Cow genome map
| Conread name: | Ss1.1-rpgl13_o20.5 |
| Conread position: | 1-249 |
| Cow position: | chr25:36801477-36801727 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 1-299 |
| Cow position: | chr25:33305384-33305088 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 4-266 |
| Cow position: | chr25:34713971-34714234 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 259 |
| Conread position: | 5-271 |
| Cow position: | chr25:36800737-36801005 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-299 |
| Cow position: | chr25:34447044-34447341 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 122 |
| Conread position: | 6-182 |
| Cow position: | chr25:34433043-34433220 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-229 |
| Cow position: | chr25:33298754-33298978 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-249 |
| Cow position: | chr25:33298586-33298831 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 187 |
| Conread position: | 6-264 |
| Cow position: | chr25:34447297-34447557 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 22, 198 |
| Conread position: | 6-264 |
| Cow position: | chr25:34769933-34769673 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 6-264 |
| Cow position: | chr25:36801074-36801334 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-270 |
| Cow position: | chr25:23420322-23420588 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-270 |
| Cow position: | chr25:33157114-33156848 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-270 |
| Cow position: | chr25:34769597-34769331 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 6-272 |
| Cow position: | chr25:33127741-33128009 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-272 |
| Cow position: | chr25:34769513-34769245 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 6-272 |
| Cow position: | chr25:34769849-34769581 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 6-273 |
| Cow position: | chr25:34770017-34769748 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-285 |
| Cow position: | chr25:33298502-33298784 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 199 |
| Conread position: | 6-292 |
| Cow position: | chr25:23420406-23420697 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-306 |
| Cow position: | chr25:23420490-23420795 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 6-308 |
| Cow position: | chr25:33299342-33299649 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-328 |
| Cow position: | chr25:33299510-33299833 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 22, 292 |
| Conread position: | 7-202 |
| Cow position: | chr25:34446962-34447158 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 7-226 |
| Cow position: | chr25:33145206-33145426 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 7-226 |
| Cow position: | chr25:36801735-36801955 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-229 |
| Cow position: | chr25:33127994-33128217 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-230 |
| Cow position: | chr25:327031-327255 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 7-231 |
| Cow position: | chr25:23420575-23420800 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-235 |
| Cow position: | chr25:23420659-23420888 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-250 |
| Cow position: | chr25:33127910-33128155 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-257 |
| Cow position: | chr25:33157197-33156945 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 208 |
| Conread position: | 7-264 |
| Cow position: | chr25:33298839-33299098 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 185 |
| Conread position: | 7-265 |
| Cow position: | chr25:33299007-33299266 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 21, 186 |
| Conread position: | 7-265 |
| Cow position: | chr25:36800823-36801083 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 7-269 |
| Cow position: | chr25:33157029-33156765 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 7-270 |
| Cow position: | chr25:34714058-34714324 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-271 |
| Cow position: | chr25:33145122-33145388 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 7-271 |
| Cow position: | chr25:33298671-33298937 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 7-271 |
| Cow position: | chr25:36800655-36800921 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 7-271 |
| Cow position: | chr25:36801651-36801917 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-272 |
| Cow position: | chr25:33157281-33157014 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 7-272 |
| Cow position: | chr25:34447130-34447397 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 21, 116 |
| Conread position: | 7-272 |
| Cow position: | chr25:34769680-34769413 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-273 |
| Cow position: | chr25:34770100-34769832 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 7-281 |
| Cow position: | chr25:33299091-33299368 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 7-285 |
| Cow position: | chr25:33127826-33128107 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-285 |
| Cow position: | chr25:34447382-34447663 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 7-285 |
| Cow position: | chr25:36800907-36801188 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 195 |
| Conread position: | 7-285 |
| Cow position: | chr25:36801567-36801848 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 40 |
| Conread position: | 7-308 |
| Cow position: | chr25:33299175-33299481 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 22-282 |
| Cow position: | chr25:18642216-18641950 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 50-249 |
| Cow position: | chr25:34433004-34433204 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 66-272 |
| Cow position: | chr25:34433524-34433728 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 40, 54 |
| Conread position: | 81-263 |
| Cow position: | chr25:34446953-34447136 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 125, 133 |
| Conread position: | 81-272 |
| Cow position: | chr25:34770109-34769917 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 86-307 |
| Cow position: | chr25:23420319-23420544 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 145, 0 |
Show alignments to all cow chromosomes.