267196 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 205, 0

Conread position: 1-263
Cow position: chr18:53635285-53635023 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 174
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 213, 247

Conread position: 1-264
Cow position: chr18:53610380-53610116 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 205, 0

Conread position: 1-264
Cow position: chr18:53635453-53635189 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 168
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 205, 227

Conread position: 1-264
Cow position: chr18:53635705-53635441 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 205, 0

Conread position: 1-264
Cow position: chr18:56128712-56128976 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 168
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 205, 227

Conread position: 1-265
Cow position: chr18:56329344-56329079 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 189
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 129, 148

Conread position: 1-276
Cow position: chr18:33064515-33064238 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 176
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 126, 134

Conread position: 1-276
Cow position: chr18:56329680-56329403 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 185
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 146, 126

Conread position: 1-276
Cow position: chr18:56330184-56329907 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 180
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 148, 135

Conread position: 1-278
Cow position: chr18:56316304-56316583 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 179
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 186, 193

Conread position: 1-278
Cow position: chr18:56329596-56329317 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 188
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 136, 142

Conread position: 1-278
Cow position: chr18:56329848-56329569 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 188
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 49, 56

Conread position: 2-205
Cow position: chr18:42724584-42724381 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 135
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 2-244
Cow position: chr18:49033378-49033135 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 160
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 204, 222

Conread position: 2-244
Cow position: chr18:55497282-55497039 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 56, 61

Conread position: 3-205
Cow position: chr18:33093101-33092899 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 137
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 62, 49

Conread position: 3-205
Cow position: chr18:53636039-53635837 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 3-205
Cow position: chr18:56128126-56128328 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 141
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 49, 60

Conread position: 3-233
Cow position: chr18:53610462-53610231 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 156
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 193, 0

Conread position: 3-239
Cow position: chr18:55497617-55497380 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 221, 0

Conread position: 9-261
Cow position: chr18:55497695-55497442 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 169
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 51, 56

Conread position: 15-244
Cow position: chr18:56391969-56391739 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 152
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 43, 49

Show alignments to all cow chromosomes.