Cow genome map
| Conread name: | Ss1.1-rpgl10_f12.5 |
| Conread position: | 64-763 |
| Cow position: | chr7:1014081-1014774 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 121 |
| Conread position: | 72-767 |
| Cow position: | chr7:42879123-42878429 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 10 |
| Conread position: | 148-561 |
| Cow position: | chr7:1438309-1438722 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 75, 88 |
| Conread position: | 170-768 |
| Cow position: | chr7:1014025-1014617 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 229-531 |
| Cow position: | chr7:3180678-3180972 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 150, 118 |
| Conread position: | 229-754 |
| Cow position: | chr7:42878799-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 161 |
| Conread position: | 229-768 |
| Cow position: | chr7:42878883-42878344 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 154 |
| Conread position: | 231-768 |
| Cow position: | chr7:8277739-8278276 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 232-633 |
| Cow position: | chr7:8243698-8244096 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 328, 295 |
| Conread position: | 232-761 |
| Cow position: | chr7:1014333-1014856 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 231 |
| Conread position: | 232-767 |
| Cow position: | chr7:3179757-3180292 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-767 |
| Cow position: | chr7:8243446-8243981 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 340 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 66, 92 |
| Conread position: | 234-763 |
| Cow position: | chr7:1439448-1439977 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 137 |
| Conread position: | 234-767 |
| Cow position: | chr7:1439703-1440233 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 234-767 |
| Cow position: | chr7:3179927-3180460 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 231 |
| Conread position: | 234-768 |
| Cow position: | chr7:1439615-1440150 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 37 |
| Conread position: | 236-767 |
| Cow position: | chr7:1014667-1015198 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 327 |
| Conread position: | 239-513 |
| Cow position: | chr7:3180604-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 233, 192 |
| Conread position: | 239-768 |
| Cow position: | chr7:1014754-1015283 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 240 |
| Conread position: | 239-768 |
| Cow position: | chr7:11601204-11600675 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 322 |
| Conread position: | 240-768 |
| Cow position: | chr7:3179849-3180377 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 230 |
| Conread position: | 245-464 |
| Cow position: | chr7:42878447-42878227 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 181, 198 |
| Conread position: | 245-586 |
| Cow position: | chr7:11600778-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 247-768 |
| Cow position: | chr7:18389985-18390506 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 249-757 |
| Cow position: | chr7:18390326-18390831 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 12 |
| Conread position: | 250-768 |
| Cow position: | chr7:8243381-8243898 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 326 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 70, 21 |
| Conread position: | 252-547 |
| Cow position: | chr7:8325821-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 152, 139 |
| Conread position: | 252-551 |
| Cow position: | chr7:1015187-1015488 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 140, 152 |
| Conread position: | 252-616 |
| Cow position: | chr7:1438329-1438693 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 252-630 |
| Cow position: | chr7:1439887-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 84 |
| Conread position: | 252-767 |
| Cow position: | chr7:8243215-8243729 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 130 |
| Conread position: | 252-768 |
| Cow position: | chr7:18390242-18390758 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 253-754 |
| Cow position: | chr7:11600937-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 253-767 |
| Cow position: | chr7:11434818-11434312 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 323 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 152, 15 |
| Conread position: | 253-768 |
| Cow position: | chr7:8277593-8278108 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 328 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 253-768 |
| Cow position: | chr7:8325067-8325581 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 18 |
| Conread position: | 253-768 |
| Cow position: | chr7:11601105-11600591 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 255-767 |
| Cow position: | chr7:8324732-8325244 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 50 |
| Conread position: | 255-767 |
| Cow position: | chr7:42879192-42878681 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 256-767 |
| Cow position: | chr7:42879445-42878933 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 257-558 |
| Cow position: | chr7:1439975-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 138, 147 |
| Conread position: | 257-681 |
| Cow position: | chr7:42878687-42878263 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-692 |
| Cow position: | chr7:8277933-8278368 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 257-713 |
| Cow position: | chr7:8325658-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 298 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 257-716 |
| Cow position: | chr7:8278269-8278719 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 257-721 |
| Cow position: | chr7:11434731-11434274 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 297 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 257-763 |
| Cow position: | chr7:18390163-18390669 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-766 |
| Cow position: | chr7:1014442-1014945 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 257-766 |
| Cow position: | chr7:3180286-3180795 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 241 |
| Conread position: | 257-766 |
| Cow position: | chr7:8325574-8326083 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 257-767 |
| Cow position: | chr7:3180118-3180628 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-767 |
| Cow position: | chr7:8242968-8243477 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 139, 148 |
| Conread position: | 257-767 |
| Cow position: | chr7:8277345-8277855 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 147, 134 |
| Conread position: | 257-767 |
| Cow position: | chr7:8325490-8326000 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 324 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 147, 132 |
| Conread position: | 257-768 |
| Cow position: | chr7:1014940-1015450 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 507, 0 |
| Conread position: | 257-768 |
| Cow position: | chr7:3180202-3180713 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 294 |
| Conread position: | 257-768 |
| Cow position: | chr7:8325406-8325917 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 136 |
| Conread position: | 257-768 |
| Cow position: | chr7:11601018-11600507 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 257-768 |
| Cow position: | chr7:42879107-42878596 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 470 |
| Conread position: | 258-767 |
| Cow position: | chr7:8278186-8278687 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 320 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 62, 52 |
| Conread position: | 259-763 |
| Cow position: | chr7:3180372-3180875 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 456, 432 |
| Conread position: | 259-768 |
| Cow position: | chr7:1014858-1015367 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 131 |
| Conread position: | 261-768 |
| Cow position: | chr7:8243140-8243646 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 143, 130 |
| Conread position: | 266-768 |
| Cow position: | chr7:42879351-42878848 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 268-767 |
| Cow position: | chr7:3179709-3180208 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 458 |
| Conread position: | 268-767 |
| Cow position: | chr7:3180045-3180544 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 359 |
| Conread position: | 269-714 |
| Cow position: | chr7:1438096-1438539 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 176, 93 |
| Conread position: | 269-720 |
| Cow position: | chr7:1439821-1440270 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 41 |
| Conread position: | 269-768 |
| Cow position: | chr7:8278029-8278526 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 270-768 |
| Cow position: | chr7:8242813-8243311 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 300 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 271-768 |
| Cow position: | chr7:42879261-42878764 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 273-720 |
| Cow position: | chr7:1438266-1438713 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 275 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 277, 285 |
| Conread position: | 288-768 |
| Cow position: | chr7:18389943-18390422 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 306 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 311-768 |
| Cow position: | chr7:18390133-18390589 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 77 |
| Conread position: | 321-768 |
| Cow position: | chr7:1014668-1015115 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 199 |
| Conread position: | 325-763 |
| Cow position: | chr7:11601285-11600848 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 54 |
| Conread position: | 336-768 |
| Cow position: | chr7:8277256-8277688 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 44 |
| Conread position: | 403-701 |
| Cow position: | chr7:11434508-11434209 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 421-768 |
| Cow position: | chr7:8324730-8325077 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 72, 50 |
| Conread position: | 439-768 |
| Cow position: | chr7:3179712-3180041 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 482-768 |
| Cow position: | chr7:11601213-11600927 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 69, 79 |
| Conread position: | 516-768 |
| Cow position: | chr7:3179705-3179957 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.