Cow genome map
| Conread name: | Ss1.1-rpgl10_f12.5 |
| Conread position: | 229-763 |
| Cow position: | chr6:49395766-49396296 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 55, 254 |
| Conread position: | 232-768 |
| Cow position: | chr6:49340382-49340916 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 13 |
| Conread position: | 233-465 |
| Cow position: | chr6:49341221-49341452 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 219, 0 |
| Conread position: | 234-768 |
| Cow position: | chr6:49340466-49341000 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 218 |
| Conread position: | 239-768 |
| Cow position: | chr6:49396360-49396889 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 243-763 |
| Cow position: | chr6:49396034-49396548 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 194 |
| Conread position: | 249-768 |
| Cow position: | chr6:49340820-49341336 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 253-623 |
| Cow position: | chr6:49341074-49341443 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 253-768 |
| Cow position: | chr6:49340906-49341420 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 257-680 |
| Cow position: | chr6:49429069-49429492 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 224, 230 |
| Conread position: | 257-692 |
| Cow position: | chr6:49340993-49341428 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-763 |
| Cow position: | chr6:49428985-49429491 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 398, 387 |
| Conread position: | 257-767 |
| Cow position: | chr6:49396294-49396804 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 140 |
| Conread position: | 257-768 |
| Cow position: | chr6:49340573-49341084 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 257-768 |
| Cow position: | chr6:49340657-49341168 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 268-535 |
| Cow position: | chr6:49396725-49396992 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 219, 214 |
| Conread position: | 268-681 |
| Cow position: | chr6:49396557-49396970 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 387, 382 |
| Conread position: | 269-768 |
| Cow position: | chr6:49340753-49341252 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-761 |
| Cow position: | chr6:49396476-49396966 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 301 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 277-768 |
| Cow position: | chr6:49428837-49429328 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 297 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 280-768 |
| Cow position: | chr6:49396233-49396721 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 297-768 |
| Cow position: | chr6:49340361-49340832 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 223 |
| Conread position: | 317-763 |
| Cow position: | chr6:49362400-49362834 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 80 |
| Conread position: | 318-768 |
| Cow position: | chr6:49428710-49429160 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 65, 76 |
| Conread position: | 319-763 |
| Cow position: | chr6:49428627-49429071 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 319-768 |
| Cow position: | chr6:49428795-49429244 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 141, 132 |
| Conread position: | 319-768 |
| Cow position: | chr6:49428963-49429412 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 330, 336 |
| Conread position: | 415-713 |
| Cow position: | chr6:49362330-49362628 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 97, 89 |
Show alignments to all cow chromosomes.