Cow genome map
| Conread name: | Ss1.1-rpgl10_f12.5 |
| Conread position: | 229-524 |
| Cow position: | chr23:24546936-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 233-768 |
| Cow position: | chr23:25626260-25626792 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 265 |
| Conread position: | 234-713 |
| Cow position: | chr23:24535898-24535418 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 234-713 |
| Cow position: | chr23:25698677-25698198 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 234-747 |
| Cow position: | chr23:25698593-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 285 |
| Conread position: | 239-714 |
| Cow position: | chr23:25626014-25626489 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 249-768 |
| Cow position: | chr23:24522736-24522223 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 249-768 |
| Cow position: | chr23:24547336-24546817 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 36 |
| Conread position: | 252-768 |
| Cow position: | chr23:24639549-24640065 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 398 |
| Conread position: | 252-768 |
| Cow position: | chr23:25626195-25626708 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 319 |
| Conread position: | 253-632 |
| Cow position: | chr23:24654030-24654412 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 254-551 |
| Cow position: | chr23:24522485-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 138, 150 |
| Conread position: | 257-514 |
| Cow position: | chr23:25660489-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-516 |
| Cow position: | chr23:24560384-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-530 |
| Cow position: | chr23:24639806-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 147, 140 |
| Conread position: | 257-537 |
| Cow position: | chr23:24626478-24626756 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 0 |
| Conread position: | 257-607 |
| Cow position: | chr23:25724041-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 314, 308 |
| Conread position: | 257-633 |
| Cow position: | chr23:24522566-24522190 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 144 |
| Conread position: | 257-636 |
| Cow position: | chr23:25660321-25660700 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 51 |
| Conread position: | 257-669 |
| Cow position: | chr23:24547076-24546664 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-684 |
| Cow position: | chr23:25626617-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 209 |
| Conread position: | 257-763 |
| Cow position: | chr23:24535959-24535453 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 475, 483 |
| Conread position: | 257-767 |
| Cow position: | chr23:24547244-24546734 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-768 |
| Cow position: | chr23:24560804-24560293 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-763 |
| Cow position: | chr23:24639472-24639976 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-768 |
| Cow position: | chr23:25626370-25626876 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 456, 212 |
| Conread position: | 268-763 |
| Cow position: | chr23:24639229-24639724 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 160 |
| Conread position: | 268-767 |
| Cow position: | chr23:25660164-25660663 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 221 |
| Conread position: | 268-768 |
| Cow position: | chr23:24536032-24535532 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-768 |
| Cow position: | chr23:24560877-24560377 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 268-768 |
| Cow position: | chr23:25626127-25626624 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 459, 0 |
| Conread position: | 269-544 |
| Cow position: | chr23:24521964-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 193, 236 |
| Conread position: | 269-615 |
| Cow position: | chr23:24626406-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 0 |
| Conread position: | 269-757 |
| Cow position: | chr23:25660249-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 269-764 |
| Cow position: | chr23:24560540-24560043 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 455, 419 |
| Conread position: | 270-758 |
| Cow position: | chr23:25625961-25626449 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 271-684 |
| Cow position: | chr23:24626324-24626736 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 0 |
| Conread position: | 271-713 |
| Cow position: | chr23:24547146-24546704 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-745 |
| Cow position: | chr23:25626550-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 271-754 |
| Cow position: | chr23:25626466-25626946 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 271-761 |
| Cow position: | chr23:24560622-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-767 |
| Cow position: | chr23:24639316-24639812 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 73 |
| Conread position: | 271-768 |
| Cow position: | chr23:24560706-24560209 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-768 |
| Cow position: | chr23:24639400-24639897 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 275-685 |
| Cow position: | chr23:25724107-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 280-768 |
| Cow position: | chr23:24626177-24626653 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 309-767 |
| Cow position: | chr23:25698686-25698228 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 77 |
| Conread position: | 319-768 |
| Cow position: | chr23:24560910-24560461 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 334-752 |
| Cow position: | chr23:24626303-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 300 |
| Conread position: | 334-768 |
| Cow position: | chr23:25660146-25660580 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 117 |
| Conread position: | 337-767 |
| Cow position: | chr23:25625946-25626374 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 345-628 |
| Cow position: | chr23:24521972-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 201, 252 |
| Conread position: | 348-761 |
| Cow position: | chr23:24654042-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 375 |
| Conread position: | 353-747 |
| Cow position: | chr23:24522119-24521737 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 330, 149 |
| Conread position: | 360-752 |
| Cow position: | chr23:25724106-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 108 |
| Conread position: | 364-768 |
| Cow position: | chr23:24536104-24535700 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-752 |
| Cow position: | chr23:25698697-25698327 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 81, 88 |
| Conread position: | 424-766 |
| Cow position: | chr23:24522814-24522477 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 244, 29 |
| Conread position: | 432-766 |
| Cow position: | chr23:24654042-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 439-767 |
| Cow position: | chr23:24639232-24639560 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 149, 159 |
| Conread position: | 445-763 |
| Cow position: | chr23:25724105-25723787 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 517-768 |
| Cow position: | chr23:24654043-24654294 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 529-768 |
| Cow position: | chr23:25724105-25723866 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 22, 12 |
Show alignments to all cow chromosomes.