Cow genome map
| Conread name: | Ss1.1-rpgl13_o20.5 |
| Conread position: | 1-226 |
| Cow position: | chr23:24626495-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-270 |
| Cow position: | chr23:25626133-25626404 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-272 |
| Cow position: | chr23:24522465-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 5-270 |
| Cow position: | chr23:24639323-24639590 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 5-272 |
| Cow position: | chr23:24560783-24560514 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 6-230 |
| Cow position: | chr23:24536021-24535796 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 119 |
| Conread position: | 6-248 |
| Cow position: | chr23:25723935-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-269 |
| Cow position: | chr23:24654141-24654406 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 6-270 |
| Cow position: | chr23:24547306-24547040 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 6-270 |
| Cow position: | chr23:24639240-24639506 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 187 |
| Conread position: | 6-270 |
| Cow position: | chr23:25698632-25698366 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 6-270 |
| Cow position: | chr23:25724103-25723837 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 6-272 |
| Cow position: | chr23:24535937-24535669 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 6-272 |
| Cow position: | chr23:24560866-24560598 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 7-226 |
| Cow position: | chr23:24535684-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-228 |
| Cow position: | chr23:25626724-25626946 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 7-243 |
| Cow position: | chr23:24535768-24535530 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 7-253 |
| Cow position: | chr23:24546885-24546637 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-263 |
| Cow position: | chr23:24654058-24654316 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-266 |
| Cow position: | chr23:24521953-24521693 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 7-266 |
| Cow position: | chr23:24560361-24560102 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 24, 233 |
| Conread position: | 7-266 |
| Cow position: | chr23:25626223-25626483 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 22, 256 |
| Conread position: | 7-270 |
| Cow position: | chr23:24560445-24560180 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-270 |
| Cow position: | chr23:25660344-25660610 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 7-271 |
| Cow position: | chr23:24546969-24546703 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-271 |
| Cow position: | chr23:24639409-24639675 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-271 |
| Cow position: | chr23:24639661-24639927 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-271 |
| Cow position: | chr23:24639829-24640095 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 21, 118 |
| Conread position: | 7-272 |
| Cow position: | chr23:24560613-24560346 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-272 |
| Cow position: | chr23:24626417-24626684 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-272 |
| Cow position: | chr23:24639493-24639760 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-272 |
| Cow position: | chr23:24639577-24639844 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 21, 181 |
| Conread position: | 7-272 |
| Cow position: | chr23:25626475-25626739 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 61 |
| Conread position: | 7-272 |
| Cow position: | chr23:25660428-25660695 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 181 |
| Conread position: | 7-273 |
| Cow position: | chr23:24560529-24560261 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-276 |
| Cow position: | chr23:24560697-24560426 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 7-282 |
| Cow position: | chr23:24547221-24546943 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 7-282 |
| Cow position: | chr23:25724018-25723740 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 190 |
| Conread position: | 7-285 |
| Cow position: | chr23:24626333-24626614 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-299 |
| Cow position: | chr23:24639745-24640040 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 40 |
| Conread position: | 7-306 |
| Cow position: | chr23:24522624-24522323 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 7-338 |
| Cow position: | chr23:24547137-24546801 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 292 |
| Conread position: | 50-265 |
| Cow position: | chr23:24639201-24639417 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 60-272 |
| Cow position: | chr23:24626303-24626516 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 66-276 |
| Cow position: | chr23:24522814-24522605 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 171, 24 |
| Conread position: | 74-272 |
| Cow position: | chr23:24654042-24654241 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 81-270 |
| Cow position: | chr23:24536029-24535839 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 81-272 |
| Cow position: | chr23:24547314-24547122 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 81-272 |
| Cow position: | chr23:24560874-24560682 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 147, 0 |
Show alignments to all cow chromosomes.