Cow genome map
| Conread name: | Ss1.1-rpgl13_o20.5 |
| Conread position: | 1-270 |
| Cow position: | chr7:1014291-1014562 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-270 |
| Cow position: | chr7:1439992-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 130 |
| Conread position: | 1-272 |
| Cow position: | chr7:8325339-8325612 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 30 |
| Conread position: | 1-273 |
| Cow position: | chr7:3180303-3180577 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-273 |
| Cow position: | chr7:8325843-8326117 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 120 |
| Conread position: | 1-283 |
| Cow position: | chr7:3179715-3180000 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-286 |
| Cow position: | chr7:1439826-1440112 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 1-318 |
| Cow position: | chr7:1015041-1015363 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 28, 195 |
| Conread position: | 6-226 |
| Cow position: | chr7:1015214-1015435 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 6-228 |
| Cow position: | chr7:42878497-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 6-232 |
| Cow position: | chr7:1014380-1014607 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 185 |
| Conread position: | 6-249 |
| Cow position: | chr7:18390353-18390598 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 121 |
| Conread position: | 6-249 |
| Cow position: | chr7:42879169-42878924 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 6-269 |
| Cow position: | chr7:1439914-1440178 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 61 |
| Conread position: | 6-270 |
| Cow position: | chr7:3179804-3180070 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 6-270 |
| Cow position: | chr7:3180056-3180322 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 6-271 |
| Cow position: | chr7:42879253-42878986 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 121 |
| Conread position: | 6-272 |
| Cow position: | chr7:1014794-1015062 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 200 |
| Conread position: | 6-272 |
| Cow position: | chr7:3180476-3180744 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 6-272 |
| Cow position: | chr7:8277955-8278223 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 106 |
| Conread position: | 6-272 |
| Cow position: | chr7:8324840-8325108 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 28, 100 |
| Conread position: | 6-272 |
| Cow position: | chr7:18390269-18390537 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-273 |
| Cow position: | chr7:8325008-8325277 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 6-278 |
| Cow position: | chr7:42879001-42878727 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-283 |
| Cow position: | chr7:1014878-1015158 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 6-283 |
| Cow position: | chr7:3180392-3180672 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 6-293 |
| Cow position: | chr7:1438440-1438730 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 110 |
| Conread position: | 6-306 |
| Cow position: | chr7:1439748-1440050 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 6-307 |
| Cow position: | chr7:3179888-3180194 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 6-307 |
| Cow position: | chr7:42878581-42878275 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 6-307 |
| Cow position: | chr7:42879085-42878779 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 7-200 |
| Cow position: | chr7:1440082-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 7-228 |
| Cow position: | chr7:11600659-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-248 |
| Cow position: | chr7:8278208-8278451 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 105 |
| Conread position: | 7-265 |
| Cow position: | chr7:42878664-42878405 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 20, 256 |
| Conread position: | 7-270 |
| Cow position: | chr7:1014711-1014976 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 17, 156 |
| Conread position: | 7-270 |
| Cow position: | chr7:1014963-1015228 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 7-271 |
| Cow position: | chr7:3180141-3180407 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 7-271 |
| Cow position: | chr7:42878748-42878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 7-271 |
| Cow position: | chr7:42878916-42878650 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-272 |
| Cow position: | chr7:1015131-1015398 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-272 |
| Cow position: | chr7:3180225-3180492 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 7-272 |
| Cow position: | chr7:11601079-11600812 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 21, 205 |
| Conread position: | 7-272 |
| Cow position: | chr7:18390438-18390705 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-273 |
| Cow position: | chr7:11600827-11600559 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 187 |
| Conread position: | 7-285 |
| Cow position: | chr7:11600743-11600462 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 7-285 |
| Cow position: | chr7:18390186-18390467 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 7-308 |
| Cow position: | chr7:3180561-3180866 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 233 |
| Conread position: | 7-318 |
| Cow position: | chr7:11600995-11600679 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 25, 124 |
| Conread position: | 8-280 |
| Cow position: | chr7:18390103-18390377 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 27, 98 |
| Conread position: | 13-249 |
| Cow position: | chr7:11601157-11600919 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 13, 96 |
| Conread position: | 27-230 |
| Cow position: | chr7:3179994-3180197 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-280 |
| Cow position: | chr7:1439532-1439772 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 153, 56 |
| Conread position: | 50-271 |
| Cow position: | chr7:1439454-1439674 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 50-273 |
| Cow position: | chr7:11601203-11600979 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 57, 68 |
| Conread position: | 66-271 |
| Cow position: | chr7:42879276-42879070 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 171, 0 |
Show alignments to all cow chromosomes.