Cow genome map

Conread name: Ss1.1-rpgl10_f12.5

Conread position: 67-716
Cow position: chr19:14960409-14959764 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 102

Conread position: 75-763
Cow position: chr19:14940314-14941002 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 80

Conread position: 98-763
Cow position: chr19:23614033-23614698 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 44

Conread position: 215-767
Cow position: chr19:23614319-23614870 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 20

Conread position: 216-678
Cow position: chr19:14959277-14958823 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 15

Conread position: 217-768
Cow position: chr19:23596828-23597376 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 0

Conread position: 228-768
Cow position: chr19:23614247-23614787 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 80

Conread position: 229-768
Cow position: chr19:14959509-14958985 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 344
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 91, 72

Conread position: 229-768
Cow position: chr19:14960331-14959796 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 178

Conread position: 232-625
Cow position: chr19:23597344-23597736 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 40

Conread position: 233-548
Cow position: chr19:23614756-23615071 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 73, 66

Conread position: 233-671
Cow position: chr19:43570076-43569642 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 157

Conread position: 233-763
Cow position: chr19:14960411-14959883 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 39

Conread position: 233-766
Cow position: chr19:14916027-14916543 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 348
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 18, 27

Conread position: 233-768
Cow position: chr19:23613496-23614031 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 233-768
Cow position: chr19:23614084-23614619 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 234-768
Cow position: chr19:20677596-20678130 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 248

Conread position: 234-768
Cow position: chr19:23649871-23650405 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 237-767
Cow position: chr19:14940056-14940586 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 68

Conread position: 239-500
Cow position: chr19:14940814-14941075 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 46, 77

Conread position: 239-572
Cow position: chr19:14948313-14947979 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 222
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 248, 244

Conread position: 239-624
Cow position: chr19:14948397-14948011 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 280

Conread position: 239-768
Cow position: chr19:23613922-23614451 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 488, 478

Conread position: 239-768
Cow position: chr19:23649708-23650237 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 69

Conread position: 240-767
Cow position: chr19:23649289-23649816 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 240-768
Cow position: chr19:14940143-14940671 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 245-768
Cow position: chr19:43570552-43570045 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 334
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 134, 87

Conread position: 246-767
Cow position: chr19:14939981-14940502 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 250-768
Cow position: chr19:14915960-14916463 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 329
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 37, 9

Conread position: 250-768
Cow position: chr19:20678117-20678634 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 251-768
Cow position: chr19:23613431-23613947 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 252-716
Cow position: chr19:14940575-14941039 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 145

Conread position: 252-763
Cow position: chr19:23649469-23649980 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 374

Conread position: 252-767
Cow position: chr19:23613346-23613862 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 252-768
Cow position: chr19:23649553-23650069 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 50

Conread position: 252-768
Cow position: chr19:23649805-23650321 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 147

Conread position: 253-767
Cow position: chr19:23613852-23614366 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 59

Conread position: 253-768
Cow position: chr19:20677531-20678046 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 56

Conread position: 254-763
Cow position: chr19:23649387-23649896 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 255-768
Cow position: chr19:20635714-20635202 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 256-767
Cow position: chr19:23597031-23597543 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 256-767
Cow position: chr19:23614024-23614534 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 256-768
Cow position: chr19:23613267-23613779 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 466, 483

Conread position: 257-584
Cow position: chr19:14940748-14941075 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 225

Conread position: 257-681
Cow position: chr19:23650062-23650486 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 257-683
Cow position: chr19:23597285-23597711 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 399, 386

Conread position: 257-686
Cow position: chr19:20635377-20634951 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 277
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 126, 133

Conread position: 257-686
Cow position: chr19:20678375-20678801 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 278
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 230, 209

Conread position: 257-753
Cow position: chr19:23614612-23615108 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 39

Conread position: 257-763
Cow position: chr19:20635545-20635039 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 301

Conread position: 257-763
Cow position: chr19:20635629-20635123 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 15

Conread position: 257-767
Cow position: chr19:14940328-14940838 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 308

Conread position: 257-767
Cow position: chr19:14959565-14959070 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 213

Conread position: 257-767
Cow position: chr19:23613688-23614198 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 257-767
Cow position: chr19:23649642-23650152 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 306

Conread position: 257-768
Cow position: chr19:14959397-14958901 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 326
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 63, 57

Conread position: 257-768
Cow position: chr19:14959969-14959474 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 28

Conread position: 257-768
Cow position: chr19:20677955-20678466 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 53

Conread position: 257-768
Cow position: chr19:23613604-23614115 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 257-768
Cow position: chr19:43570220-43569711 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 301

Conread position: 258-768
Cow position: chr19:23614445-23614955 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 207

Conread position: 259-511
Cow position: chr19:23614866-23615118 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 219, 207

Conread position: 259-767
Cow position: chr19:23613774-23614282 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 259-768
Cow position: chr19:14959647-14959147 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 145

Conread position: 259-768
Cow position: chr19:23614530-23615039 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 122

Conread position: 259-768
Cow position: chr19:43570376-43569878 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 262-762
Cow position: chr19:20677709-20678208 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 9

Conread position: 267-762
Cow position: chr19:14959312-14958823 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 0

Conread position: 268-744
Cow position: chr19:14948451-14947978 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 47

Conread position: 269-761
Cow position: chr19:20678219-20678711 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 224

Conread position: 269-762
Cow position: chr19:23597213-23597706 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 183

Conread position: 269-767
Cow position: chr19:14940424-14940922 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 209

Conread position: 270-758
Cow position: chr19:23649991-23650479 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 271-669
Cow position: chr19:14940678-14941076 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 296

Conread position: 271-768
Cow position: chr19:20677465-20677962 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 133

Conread position: 276-682
Cow position: chr19:14959712-14959308 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 34

Conread position: 277-768
Cow position: chr19:23596972-23597460 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 277-768
Cow position: chr19:23597137-23597628 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 444, 449

Conread position: 280-767
Cow position: chr19:43570278-43569794 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 292-768
Cow position: chr19:14960436-14959962 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 0

Conread position: 322-765
Cow position: chr19:14939973-14940416 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 330-761
Cow position: chr19:20677440-20677871 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 274
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 388, 396

Conread position: 330-768
Cow position: chr19:14915955-14916390 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 284
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 50, 13

Conread position: 337-763
Cow position: chr19:14960475-14960051 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 131

Conread position: 364-761
Cow position: chr19:20677309-20677703 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 247
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 282, 50

Conread position: 367-767
Cow position: chr19:14948514-14948121 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 403-768
Cow position: chr19:23649284-23649649 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 235
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 83, 69

Conread position: 421-768
Cow position: chr19:14960475-14960130 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 0

Conread position: 434-763
Cow position: chr19:20677295-20677621 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 203
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 260, 56

Conread position: 487-768
Cow position: chr19:14948484-14948204 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 183
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 80, 0

Show alignments to all cow chromosomes.