Cow genome map
| Conread name: | Ss1.1-rpgl10_f12.5 |
| Conread position: | 70-681 |
| Cow position: | chr3:62722174-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 100-767 |
| Cow position: | chr3:62742041-62742702 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 170-768 |
| Cow position: | chr3:68045515-68046113 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 102 |
| Conread position: | 204-664 |
| Cow position: | chr3:77350881-77350433 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 179 |
| Conread position: | 228-768 |
| Cow position: | chr3:62722353-62721814 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 537, 0 |
| Conread position: | 229-761 |
| Cow position: | chr3:77351100-77350578 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 336 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 229-768 |
| Cow position: | chr3:77351267-77350736 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 40, 87 |
| Conread position: | 233-763 |
| Cow position: | chr3:62742923-62743431 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 85 |
| Conread position: | 239-551 |
| Cow position: | chr3:62743159-62743471 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 240-768 |
| Cow position: | chr3:62722257-62721729 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 246-765 |
| Cow position: | chr3:68026998-68027517 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 248-641 |
| Cow position: | chr3:68027336-68027729 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 310 |
| Conread position: | 248-763 |
| Cow position: | chr3:62742354-62742864 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 0 |
| Conread position: | 253-762 |
| Cow position: | chr3:62722075-62721567 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 257-545 |
| Cow position: | chr3:16020455-16020178 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 147, 52 |
| Conread position: | 257-761 |
| Cow position: | chr3:68045854-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 55 |
| Conread position: | 257-763 |
| Cow position: | chr3:62722156-62721650 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-763 |
| Cow position: | chr3:68045686-68046192 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 215 |
| Conread position: | 257-766 |
| Cow position: | chr3:62742862-62743350 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 257-767 |
| Cow position: | chr3:68027093-68027603 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-767 |
| Cow position: | chr3:68027261-68027769 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 485, 0 |
| Conread position: | 257-767 |
| Cow position: | chr3:68045770-68046280 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-768 |
| Cow position: | chr3:62742696-62743184 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 50 |
| Conread position: | 257-768 |
| Cow position: | chr3:68027177-68027688 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-767 |
| Cow position: | chr3:62742792-62743267 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 214 |
| Conread position: | 274-668 |
| Cow position: | chr3:62743110-62743504 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 200, 191 |
| Conread position: | 276-719 |
| Cow position: | chr3:62743033-62743471 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 318-682 |
| Cow position: | chr3:77350934-77350575 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 232, 0 |
| Conread position: | 319-713 |
| Cow position: | chr3:20194869-20195263 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 321-768 |
| Cow position: | chr3:68026990-68027436 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 11 |
| Conread position: | 362-767 |
| Cow position: | chr3:62722387-62721982 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 53 |
| Conread position: | 496-762 |
| Cow position: | chr3:16020468-16020209 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 143, 53 |
Show alignments to all cow chromosomes.