Cow genome map
| Conread name: | Ss1.1-rpgl10_f12.5 |
| Conread position: | 67-767 |
| Cow position: | chrX:25325776-25325076 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 88 |
| Conread position: | 216-768 |
| Cow position: | chrX:25325291-25324739 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 417 |
| Conread position: | 229-526 |
| Cow position: | chrX:29044951-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 250, 243 |
| Conread position: | 229-763 |
| Cow position: | chrX:25325530-25324996 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 236 |
| Conread position: | 229-766 |
| Cow position: | chrX:25324942-25324405 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-767 |
| Cow position: | chrX:29045287-29044749 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-631 |
| Cow position: | chrX:29045851-29045452 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 233-608 |
| Cow position: | chrX:25310203-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-763 |
| Cow position: | chrX:25324853-25324324 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-763 |
| Cow position: | chrX:25325189-25324660 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-766 |
| Cow position: | chrX:25324769-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 74 |
| Conread position: | 234-766 |
| Cow position: | chrX:25325357-25324825 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 234-768 |
| Cow position: | chrX:25325021-25324487 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-768 |
| Cow position: | chrX:25325441-25324907 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 147 |
| Conread position: | 239-766 |
| Cow position: | chrX:25325856-25325329 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 239-767 |
| Cow position: | chrX:25309873-25310401 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 395 |
| Conread position: | 239-768 |
| Cow position: | chrX:29045193-29044664 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 241-768 |
| Cow position: | chrX:25325770-25325243 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 245-768 |
| Cow position: | chrX:25325094-25324571 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 145 |
| Conread position: | 252-610 |
| Cow position: | chrX:29045012-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 252-686 |
| Cow position: | chrX:29045096-29044662 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 220 |
| Conread position: | 252-768 |
| Cow position: | chrX:25309970-25310486 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 226 |
| Conread position: | 255-768 |
| Cow position: | chrX:25309723-25310234 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 257-695 |
| Cow position: | chrX:25310143-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 257-766 |
| Cow position: | chrX:25310059-25310568 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 257-767 |
| Cow position: | chrX:13826779-13826269 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 317 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 257-768 |
| Cow position: | chrX:25309807-25310318 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 258-714 |
| Cow position: | chrX:12627608-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 140, 41 |
| Conread position: | 258-716 |
| Cow position: | chrX:12627441-12627897 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 50 |
| Conread position: | 261-768 |
| Cow position: | chrX:12627527-12628033 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 316 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 143, 120 |
| Conread position: | 267-759 |
| Cow position: | chrX:29045897-29045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 271-713 |
| Cow position: | chrX:13826681-13826239 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 271-767 |
| Cow position: | chrX:29045329-29044833 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 119 |
| Conread position: | 278-767 |
| Cow position: | chrX:25325899-25325412 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 278-768 |
| Cow position: | chrX:25309660-25310150 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 319-704 |
| Cow position: | chrX:14181327-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-766 |
| Cow position: | chrX:14181411-14180964 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 319-767 |
| Cow position: | chrX:12627334-12627780 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 92 |
| Conread position: | 320-768 |
| Cow position: | chrX:29045361-29044916 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 29 |
| Conread position: | 357-768 |
| Cow position: | chrX:25309655-25310066 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-768 |
| Cow position: | chrX:25325857-25325495 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 421-767 |
| Cow position: | chrX:29045830-29045484 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 477-761 |
| Cow position: | chrX:29045858-29045574 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 86, 79 |
Show alignments to all cow chromosomes.