Cow genome map
| Conread name: | Ss1.1-rpgl13_o20.5 |
| Conread position: | 1-278 |
| Cow position: | chr17:22473354-22473633 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 30, 190 |
| Conread position: | 3-266 |
| Cow position: | chr17:22452277-22452011 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 9, 262 |
| Conread position: | 6-177 |
| Cow position: | chr17:22473779-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 6-264 |
| Cow position: | chr17:22499286-22499026 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-265 |
| Cow position: | chr17:22499370-22499110 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 23, 257 |
| Conread position: | 6-270 |
| Cow position: | chr17:22552659-22552393 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-270 |
| Cow position: | chr17:22589909-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 6-270 |
| Cow position: | chr17:22590161-22589895 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 6-271 |
| Cow position: | chr17:22551819-22551552 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 157 |
| Conread position: | 6-272 |
| Cow position: | chr17:22452188-22451920 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 6-272 |
| Cow position: | chr17:22552491-22552223 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 121 |
| Conread position: | 6-273 |
| Cow position: | chr17:22589993-22589724 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 6-277 |
| Cow position: | chr17:22552743-22552469 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 6-278 |
| Cow position: | chr17:22452104-22451830 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 6-282 |
| Cow position: | chr17:22552071-22551792 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 6-285 |
| Cow position: | chr17:22589825-22589543 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-285 |
| Cow position: | chr17:22590077-22589795 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 121 |
| Conread position: | 6-307 |
| Cow position: | chr17:22552239-22551933 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 6-307 |
| Cow position: | chr17:22552995-22552689 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 293 |
| Conread position: | 6-328 |
| Cow position: | chr17:22499118-22498791 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 6-362 |
| Cow position: | chr17:22498866-22498505 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 24, 295 |
| Conread position: | 7-230 |
| Cow position: | chr17:22473696-22473920 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 7-249 |
| Cow position: | chr17:22452019-22451775 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 7-261 |
| Cow position: | chr17:22551734-22551477 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 7-264 |
| Cow position: | chr17:22473444-22473703 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 25, 112 |
| Conread position: | 7-266 |
| Cow position: | chr17:22589656-22589396 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 7-270 |
| Cow position: | chr17:22498949-22498684 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 7-271 |
| Cow position: | chr17:22589488-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 21, 99 |
| Conread position: | 7-272 |
| Cow position: | chr17:22473528-22473795 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 19, 113 |
| Conread position: | 7-272 |
| Cow position: | chr17:22552574-22552307 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 198 |
| Conread position: | 7-282 |
| Cow position: | chr17:22552322-22552044 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-282 |
| Cow position: | chr17:22552406-22552128 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 37 |
| Conread position: | 7-282 |
| Cow position: | chr17:22552910-22552632 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 7-285 |
| Cow position: | chr17:22551986-22551705 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-299 |
| Cow position: | chr17:22552154-22551859 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 21, 291 |
| Conread position: | 7-307 |
| Cow position: | chr17:22552826-22552521 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 21, 291 |
| Conread position: | 7-328 |
| Cow position: | chr17:22589740-22589414 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 13-271 |
| Cow position: | chr17:22551896-22551636 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 30-265 |
| Cow position: | chr17:22590304-22590068 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 35-266 |
| Cow position: | chr17:22473305-22473536 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 197, 221 |
| Conread position: | 44-272 |
| Cow position: | chr17:22499415-22499186 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 50-265 |
| Cow position: | chr17:22499157-22498942 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 149, 142 |
| Conread position: | 51-229 |
| Cow position: | chr17:22553117-22552939 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 57-328 |
| Cow position: | chr17:22452388-22452113 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 175, 0 |
Show alignments to all cow chromosomes.