Cow genome map
| Conread name: | Ss1.1-rpgl10_f12.5 |
| Conread position: | 50-767 |
| Cow position: | chr17:22552719-22552003 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 215-618 |
| Cow position: | chr17:22551883-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-611 |
| Cow position: | chr17:22498832-22498459 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 68 |
| Conread position: | 229-767 |
| Cow position: | chr17:22552457-22551919 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 232-768 |
| Cow position: | chr17:22499249-22498713 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-761 |
| Cow position: | chr17:22499331-22498804 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 317 |
| Conread position: | 234-768 |
| Cow position: | chr17:22499079-22498546 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 531, 0 |
| Conread position: | 239-692 |
| Cow position: | chr17:22551943-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 281 |
| Conread position: | 239-767 |
| Cow position: | chr17:22452312-22451783 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 239-767 |
| Cow position: | chr17:22589865-22589337 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 488, 477 |
| Conread position: | 239-768 |
| Cow position: | chr17:22552195-22551666 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 488, 478 |
| Conread position: | 239-768 |
| Cow position: | chr17:22590033-22589504 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 251 |
| Conread position: | 240-629 |
| Cow position: | chr17:22589612-22589223 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 250 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 247, 225 |
| Conread position: | 245-713 |
| Cow position: | chr17:22589691-22589223 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 304 |
| Conread position: | 245-759 |
| Cow position: | chr17:22590195-22589681 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 413 |
| Conread position: | 251-766 |
| Cow position: | chr17:22473085-22473594 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 318 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 60, 53 |
| Conread position: | 251-768 |
| Cow position: | chr17:22590270-22589756 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 8 |
| Conread position: | 252-546 |
| Cow position: | chr17:22589516-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 152, 129 |
| Conread position: | 252-767 |
| Cow position: | chr17:22552098-22551583 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 252-767 |
| Cow position: | chr17:22552350-22551835 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 252-767 |
| Cow position: | chr17:22589768-22589253 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 399 |
| Conread position: | 252-768 |
| Cow position: | chr17:22552854-22552338 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 231 |
| Conread position: | 253-768 |
| Cow position: | chr17:22552012-22551498 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 18 |
| Conread position: | 253-768 |
| Cow position: | chr17:22552600-22552086 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 18 |
| Conread position: | 256-767 |
| Cow position: | chr17:22452378-22451868 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 15 |
| Conread position: | 257-691 |
| Cow position: | chr17:22498972-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 147 |
| Conread position: | 257-762 |
| Cow position: | chr17:22452210-22451705 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 231 |
| Conread position: | 257-763 |
| Cow position: | chr17:22552933-22552427 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 147 |
| Conread position: | 257-768 |
| Cow position: | chr17:22473337-22473848 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-768 |
| Cow position: | chr17:22473421-22473933 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 503, 0 |
| Conread position: | 257-768 |
| Cow position: | chr17:22499140-22498629 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-768 |
| Cow position: | chr17:22553101-22552590 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 258-768 |
| Cow position: | chr17:22589930-22589420 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 265-767 |
| Cow position: | chr17:22553177-22552675 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 387 |
| Conread position: | 269-511 |
| Cow position: | chr17:22589415-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 269-692 |
| Cow position: | chr17:22498876-22498462 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 0 |
| Conread position: | 269-768 |
| Cow position: | chr17:22473265-22473764 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 270-755 |
| Cow position: | chr17:22499379-22498894 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-768 |
| Cow position: | chr17:22552247-22551750 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 133 |
| Conread position: | 271-768 |
| Cow position: | chr17:22553003-22552506 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 296 |
| Conread position: | 277-722 |
| Cow position: | chr17:41440764-41440319 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 124, 120 |
| Conread position: | 277-763 |
| Cow position: | chr17:41441100-41440614 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 277-767 |
| Cow position: | chr17:22590079-22589589 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 277-768 |
| Cow position: | chr17:44467715-44468206 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 79 |
| Conread position: | 282-767 |
| Cow position: | chr17:22473033-22473511 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 304-763 |
| Cow position: | chr17:22473219-22473675 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 44 |
| Conread position: | 304-768 |
| Cow position: | chr17:22590304-22589840 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 428, 414 |
| Conread position: | 318-767 |
| Cow position: | chr17:22499418-22498966 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 319-713 |
| Cow position: | chr17:41440638-41440244 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-763 |
| Cow position: | chr17:22452400-22451956 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 133 |
| Conread position: | 323-719 |
| Cow position: | chr17:41440802-41440406 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 74, 78 |
| Conread position: | 343-719 |
| Cow position: | chr17:41441118-41440742 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 61, 54 |
| Conread position: | 393-766 |
| Cow position: | chr17:22499424-22499051 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 404-768 |
| Cow position: | chr17:22553122-22552758 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 227, 238 |
| Conread position: | 406-768 |
| Cow position: | chr17:22452396-22452035 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 486-768 |
| Cow position: | chr17:22452401-22452119 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 561-768 |
| Cow position: | chr17:22499424-22499217 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.