Cow genome map
| Conread name: | Ss1.1-rpgl01_e1.5 |
| Conread position: | 1-178 |
| Cow position: | chr25:3664015-3664192 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 1-178 |
| Cow position: | chr25:33157137-33156960 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-192 |
| Cow position: | chr25:36844536-36844345 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-197 |
| Cow position: | chr25:34763246-34763442 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-205 |
| Cow position: | chr25:25653112-25653316 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-205 |
| Cow position: | chr25:34769872-34769668 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-224 |
| Cow position: | chr25:34769788-34769566 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 1-232 |
| Cow position: | chr25:25653028-25653260 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 133, 125 |
| Conread position: | 1-232 |
| Cow position: | chr25:33127802-33128034 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-234 |
| Cow position: | chr25:25652356-25652590 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-234 |
| Cow position: | chr25:34473843-34474074 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 1-234 |
| Cow position: | chr25:34733925-34733691 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 1-238 |
| Cow position: | chr25:25652188-25652426 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 1-238 |
| Cow position: | chr25:25652272-25652510 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 1-238 |
| Cow position: | chr25:25652524-25652762 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 115, 120 |
| Conread position: | 1-238 |
| Cow position: | chr25:25652692-25652930 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 134, 140 |
| Conread position: | 1-238 |
| Cow position: | chr25:25652860-25653098 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 1-238 |
| Cow position: | chr25:25652944-25653182 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 1-238 |
| Cow position: | chr25:33530313-33530551 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 1-238 |
| Cow position: | chr25:33530397-33530635 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 63 |
| Conread position: | 1-238 |
| Cow position: | chr25:33530481-33530719 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 59, 63 |
| Conread position: | 1-244 |
| Cow position: | chr25:22236081-22236325 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 1-244 |
| Cow position: | chr25:24385164-24384920 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 1-244 |
| Cow position: | chr25:25652608-25652852 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 1-244 |
| Cow position: | chr25:33127886-33128130 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-244 |
| Cow position: | chr25:33157053-33156809 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-244 |
| Cow position: | chr25:33157221-33156977 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-244 |
| Cow position: | chr25:33157305-33157061 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-244 |
| Cow position: | chr25:33157389-33157145 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-245 |
| Cow position: | chr25:24384996-24384751 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 46 |
| Conread position: | 1-254 |
| Cow position: | chr25:4657297-4657043 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 1-261 |
| Cow position: | chr25:25652440-25652701 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 1-261 |
| Cow position: | chr25:25652776-25653037 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 125, 143 |
| Conread position: | 1-261 |
| Cow position: | chr25:33127970-33128231 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 1-276 |
| Cow position: | chr25:34447106-34447383 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 133, 124 |
| Conread position: | 2-238 |
| Cow position: | chr25:3663932-3664169 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 2-273 |
| Cow position: | chr25:3676161-3676432 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 114, 133 |
| Conread position: | 3-216 |
| Cow position: | chr25:4657463-4657249 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 114, 119 |
| Conread position: | 7-232 |
| Cow position: | chr25:34763168-34763394 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 48-261 |
| Cow position: | chr25:34733962-34733748 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 88 |
| Conread position: | 54-244 |
| Cow position: | chr25:33157420-33157229 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 152, 0 |
Show alignments to all cow chromosomes.