Cow genome map
| Conread name: | Ss1.1-rpgl10_f12.5 |
| Conread position: | 180-684 |
| Cow position: | chr28:7758332-7758835 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 438, 448 |
| Conread position: | 201-528 |
| Cow position: | chr28:7810618-7810947 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 8, 191 |
| Conread position: | 201-768 |
| Cow position: | chr28:7810377-7810935 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 212-768 |
| Cow position: | chr28:7810304-7810851 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 60 |
| Conread position: | 223-629 |
| Cow position: | chr28:34679509-34679111 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 262 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 177, 121 |
| Conread position: | 232-766 |
| Cow position: | chr28:9299043-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 233-629 |
| Cow position: | chr28:9299282-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 246, 240 |
| Conread position: | 233-670 |
| Cow position: | chr28:7757897-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-752 |
| Cow position: | chr28:7757814-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-768 |
| Cow position: | chr28:9252585-9253111 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 359, 160 |
| Conread position: | 239-768 |
| Cow position: | chr28:7757399-7757928 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 242-768 |
| Cow position: | chr28:34695982-34696508 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 76, 72 |
| Conread position: | 247-754 |
| Cow position: | chr28:34679569-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 198, 181 |
| Conread position: | 251-768 |
| Cow position: | chr28:9289996-9290510 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 212 |
| Conread position: | 252-551 |
| Cow position: | chr28:9253351-9253651 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 266, 0 |
| Conread position: | 252-664 |
| Cow position: | chr28:34673519-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 252-719 |
| Cow position: | chr28:9290168-9290629 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 41 |
| Conread position: | 252-755 |
| Cow position: | chr28:9253099-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 252-767 |
| Cow position: | chr28:7757496-7758011 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 479 |
| Conread position: | 253-617 |
| Cow position: | chr28:9290333-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 253-684 |
| Cow position: | chr28:9253185-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 253-768 |
| Cow position: | chr28:9253017-9253531 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 253-768 |
| Cow position: | chr28:9298899-9299397 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 15 |
| Conread position: | 257-479 |
| Cow position: | chr28:33210397-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 28, 43 |
| Conread position: | 257-479 |
| Cow position: | chr28:34696333-34696555 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 146, 140 |
| Conread position: | 257-481 |
| Cow position: | chr28:9290503-9290729 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 217, 0 |
| Conread position: | 257-629 |
| Cow position: | chr28:9253272-9253645 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 0 |
| Conread position: | 257-717 |
| Cow position: | chr28:11333632-11333171 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 146, 140 |
| Conread position: | 257-719 |
| Cow position: | chr28:34695829-34696291 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 157, 140 |
| Conread position: | 257-719 |
| Cow position: | chr28:34696081-34696543 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 140 |
| Conread position: | 257-748 |
| Cow position: | chr28:34673440-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 257-768 |
| Cow position: | chr28:7757585-7758096 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 384 |
| Conread position: | 257-768 |
| Cow position: | chr28:7757669-7758180 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-768 |
| Cow position: | chr28:7758173-7758668 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 297 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 257-768 |
| Cow position: | chr28:9298818-9299313 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 257-768 |
| Cow position: | chr28:11334136-11333625 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 258-768 |
| Cow position: | chr28:7757334-7757844 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-632 |
| Cow position: | chr28:33210231-33210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 193 |
| Conread position: | 268-573 |
| Cow position: | chr28:33210324-33210630 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 247, 0 |
| Conread position: | 268-608 |
| Cow position: | chr28:34696260-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 135, 129 |
| Conread position: | 268-763 |
| Cow position: | chr28:7758336-7758830 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 460, 442 |
| Conread position: | 268-767 |
| Cow position: | chr28:9298996-9299480 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 315 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 268-767 |
| Cow position: | chr28:11333705-11333206 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 219, 212 |
| Conread position: | 269-556 |
| Cow position: | chr28:9290432-9290718 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 269-610 |
| Cow position: | chr28:7810604-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 269-768 |
| Cow position: | chr28:7757765-7758264 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-766 |
| Cow position: | chr28:9298666-9299157 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 10 |
| Conread position: | 274-768 |
| Cow position: | chr28:9252953-9253447 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 275-692 |
| Cow position: | chr28:7810526-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 197 |
| Conread position: | 275-768 |
| Cow position: | chr28:7757189-7757676 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 275-768 |
| Cow position: | chr28:7810283-7810767 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 456, 246 |
| Conread position: | 276-768 |
| Cow position: | chr28:11334201-11333709 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 121, 129 |
| Conread position: | 291-768 |
| Cow position: | chr28:9290123-9290594 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 94 |
| Conread position: | 304-768 |
| Cow position: | chr28:9252898-9253363 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 310-742 |
| Cow position: | chr28:34679588-34679154 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 94, 45 |
| Conread position: | 319-621 |
| Cow position: | chr28:7809811-7810107 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 319-767 |
| Cow position: | chr28:7810252-7810682 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 319-768 |
| Cow position: | chr28:9252748-9253195 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 158 |
| Conread position: | 336-719 |
| Cow position: | chr28:33210223-33210608 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 251 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 339-767 |
| Cow position: | chr28:7758323-7758751 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-768 |
| Cow position: | chr28:34679600-34679213 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 90, 54 |
| Conread position: | 418-761 |
| Cow position: | chr28:9298561-9298902 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 40, 104 |
| Conread position: | 424-765 |
| Cow position: | chr28:33210228-33210568 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 504-768 |
| Cow position: | chr28:33210223-33210488 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 5, 66 |
| Conread position: | 517-768 |
| Cow position: | chr28:34673364-34673615 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.