Cow genome map
| Conread name: | Ss1.1-rpgl13_o20.5 |
| Conread position: | 1-230 |
| Cow position: | chr19:14959059-14958829 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-270 |
| Cow position: | chr19:20678392-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 30, 105 |
| Conread position: | 1-272 |
| Cow position: | chr19:20678140-20678413 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-272 |
| Cow position: | chr19:23650163-23650436 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 37 |
| Conread position: | 1-282 |
| Cow position: | chr19:14940009-14940293 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 105 |
| Conread position: | 1-328 |
| Cow position: | chr19:14940093-14940425 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 2-272 |
| Cow position: | chr19:43570283-43570014 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 4-272 |
| Cow position: | chr19:23649998-23650268 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 24, 118 |
| Conread position: | 6-188 |
| Cow position: | chr19:20678481-20678664 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 104 |
| Conread position: | 6-227 |
| Cow position: | chr19:23614886-23615108 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 117 |
| Conread position: | 6-230 |
| Cow position: | chr19:14940602-14940827 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-249 |
| Cow position: | chr19:23614130-23614375 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 101 |
| Conread position: | 6-249 |
| Cow position: | chr19:43569946-43569703 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 191 |
| Conread position: | 6-265 |
| Cow position: | chr19:23649916-23650177 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 6-270 |
| Cow position: | chr19:23613374-23613640 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-271 |
| Cow position: | chr19:23649664-23649931 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 112 |
| Conread position: | 6-272 |
| Cow position: | chr19:14948440-14948173 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 6-272 |
| Cow position: | chr19:14960031-14959765 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 23, 113 |
| Conread position: | 6-272 |
| Cow position: | chr19:14960197-14959931 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 6-272 |
| Cow position: | chr19:20677641-20677909 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 6-272 |
| Cow position: | chr19:20677977-20678245 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 6-272 |
| Cow position: | chr19:20678061-20678329 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 6-272 |
| Cow position: | chr19:23614298-23614566 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 6-272 |
| Cow position: | chr19:23649748-23650016 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 6-272 |
| Cow position: | chr19:43570198-43569930 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 189 |
| Conread position: | 6-274 |
| Cow position: | chr19:14960365-14960097 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 21, 211 |
| Conread position: | 6-275 |
| Cow position: | chr19:20635439-20635168 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 26, 192 |
| Conread position: | 6-281 |
| Cow position: | chr19:14940266-14940544 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-281 |
| Cow position: | chr19:23613710-23613988 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 197 |
| Conread position: | 6-285 |
| Cow position: | chr19:20678229-20678511 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 25, 101 |
| Conread position: | 6-293 |
| Cow position: | chr19:23614550-23614840 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 25, 103 |
| Conread position: | 6-299 |
| Cow position: | chr19:23614214-23614510 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 6-301 |
| Cow position: | chr19:23597391-23597689 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 22, 292 |
| Conread position: | 6-306 |
| Cow position: | chr19:14940686-14940991 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 291 |
| Conread position: | 6-307 |
| Cow position: | chr19:14940350-14940656 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-307 |
| Cow position: | chr19:23613962-23614268 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 22, 291 |
| Conread position: | 6-307 |
| Cow position: | chr19:23614046-23614352 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-369 |
| Cow position: | chr19:23613458-23613835 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 7-227 |
| Cow position: | chr19:14948272-14948051 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 18, 155 |
| Conread position: | 7-230 |
| Cow position: | chr19:14960114-14959890 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 7-249 |
| Cow position: | chr19:20635270-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 7-249 |
| Cow position: | chr19:23650085-23650329 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 115 |
| Conread position: | 7-255 |
| Cow position: | chr19:23597476-23597727 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 187 |
| Conread position: | 7-270 |
| Cow position: | chr19:14940519-14940784 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 21, 111 |
| Conread position: | 7-270 |
| Cow position: | chr19:23613879-23614144 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 7-271 |
| Cow position: | chr19:20677810-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 19, 195 |
| Conread position: | 7-272 |
| Cow position: | chr19:14940771-14941038 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-272 |
| Cow position: | chr19:14959626-14959359 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 7-272 |
| Cow position: | chr19:20635522-20635255 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-272 |
| Cow position: | chr19:23597140-23597407 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 7-272 |
| Cow position: | chr19:23597224-23597491 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 7-272 |
| Cow position: | chr19:23597308-23597575 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 7-272 |
| Cow position: | chr19:23649413-23649680 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 115 |
| Conread position: | 7-272 |
| Cow position: | chr19:23649497-23649764 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 33, 118 |
| Conread position: | 7-272 |
| Cow position: | chr19:23649581-23649848 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 7-273 |
| Cow position: | chr19:20677726-20677994 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-282 |
| Cow position: | chr19:14940435-14940713 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 120 |
| Conread position: | 7-285 |
| Cow position: | chr19:14959215-14958940 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 96 |
| Conread position: | 7-286 |
| Cow position: | chr19:23614719-23615001 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 7-301 |
| Cow position: | chr19:23614803-23615100 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 7-302 |
| Cow position: | chr19:23614467-23614765 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 19, 174 |
| Conread position: | 7-318 |
| Cow position: | chr19:23613795-23614111 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-338 |
| Cow position: | chr19:43570113-43569777 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 11-272 |
| Cow position: | chr19:23649837-23650100 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 35-282 |
| Cow position: | chr19:23614412-23614661 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 36-275 |
| Cow position: | chr19:23613657-23613897 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 36-293 |
| Cow position: | chr19:14916020-14916277 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 109 |
| Conread position: | 39-273 |
| Cow position: | chr19:14960415-14960180 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 49-272 |
| Cow position: | chr19:20635647-20635423 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 63-282 |
| Cow position: | chr19:14939988-14940209 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 66-271 |
| Cow position: | chr19:14959649-14959444 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 166, 16 |
| Conread position: | 66-272 |
| Cow position: | chr19:23613351-23613558 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 166, 0 |
Show alignments to all cow chromosomes.