Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rpgl18_p2.5
        

               Conread position:
               330-607
               

               Cow position:
               chr1:64803838-64804121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               35, 14
               

               Conread position:
               337-662
               

               Cow position:
               chr1:31934756-31934429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               228
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               79, 115
               

               Conread position:
               347-566
               

               Cow position:
               chr1:45578786-45578561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 44
               

               Conread position:
               348-652
               

               Cow position:
               chr1:35162646-35162337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               216
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               91, 70
               

               Conread position:
               349-583
               

               Cow position:
               chr1:10716746-10716502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               16, 205
               

               Conread position:
               351-534
               

               Cow position:
               chr1:51469789-51469596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               351-550
               

               Cow position:
               chr1:53457050-53456849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               65, 114
               

               Conread position:
               351-574
               

               Cow position:
               chr1:85339621-85339401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               8, 71
               

               Conread position:
               351-582
               

               Cow position:
               chr1:81477623-81477863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               21, 118
               

               Conread position:
               351-596
               

               Cow position:
               chr1:1496289-1496540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               13, 39
               

               Conread position:
               351-692
               

               Cow position:
               chr1:6304640-6304976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               243, 31
               

               Conread position:
               352-575
               

               Cow position:
               chr1:70416539-70416747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               352-607
               

               Cow position:
               chr1:11913644-11913898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               43, 8
               

               Conread position:
               352-615
               

               Cow position:
               chr1:72422168-72422433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               37, 98
               

               Conread position:
               353-585
               

               Cow position:
               chr1:70483100-70483331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               61, 25
               

               Conread position:
               353-690
               

               Cow position:
               chr1:73960923-73960594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               235
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               34, 91
               

               Conread position:
               354-610
               

               Cow position:
               chr1:49334155-49334414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               30, 111
               

               Conread position:
               355-660
               

               Cow position:
               chr1:18936604-18936910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               6, 23
               

               Conread position:
               356-605
               

               Cow position:
               chr1:97232203-97231943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               62, 33
               

               Conread position:
               356-615
               

               Cow position:
               chr1:97144238-97144492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               112, 62
               

               Conread position:
               357-525
               

               Cow position:
               chr1:27898626-27898796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               100, 20
               

               Conread position:
               357-550
               

               Cow position:
               chr1:709671-709862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               65, 106
               

               Conread position:
               357-573
               

               Cow position:
               chr1:46939643-46939870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               33, 103
               

               Conread position:
               357-611
               

               Cow position:
               chr1:42537069-42537346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               59, 169
               

               Conread position:
               357-615
               

               Cow position:
               chr1:21561252-21560986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               55, 110
               

               Conread position:
               357-648
               

               Cow position:
               chr1:55230204-55229916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               68, 32
               

               Conread position:
               357-684
               

               Cow position:
               chr1:38419260-38418924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               32, 109
               

               Conread position:
               358-662
               

               Cow position:
               chr1:31272210-31272524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               224
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               17, 106
               

               Conread position:
               360-612
               

               Cow position:
               chr1:81290732-81290483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               65, 29
               

               Conread position:
               360-615
               

               Cow position:
               chr1:21093337-21093090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               163, 42
               

               Conread position:
               361-538
               

               Cow position:
               chr1:81615877-81615704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               54, 28
               

               Conread position:
               361-550
               

               Cow position:
               chr1:42292147-42291963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               17, 98
               

               Conread position:
               361-563
               

               Cow position:
               chr1:55110728-55110517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               56, 20
               

               Conread position:
               361-575
               

               Cow position:
               chr1:73534416-73534628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               54, 17
               

               Conread position:
               361-575
               

               Cow position:
               chr1:76518642-76518435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               361-579
               

               Cow position:
               chr1:69378369-69378589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               19, 102
               

               Conread position:
               361-580
               

               Cow position:
               chr1:84595118-84594896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               64, 28
               

               Conread position:
               361-597
               

               Cow position:
               chr1:102730527-102730772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               33, 107
               

               Conread position:
               361-603
               

               Cow position:
               chr1:17317116-17317371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               55, 21
               

               Conread position:
               361-606
               

               Cow position:
               chr1:73020433-73020680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               28, 103
               

               Conread position:
               361-606
               

               Cow position:
               chr1:101177751-101177497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               38, 107
               

               Conread position:
               361-617
               

               Cow position:
               chr1:38706624-38706881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               24, 103
               

               Conread position:
               361-647
               

               Cow position:
               chr1:96599075-96599348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               27, 84
               

               Conread position:
               361-652
               

               Cow position:
               chr1:69265055-69264740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               237
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               47, 226
               

               Conread position:
               361-660
               

               Cow position:
               chr1:101632121-101632420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               228
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               22, 68
               

               Conread position:
               361-662
               

               Cow position:
               chr1:46030134-46030439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               216
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               24, 60
               

               Conread position:
               361-662
               

               Cow position:
               chr1:47790439-47790749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               28, 93
               

               Conread position:
               361-662
               

               Cow position:
               chr1:48581345-48581048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               218
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               143, 48
               

               Conread position:
               361-662
               

               Cow position:
               chr1:53370312-53370000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               218
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               55, 101
               

               Conread position:
               361-662
               

               Cow position:
               chr1:63434570-63434889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               361-662
               

               Cow position:
               chr1:100552194-100551886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               217
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               187, 54
               

               Conread position:
               361-690
               

               Cow position:
               chr1:36998410-36998084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               62, 55
               

               Conread position:
               361-690
               

               Cow position:
               chr1:41137917-41138243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               18, 103
               

               Conread position:
               362-594
               

               Cow position:
               chr1:93590361-93590592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               22, 89
               

               Conread position:
               362-612
               

               Cow position:
               chr1:87094996-87095238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               176
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               220, 25
               

               Conread position:
               362-629
               

               Cow position:
               chr1:100823266-100822999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               54, 27
               

               Conread position:
               362-652
               

               Cow position:
               chr1:72011595-72011881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               211
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               250, 53
               

               Conread position:
               362-659
               

               Cow position:
               chr1:23998695-23999006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               213
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               28, 48
               

               Conread position:
               362-662
               

               Cow position:
               chr1:7443211-7442900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               212
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               23, 115
               

               Conread position:
               362-662
               

               Cow position:
               chr1:7748444-7748137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               210
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               12, 103
               

               Conread position:
               362-662
               

               Cow position:
               chr1:7752608-7752303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               12, 103
               

               Conread position:
               362-678
               

               Cow position:
               chr1:94226318-94226651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               51, 29
               

               Conread position:
               363-552
               

               Cow position:
               chr1:82917257-82917439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               363-561
               

               Cow position:
               chr1:88231541-88231738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               94, 26
               

               Conread position:
               363-566
               

               Cow position:
               chr1:68730230-68730023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               53, 105
               

               Conread position:
               363-575
               

               Cow position:
               chr1:98556893-98557106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               49, 26
               

               Conread position:
               363-576
               

               Cow position:
               chr1:38544019-38544240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               21, 191
               

               Conread position:
               363-603
               

               Cow position:
               chr1:28563335-28563581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               53, 113
               

               Conread position:
               363-606
               

               Cow position:
               chr1:95835567-95835816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               24, 91
               

               Conread position:
               363-613
               

               Cow position:
               chr1:196781-197030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               50, 15
               

               Conread position:
               363-648
               

               Cow position:
               chr1:72304175-72304445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               22, 54
               

               Conread position:
               363-662
               

               Cow position:
               chr1:6590265-6589957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               11, 82
               

               Conread position:
               363-662
               

               Cow position:
               chr1:20667524-20667825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               222
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               53, 60
               

               Conread position:
               363-662
               

               Cow position:
               chr1:65318792-65318495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               250, 39
               

               Conread position:
               363-665
               

               Cow position:
               chr1:78857102-78857406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               222
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               57, 24
               

               Conread position:
               364-607
               

               Cow position:
               chr1:3324088-3323849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               116, 38
               

               Conread position:
               364-612
               

               Cow position:
               chr1:36688155-36688402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               52, 96
               

               Conread position:
               364-662
               

               Cow position:
               chr1:22730960-22730662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               9, 104
               

               Conread position:
               365-568
               

               Cow position:
               chr1:6398291-6398502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               57, 39
               

               Conread position:
               365-583
               

               Cow position:
               chr1:48105201-48105425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               51, 166
               

               Conread position:
               365-652
               

               Cow position:
               chr1:82936383-82936664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               227, 23
               

               Conread position:
               366-552
               

               Cow position:
               chr1:79001623-79001812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               43, 23
               

               Conread position:
               366-559
               

               Cow position:
               chr1:45535990-45535792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               47, 71
               

               Conread position:
               366-580
               

               Cow position:
               chr1:55685756-55685970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               57, 16
               

               Conread position:
               366-586
               

               Cow position:
               chr1:87220666-87220462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               18, 75
               

               Conread position:
               366-607
               

               Cow position:
               chr1:71665712-71665951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               50, 23
               

               Conread position:
               366-612
               

               Cow position:
               chr1:500398-500151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               57, 25
               

               Conread position:
               366-612
               

               Cow position:
               chr1:89388565-89388316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               50, 12
               

               Conread position:
               366-612
               

               Cow position:
               chr1:101507573-101507336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               366-612
               

               Cow position:
               chr1:102468401-102468640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               57, 26
               

               Conread position:
               366-660
               

               Cow position:
               chr1:1878246-1877949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               47, 82
               

               Conread position:
               366-661
               

               Cow position:
               chr1:82880865-82880562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               218
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               47, 54
               

               Conread position:
               366-662
               

               Cow position:
               chr1:23968842-23969120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               288, 53
               

               Conread position:
               366-662
               

               Cow position:
               chr1:53623177-53622877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               28, 16
               

               Conread position:
               367-579
               

               Cow position:
               chr1:53540808-53540581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               367-583
               

               Cow position:
               chr1:95156743-95156959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               56, 51
               

               Conread position:
               367-615
               

               Cow position:
               chr1:29935169-29935411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               54, 74
               

               Conread position:
               368-555
               

               Cow position:
               chr1:79169933-79170120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               47, 23
               

               Conread position:
               368-573
               

               Cow position:
               chr1:89297886-89298095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               44, 97
               

               Conread position:
               368-573
               

               Cow position:
               chr1:89301495-89301704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               44, 97
               

               Conread position:
               368-580
               

               Cow position:
               chr1:83004886-83004661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               46, 191
               

               Conread position:
               368-586
               

               Cow position:
               chr1:95153096-95152873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               21, 97
               

               Conread position:
               368-603
               

               Cow position:
               chr1:14106388-14106633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               47, 21
               

               Conread position:
               368-607
               

               Cow position:
               chr1:98897469-98897713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               45, 98
               

               Conread position:
               368-612
               

               Cow position:
               chr1:67529277-67529031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               47, 93
               

               Conread position:
               368-614
               

               Cow position:
               chr1:52435497-52435246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               21, 100
               

               Conread position:
               368-651
               

               Cow position:
               chr1:92684460-92684763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               220
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               368-661
               

               Cow position:
               chr1:34771278-34771586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 95
               

               Conread position:
               368-662
               

               Cow position:
               chr1:72105623-72105328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               16, 69
               

               Conread position:
               368-665
               

               Cow position:
               chr1:84103848-84104138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               293, 34
               

               Conread position:
               369-595
               

               Cow position:
               chr1:66898273-66898505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               15, 98
               

               Conread position:
               369-612
               

               Cow position:
               chr1:61885130-61884889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               47, 18
               

               Conread position:
               369-613
               

               Cow position:
               chr1:77739944-77739697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               45, 95
               

               Conread position:
               369-614
               

               Cow position:
               chr1:6731398-6731155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               88, 20
               

               Conread position:
               369-614
               

               Cow position:
               chr1:89381493-89381252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               66, 26
               

               Conread position:
               369-660
               

               Cow position:
               chr1:7971623-7971334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               203, 20
               

               Conread position:
               369-661
               

               Cow position:
               chr1:88913540-88913236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               45, 83
               

               Conread position:
               369-663
               

               Cow position:
               chr1:10778773-10778482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               240, 13
               

               Conread position:
               369-697
               

               Cow position:
               chr1:724957-724621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               42, 19
               

               Conread position:
               369-701
               

               Cow position:
               chr1:484243-484588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               47, 83
               

               Conread position:
               369-701
               

               Cow position:
               chr1:29626701-29627031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               114, 33
               

               Conread position:
               370-583
               

               Cow position:
               chr1:62998016-62997804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               33, 93
               

               Conread position:
               370-607
               

               Cow position:
               chr1:16060790-16061023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               46, 19
               

               Conread position:
               370-607
               

               Cow position:
               chr1:49824846-49825085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               43, 96
               

               Conread position:
               370-613
               

               Cow position:
               chr1:74083980-74084213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               175, 32
               

               Conread position:
               370-614
               

               Cow position:
               chr1:8287411-8287656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               43, 96
               

               Conread position:
               370-639
               

               Cow position:
               chr1:71789929-71790203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               46, 90
               

               Conread position:
               370-662
               

               Cow position:
               chr1:3962457-3962778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               43, 77
               

               Conread position:
               370-662
               

               Cow position:
               chr1:42541810-42541513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               218
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               98, 41
               

               Conread position:
               370-662
               

               Cow position:
               chr1:46031181-46030876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               207
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               19, 95
               

               Conread position:
               370-662
               

               Cow position:
               chr1:78079942-78079637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               44, 118
               

               Conread position:
               370-662
               

               Cow position:
               chr1:84238900-84239196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               20, 234
               

               Conread position:
               370-690
               

               Cow position:
               chr1:91023249-91023579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               228
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               46, 80
               

               Conread position:
               371-574
               

               Cow position:
               chr1:25021859-25022061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               13, 48
               

               Conread position:
               371-594
               

               Cow position:
               chr1:81568811-81569034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               45, 81
               

               Conread position:
               371-614
               

               Cow position:
               chr1:79844697-79844437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               371-646
               

               Cow position:
               chr1:40192484-40192754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               19, 96
               

               Conread position:
               371-660
               

               Cow position:
               chr1:24777764-24778067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               17, 159
               

               Conread position:
               371-662
               

               Cow position:
               chr1:25735086-25734785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               45, 92
               

               Conread position:
               371-662
               

               Cow position:
               chr1:90975858-90976168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               44, 131
               

               Conread position:
               371-664
               

               Cow position:
               chr1:186063-186360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 157
               

               Conread position:
               371-678
               

               Cow position:
               chr1:56618438-56618750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               88, 56
               

               Conread position:
               372-580
               

               Cow position:
               chr1:13828371-13828578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               41, 25
               

               Conread position:
               372-605
               

               Cow position:
               chr1:99221126-99221368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               43, 17
               

               Conread position:
               372-607
               

               Cow position:
               chr1:102266064-102266287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               372-612
               

               Cow position:
               chr1:98551947-98551696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               35, 16
               

               Conread position:
               372-615
               

               Cow position:
               chr1:16961777-16962038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               42, 233
               

               Conread position:
               372-615
               

               Cow position:
               chr1:43505742-43505499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               13, 80
               

               Conread position:
               372-659
               

               Cow position:
               chr1:8834-8537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               44, 10
               

               Conread position:
               372-662
               

               Cow position:
               chr1:33206657-33206954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               44, 94
               

               Conread position:
               372-690
               

               Cow position:
               chr1:68844939-68845268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               44, 241
               

               Conread position:
               373-612
               

               Cow position:
               chr1:816181-816433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               41, 186
               

               Conread position:
               373-615
               

               Cow position:
               chr1:85712677-85712415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               39, 138
               

               Conread position:
               373-648
               

               Cow position:
               chr1:78067834-78068133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               217
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               43, 133
               

               Conread position:
               373-652
               

               Cow position:
               chr1:64572730-64572441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               43, 94
               

               Conread position:
               374-613
               

               Cow position:
               chr1:100474454-100474209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               186
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               42, 92
               

               Conread position:
               374-662
               

               Cow position:
               chr1:20950933-20950638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               16, 223
               

               Conread position:
               374-678
               

               Cow position:
               chr1:22526089-22525777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               215, 54
               

               Conread position:
               375-652
               

               Cow position:
               chr1:6826078-6826367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               41, 176
               

               Conread position:
               377-607
               

               Cow position:
               chr1:87198018-87197801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               377-614
               

               Cow position:
               chr1:15334101-15333868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               15, 76
               

               Conread position:
               377-661
               

               Cow position:
               chr1:33330890-33331170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               48, 57
               

               Conread position:
               377-662
               

               Cow position:
               chr1:89741784-89742079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               69, 82
               

               Conread position:
               377-690
               

               Cow position:
               chr1:75745072-75744749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               35, 86
               

               Conread position:
               378-538
               

               Cow position:
               chr1:54645634-54645477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               378-551
               

               Cow position:
               chr1:50843649-50843815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               378-561
               

               Cow position:
               chr1:100800558-100800742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               38, 65
               

               Conread position:
               378-563
               

               Cow position:
               chr1:29971329-29971517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               35, 20
               

               Conread position:
               378-566
               

               Cow position:
               chr1:1605920-1606112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               33, 88
               

               Conread position:
               378-573
               

               Cow position:
               chr1:63461089-63460893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               35, 86
               

               Conread position:
               378-579
               

               Cow position:
               chr1:55194019-55194237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               378-580
               

               Cow position:
               chr1:9437074-9437281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               16, 106
               

               Conread position:
               378-585
               

               Cow position:
               chr1:92188170-92187960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               37, 47
               

               Conread position:
               378-599
               

               Cow position:
               chr1:22827372-22827146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               62, 38
               

               Conread position:
               378-603
               

               Cow position:
               chr1:43311559-43311787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               13, 81
               

               Conread position:
               378-606
               

               Cow position:
               chr1:852385-852152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               12, 87
               

               Conread position:
               378-606
               

               Cow position:
               chr1:66752421-66752647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               45, 40
               

               Conread position:
               378-612
               

               Cow position:
               chr1:92197665-92197431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               35, 56
               

               Conread position:
               378-615
               

               Cow position:
               chr1:15206671-15206899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               35, 66
               

               Conread position:
               378-619
               

               Cow position:
               chr1:22824120-22823874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               38, 74
               

               Conread position:
               378-641
               

               Cow position:
               chr1:48618036-48618301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               215, 40
               

               Conread position:
               378-641
               

               Cow position:
               chr1:88360095-88359819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               206
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               37, 11
               

               Conread position:
               378-644
               

               Cow position:
               chr1:76739703-76739960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               378-647
               

               Cow position:
               chr1:50930769-50931044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               43, 82
               

               Conread position:
               378-647
               

               Cow position:
               chr1:96019439-96019166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               37, 85
               

               Conread position:
               378-650
               

               Cow position:
               chr1:56225993-56225717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               34, 47
               

               Conread position:
               378-650
               

               Cow position:
               chr1:77232358-77232644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               17, 255
               

               Conread position:
               378-661
               

               Cow position:
               chr1:59519122-59518838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               193, 40
               

               Conread position:
               378-662
               

               Cow position:
               chr1:48443979-48444277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               9, 89
               

               Conread position:
               378-662
               

               Cow position:
               chr1:49317290-49317579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               205
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               34, 74
               

               Conread position:
               378-662
               

               Cow position:
               chr1:55428742-55429038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               38, 88
               

               Conread position:
               378-662
               

               Cow position:
               chr1:57575551-57575842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               10, 88
               

               Conread position:
               378-662
               

               Cow position:
               chr1:78794025-78794308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               208
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               226, 36
               

               Conread position:
               378-662
               

               Cow position:
               chr1:85688396-85688105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               38, 132
               

               Conread position:
               378-662
               

               Cow position:
               chr1:91065946-91066236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               35, 74
               

               Conread position:
               378-662
               

               Cow position:
               chr1:101280526-101280799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               13, 20
               

               Conread position:
               378-665
               

               Cow position:
               chr1:3923593-3923880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               214, 40
               

               Conread position:
               378-690
               

               Cow position:
               chr1:45555576-45555253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               232
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               38, 61
               

               Conread position:
               378-690
               

               Cow position:
               chr1:93499828-93499515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               38, 9
               

               Conread position:
               379-562
               

               Cow position:
               chr1:90820270-90820451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               46, 79
               

               Conread position:
               379-564
               

               Cow position:
               chr1:3815471-3815660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               40, 86
               

               Conread position:
               379-570
               

               Cow position:
               chr1:63212048-63212240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               11, 79
               

               Conread position:
               379-575
               

               Cow position:
               chr1:52679800-52679599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               17, 57
               

               Conread position:
               379-577
               

               Cow position:
               chr1:64458182-64457976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               35, 88
               

               Conread position:
               379-580
               

               Cow position:
               chr1:100812091-100812283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               48, 19
               

               Conread position:
               379-582
               

               Cow position:
               chr1:78811248-78811044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               46, 80
               

               Conread position:
               379-614
               

               Cow position:
               chr1:102648490-102648253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               37, 84
               

               Conread position:
               379-615
               

               Cow position:
               chr1:64329142-64328895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               33, 135
               

               Conread position:
               379-660
               

               Cow position:
               chr1:3605679-3605961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               37, 79
               

               Conread position:
               379-661
               

               Cow position:
               chr1:72356578-72356276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               37, 112
               

               Conread position:
               379-662
               

               Cow position:
               chr1:72034718-72035008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               37, 58
               

               Conread position:
               379-662
               

               Cow position:
               chr1:97611463-97611736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               200
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               230, 74
               

               Conread position:
               379-690
               

               Cow position:
               chr1:20104476-20104157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               46, 80
               

               Conread position:
               380-607
               

               Cow position:
               chr1:7908234-7908018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               380-652
               

               Cow position:
               chr1:37706760-37707046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               35, 177
               

               Conread position:
               380-690
               

               Cow position:
               chr1:68826714-68827015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               10, 69
               

               Conread position:
               382-562
               

               Cow position:
               chr1:82505200-82505031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               382-566
               

               Cow position:
               chr1:23180313-23180116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               382-568
               

               Cow position:
               chr1:42775113-42774930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               382-569
               

               Cow position:
               chr1:42175935-42175746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               34, 82
               

               Conread position:
               382-569
               

               Cow position:
               chr1:102523433-102523622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               43, 80
               

               Conread position:
               382-570
               

               Cow position:
               chr1:32035507-32035692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               33, 81
               

               Conread position:
               382-572
               

               Cow position:
               chr1:32014399-32014212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               10, 37
               

               Conread position:
               382-573
               

               Cow position:
               chr1:39683935-39684129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               30, 82
               

               Conread position:
               382-575
               

               Cow position:
               chr1:73551295-73551497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               34, 85
               

               Conread position:
               382-579
               

               Cow position:
               chr1:75080332-75080547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               34, 146
               

               Conread position:
               382-582
               

               Cow position:
               chr1:46172812-46172611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               27, 80
               

               Conread position:
               382-583
               

               Cow position:
               chr1:87149609-87149810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               41, 36
               

               Conread position:
               382-604
               

               Cow position:
               chr1:242759-242541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               382-606
               

               Cow position:
               chr1:25383876-25383651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               43, 76
               

               Conread position:
               382-607
               

               Cow position:
               chr1:55753012-55753234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               43, 49
               

               Conread position:
               382-607
               

               Cow position:
               chr1:67919335-67919116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               41, 47
               

               Conread position:
               382-607
               

               Cow position:
               chr1:83072647-83072422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               34, 12
               

               Conread position:
               382-611
               

               Cow position:
               chr1:41056886-41056656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               43, 21
               

               Conread position:
               382-613
               

               Cow position:
               chr1:37917972-37918214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               34, 114
               

               Conread position:
               382-636
               

               Cow position:
               chr1:76735272-76735527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               46, 40
               

               Conread position:
               382-642
               

               Cow position:
               chr1:100852909-100852656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               188
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               34, 49
               

               Conread position:
               382-648
               

               Cow position:
               chr1:19515410-19515683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               34, 77
               

               Conread position:
               382-650
               

               Cow position:
               chr1:30189364-30189076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               30, 84
               

               Conread position:
               382-652
               

               Cow position:
               chr1:1956131-1956406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               202
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               22, 66
               

               Conread position:
               382-653
               

               Cow position:
               chr1:102768382-102768113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               40, 79
               

               Conread position:
               382-662
               

               Cow position:
               chr1:22192977-22192681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               34, 71
               

               Conread position:
               382-662
               

               Cow position:
               chr1:34160035-34159754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               144, 36
               

               Conread position:
               382-662
               

               Cow position:
               chr1:39426810-39427085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               223, 31
               

               Conread position:
               382-662
               

               Cow position:
               chr1:63530767-63530491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               14, 37
               

               Conread position:
               382-662
               

               Cow position:
               chr1:68618732-68619016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               14, 69
               

               Conread position:
               382-662
               

               Cow position:
               chr1:68763477-68763766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               37, 81
               

               Conread position:
               382-662
               

               Cow position:
               chr1:79164875-79165168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               34, 120
               

               Conread position:
               382-690
               

               Cow position:
               chr1:44507175-44506857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               34, 85
               

               Conread position:
               382-690
               

               Cow position:
               chr1:69539892-69539586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               91, 34
               

               Conread position:
               382-690
               

               Cow position:
               chr1:69694800-69695103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               233
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               194, 63
               

               Conread position:
               383-571
               

               Cow position:
               chr1:525012-524825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               42, 76
               

               Conread position:
               383-571
               

               Cow position:
               chr1:5872568-5872762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               30, 83
               

               Conread position:
               383-580
               

               Cow position:
               chr1:81364470-81364268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               6, 81
               

               Conread position:
               383-583
               

               Cow position:
               chr1:99604986-99605182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               32, 57
               

               Conread position:
               383-595
               

               Cow position:
               chr1:52912686-52912904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               30, 84
               

               Conread position:
               383-613
               

               Cow position:
               chr1:3966035-3965812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               33, 76
               

               Conread position:
               383-638
               

               Cow position:
               chr1:68126984-68127246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               42, 85
               

               Conread position:
               383-652
               

               Cow position:
               chr1:42887074-42887339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               33, 77
               

               Conread position:
               383-659
               

               Cow position:
               chr1:51394624-51394336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               30, 83
               

               Conread position:
               383-661
               

               Cow position:
               chr1:24132857-24133141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               205
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               28, 69
               

               Conread position:
               383-661
               

               Cow position:
               chr1:89076417-89076711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               33, 128
               

               Conread position:
               383-661
               

               Cow position:
               chr1:101835022-101834741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               32, 81
               

               Conread position:
               383-662
               

               Cow position:
               chr1:43352446-43352741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               6, 82
               

               Conread position:
               383-662
               

               Cow position:
               chr1:77425318-77425019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               35, 216
               

               Conread position:
               383-689
               

               Cow position:
               chr1:20000550-20000862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               201, 35
               

               Conread position:
               383-690
               

               Cow position:
               chr1:54156528-54156843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               233
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               33, 77
               

               Conread position:
               384-575
               

               Cow position:
               chr1:77685773-77685968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               32, 54
               

               Conread position:
               384-583
               

               Cow position:
               chr1:30949187-30948997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               31, 56
               

               Conread position:
               384-586
               

               Cow position:
               chr1:67654120-67654318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               26, 77
               

               Conread position:
               384-607
               

               Cow position:
               chr1:24542365-24542588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               37, 67
               

               Conread position:
               384-607
               

               Cow position:
               chr1:52661971-52662191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               384-607
               

               Cow position:
               chr1:76612927-76613154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               27, 81
               

               Conread position:
               384-607
               

               Cow position:
               chr1:76657843-76658096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               384-613
               

               Cow position:
               chr1:84811736-84811964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               32, 56
               

               Conread position:
               384-614
               

               Cow position:
               chr1:81515444-81515206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               31, 80
               

               Conread position:
               384-616
               

               Cow position:
               chr1:57297702-57297454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               73, 15
               

               Conread position:
               384-650
               

               Cow position:
               chr1:96081679-96081410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               23, 75
               

               Conread position:
               384-662
               

               Cow position:
               chr1:84283276-84282991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               32, 75
               

               Conread position:
               384-690
               

               Cow position:
               chr1:53374633-53374320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               226
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               5, 78
               

               Conread position:
               384-690
               

               Cow position:
               chr1:56225671-56225355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               217
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               94, 38
               

               Conread position:
               384-714
               

               Cow position:
               chr1:82513147-82513492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               32, 81
               

               Conread position:
               385-536
               

               Cow position:
               chr1:59675798-59675655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               385-608
               

               Cow position:
               chr1:81858697-81858922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               50, 33
               

               Conread position:
               385-612
               

               Cow position:
               chr1:48206336-48206555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               30, 55
               

               Conread position:
               386-550
               

               Cow position:
               chr1:101151752-101151595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               139, 55
               

               Conread position:
               386-595
               

               Cow position:
               chr1:759220-759425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               386-662
               

               Cow position:
               chr1:6959071-6958793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               173, 16
               

               Conread position:
               386-662
               

               Cow position:
               chr1:34856433-34856714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               221, 16
               

               Conread position:
               387-583
               

               Cow position:
               chr1:95049663-95049859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 78
               

               Conread position:
               387-586
               

               Cow position:
               chr1:89449100-89448902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               25, 53
               

               Conread position:
               387-604
               

               Cow position:
               chr1:2462573-2462367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 60
               

               Conread position:
               387-610
               

               Cow position:
               chr1:63079203-63078988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               387-612
               

               Cow position:
               chr1:41027274-41027051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               29, 44
               

               Conread position:
               387-612
               

               Cow position:
               chr1:43872107-43872342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               29, 158
               

               Conread position:
               387-612
               

               Cow position:
               chr1:79004178-79003952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               29, 79
               

               Conread position:
               387-613
               

               Cow position:
               chr1:5023534-5023787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               387-613
               

               Cow position:
               chr1:73721566-73721336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               27, 65
               

               Conread position:
               387-613
               

               Cow position:
               chr1:83606254-83606476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               202, 70
               

               Conread position:
               387-614
               

               Cow position:
               chr1:72813820-72813592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               10, 78
               

               Conread position:
               387-662
               

               Cow position:
               chr1:45670844-45670555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               214
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               57, 167
               

               Conread position:
               387-662
               

               Cow position:
               chr1:53521107-53520828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 67
               

               Conread position:
               388-585
               

               Cow position:
               chr1:71945879-71946081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               28, 79
               

               Conread position:
               388-604
               

               Cow position:
               chr1:6381977-6381756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               25, 78
               

               Conread position:
               388-607
               

               Cow position:
               chr1:84010989-84010753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               388-629
               

               Cow position:
               chr1:95618842-95618603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               28, 78
               

               Conread position:
               388-662
               

               Cow position:
               chr1:2975799-2976077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               136, 14
               

               Conread position:
               388-662
               

               Cow position:
               chr1:75383164-75382911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               266, 32
               

               Conread position:
               389-607
               

               Cow position:
               chr1:8670988-8670754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               389-652
               

               Cow position:
               chr1:23633738-23633983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               93, 13
               

               Conread position:
               389-662
               

               Cow position:
               chr1:100422020-100421749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               79, 110
               

               Conread position:
               390-574
               

               Cow position:
               chr1:29671021-29671210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               25, 75
               

               Conread position:
               395-577
               

               Cow position:
               chr1:731776-731963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               20, 69
               

               Conread position:
               395-607
               

               Cow position:
               chr1:31357320-31357528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               18, 47
               

               Conread position:
               395-613
               

               Cow position:
               chr1:4032820-4032607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               6, 17
               

               Conread position:
               396-612
               

               Cow position:
               chr1:81912949-81913174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               17, 137
               

               Conread position:
               396-662
               

               Cow position:
               chr1:78810073-78809797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               204
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               20, 30
               

               Conread position:
               398-615
               

               Cow position:
               chr1:98413967-98413745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               23, 69
               

               Conread position:
               398-662
               

               Cow position:
               chr1:85549892-85550161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               209, 13
               

               Conread position:
               402-678
               

               Cow position:
               chr1:24534083-24534353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               210, 38
               

               Conread position:
               403-611
               

               Cow position:
               chr1:61741785-61741990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               11, 55
               

               Conread position:
               411-603
               

               Cow position:
               chr1:19304748-19304556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               37, 23
               

               Conread position:
               411-652
               

               Cow position:
               chr1:83748116-83747868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               190, 17
               

               Conread position:
               411-662
               

               Cow position:
               chr1:100741451-100741203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               181, 28
               

               Conread position:
               412-554
               

               Cow position:
               chr1:43296546-43296685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               412-564
               

               Cow position:
               chr1:362926-362775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               56, 26
               

               Conread position:
               412-566
               

               Cow position:
               chr1:23373029-23372881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               412-575
               

               Cow position:
               chr1:24656424-24656258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               56, 46
               

               Conread position:
               412-577
               

               Cow position:
               chr1:1802338-1802176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               155, 45
               

               Conread position:
               412-580
               

               Cow position:
               chr1:69411527-69411690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               158, 8
               

               Conread position:
               412-583
               

               Cow position:
               chr1:31630115-31630282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               412-591
               

               Cow position:
               chr1:48447638-48447470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               412-594
               

               Cow position:
               chr1:101525752-101525931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               412-605
               

               Cow position:
               chr1:69940656-69940840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               412-607
               

               Cow position:
               chr1:86579140-86578946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               45, 133
               

               Conread position:
               412-610
               

               Cow position:
               chr1:49980876-49980688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               412-611
               

               Cow position:
               chr1:92996718-92996914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               62, 31
               

               Conread position:
               412-612
               

               Cow position:
               chr1:49082914-49082719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               180, 45
               

               Conread position:
               412-612
               

               Cow position:
               chr1:54258737-54258543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               412-612
               

               Cow position:
               chr1:60987160-60986964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               153, 45
               

               Conread position:
               412-612
               

               Cow position:
               chr1:86340290-86340488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               40, 143
               

               Conread position:
               412-613
               

               Cow position:
               chr1:2972088-2971891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               144, 41
               

               Conread position:
               412-613
               

               Cow position:
               chr1:38277858-38278052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               412-613
               

               Cow position:
               chr1:73719639-73719435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               47, 177
               

               Conread position:
               412-613
               

               Cow position:
               chr1:86113228-86113424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               75, 46
               

               Conread position:
               412-614
               

               Cow position:
               chr1:72068663-72068863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               95, 43
               

               Conread position:
               412-631
               

               Cow position:
               chr1:36613076-36613304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               412-649
               

               Cow position:
               chr1:74832596-74832357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               45, 79
               

               Conread position:
               412-651
               

               Cow position:
               chr1:95558208-95557965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               113, 45
               

               Conread position:
               412-652
               

               Cow position:
               chr1:53402952-53402709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               149, 45
               

               Conread position:
               412-652
               

               Cow position:
               chr1:98512109-98511856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               190
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               34, 90
               

               Conread position:
               412-654
               

               Cow position:
               chr1:30983324-30983565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               84, 46
               

               Conread position:
               412-655
               

               Cow position:
               chr1:29481459-29481697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               96, 45
               

               Conread position:
               412-662
               

               Cow position:
               chr1:1053750-1053507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               201, 43
               

               Conread position:
               412-662
               

               Cow position:
               chr1:47886312-47886569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               171, 31
               

               Conread position:
               412-662
               

               Cow position:
               chr1:49433093-49433344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               193, 43
               

               Conread position:
               412-662
               

               Cow position:
               chr1:55357121-55357368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               156, 46
               

               Conread position:
               412-662
               

               Cow position:
               chr1:71119689-71119433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               184, 30
               

               Conread position:
               412-662
               

               Cow position:
               chr1:82337613-82337864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               197, 27
               

               Conread position:
               412-662
               

               Cow position:
               chr1:85867768-85867514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               45, 181
               

               Conread position:
               412-662
               

               Cow position:
               chr1:87888558-87888317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               53, 45
               

               Conread position:
               412-662
               

               Cow position:
               chr1:96558678-96558918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               177
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               95, 31
               

               Conread position:
               412-701
               

               Cow position:
               chr1:2075182-2075459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               269, 43
               

               Conread position:
               413-576
               

               Cow position:
               chr1:94823222-94823380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               413-594
               

               Cow position:
               chr1:45315464-45315642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               413-606
               

               Cow position:
               chr1:13637498-13637681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               413-608
               

               Cow position:
               chr1:95072510-95072312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               413-612
               

               Cow position:
               chr1:81481218-81481406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               413-613
               

               Cow position:
               chr1:48213978-48214178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               44, 130
               

               Conread position:
               413-614
               

               Cow position:
               chr1:57089511-57089705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               413-646
               

               Cow position:
               chr1:31855062-31855302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               38, 211
               

               Conread position:
               413-648
               

               Cow position:
               chr1:53458865-53458628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               172, 17
               

               Conread position:
               413-651
               

               Cow position:
               chr1:92032430-92032673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               63, 50
               

               Conread position:
               413-659
               

               Cow position:
               chr1:91811949-91811702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               77, 46
               

               Conread position:
               413-662
               

               Cow position:
               chr1:6941633-6941380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               146, 30
               

               Conread position:
               413-662
               

               Cow position:
               chr1:17196458-17196713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               139, 30
               

               Conread position:
               413-665
               

               Cow position:
               chr1:61005393-61005641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               179, 30
               

               Conread position:
               413-690
               

               Cow position:
               chr1:62964435-62964167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               189, 51
               

               Conread position:
               413-690
               

               Cow position:
               chr1:82884209-82884501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               45, 115
               

               Conread position:
               414-652
               

               Cow position:
               chr1:71078796-71079030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               84, 29
               

               Conread position:
               415-646
               

               Cow position:
               chr1:52487813-52488035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               424-563
               

               Cow position:
               chr1:73494435-73494571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               424-566
               

               Cow position:
               chr1:67539718-67539581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               136, 31
               

               Conread position:
               424-632
               

               Cow position:
               chr1:43148383-43148591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               158, 10
               

               Conread position:
               424-661
               

               Cow position:
               chr1:89350129-89349880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               25, 36
               

               Conread position:
               430-608
               

               Cow position:
               chr1:85162386-85162567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               27, 157
               

               Conread position:
               431-575
               

               Cow position:
               chr1:46100681-46100827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               431-659
               

               Cow position:
               chr1:80336089-80336324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               11, 160
               

               Conread position:
               432-570
               

               Cow position:
               chr1:10421864-10421726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               25, 48
               

               Conread position:
               434-561
               

               Cow position:
               chr1:34318631-34318759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               99
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               434-565
               

               Cow position:
               chr1:49358201-49358071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               434-571
               

               Cow position:
               chr1:99024076-99024214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               110
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               434-575
               

               Cow position:
               chr1:81452509-81452367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               33, 114
               

               Conread position:
               434-613
               

               Cow position:
               chr1:77880580-77880755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               23, 45
               

               Conread position:
               434-614
               

               Cow position:
               chr1:81580332-81580152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               23, 107
               

               Conread position:
               434-636
               

               Cow position:
               chr1:67918912-67918711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               26, 67
               

               Conread position:
               434-645
               

               Cow position:
               chr1:98576202-98575980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               434-650
               

               Cow position:
               chr1:6240128-6240349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               23, 75
               

               Conread position:
               434-652
               

               Cow position:
               chr1:68672447-68672672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               23, 113
               

               Conread position:
               434-655
               

               Cow position:
               chr1:76436633-76436411 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               206, 24
               

               Conread position:
               434-661
               

               Cow position:
               chr1:45553090-45553326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               151, 24
               

               Conread position:
               434-662
               

               Cow position:
               chr1:21836084-21835862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               222, 24
               

               Conread position:
               434-662
               

               Cow position:
               chr1:23512505-23512738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               30, 67
               

               Conread position:
               434-662
               

               Cow position:
               chr1:33996769-33997001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               434-662
               

               Cow position:
               chr1:50992087-50991851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               23, 44
               

               Conread position:
               434-662
               

               Cow position:
               chr1:95153377-95153136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               23, 141
               

               Conread position:
               434-690
               

               Cow position:
               chr1:65909665-65909416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               194
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               23, 52
               

               Conread position:
               435-662
               

               Cow position:
               chr1:75933417-75933189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               114, 29
               

               Conread position:
               436-615
               

               Cow position:
               chr1:74081830-74082009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               169, 42
               

               Conread position:
               436-662
               

               Cow position:
               chr1:9534314-9534089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               34, 50
               

               Conread position:
               436-662
               

               Cow position:
               chr1:24406743-24406977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               22, 84
               

               Conread position:
               436-662
               

               Cow position:
               chr1:28177152-28176926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               169, 19
               

               Conread position:
               438-607
               

               Cow position:
               chr1:3914771-3914937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               155, 11
               

               Conread position:
               438-615
               

               Cow position:
               chr1:65881956-65881781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               19, 63
               

               Conread position:
               438-662
               

               Cow position:
               chr1:6972679-6972446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               439-663
               

               Cow position:
               chr1:19885530-19885299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               170, 108
               

               Conread position:
               440-607
               

               Cow position:
               chr1:43311883-43312050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               441-575
               

               Cow position:
               chr1:42822414-42822284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               441-607
               

               Cow position:
               chr1:28470978-28470807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               441-662
               

               Cow position:
               chr1:1165745-1165519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               69, 49
               

               Conread position:
               441-662
               

               Cow position:
               chr1:72285920-72286140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               165
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               17, 10
               

               Conread position:
               442-561
               

               Cow position:
               chr1:70291934-70291814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               10, 26
               

               Conread position:
               442-561
               

               Cow position:
               chr1:76080951-76080834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               98
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               443-610
               

               Cow position:
               chr1:68253739-68253571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               57, 15
               

               Conread position:
               443-615
               

               Cow position:
               chr1:9143864-9143695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               14, 111
               

               Conread position:
               443-615
               

               Cow position:
               chr1:95676145-95676316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               25, 39
               

               Conread position:
               443-652
               

               Cow position:
               chr1:8347269-8347051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               443-652
               

               Cow position:
               chr1:52995172-52994948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               443-662
               

               Cow position:
               chr1:5580201-5579971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               14, 55
               

               Conread position:
               444-580
               

               Cow position:
               chr1:44835642-44835784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               61, 14
               

               Conread position:
               444-613
               

               Cow position:
               chr1:53308251-53308414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               444-652
               

               Cow position:
               chr1:48769944-48769731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               163, 18
               

               Conread position:
               444-659
               

               Cow position:
               chr1:39509915-39510134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               35, 20
               

               Conread position:
               444-662
               

               Cow position:
               chr1:39068813-39069038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               161, 11
               

               Conread position:
               444-662
               

               Cow position:
               chr1:90868302-90868524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               13, 44
               

               Conread position:
               444-690
               

               Cow position:
               chr1:47233335-47233590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               164, 14
               

               Conread position:
               444-701
               

               Cow position:
               chr1:97939100-97938847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               169, 15
               

               Conread position:
               445-603
               

               Cow position:
               chr1:45873928-45874093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               107, 13
               

               Conread position:
               445-612
               

               Cow position:
               chr1:81613532-81613365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               445-655
               

               Cow position:
               chr1:77133895-77133681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               166, 43
               

               Conread position:
               446-580
               

               Cow position:
               chr1:23055190-23055055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               446-690
               

               Cow position:
               chr1:100800493-100800245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               113, 35
               

               Conread position:
               447-599
               

               Cow position:
               chr1:64019381-64019532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               447-601
               

               Cow position:
               chr1:84203651-84203501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               447-655
               

               Cow position:
               chr1:48730693-48730904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               78, 11
               

               Conread position:
               447-659
               

               Cow position:
               chr1:93554976-93554759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               162, 7
               

               Conread position:
               447-661
               

               Cow position:
               chr1:80841786-80841570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               160, 11
               

               Conread position:
               447-690
               

               Cow position:
               chr1:98360262-98360509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               10, 88
               

               Conread position:
               448-611
               

               Cow position:
               chr1:72141710-72141554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               449-662
               

               Cow position:
               chr1:77683487-77683274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               8, 26
               

               Conread position:
               450-614
               

               Cow position:
               chr1:46765012-46764851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               450-652
               

               Cow position:
               chr1:97696882-97696670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               157, 92
               

               Conread position:
               451-615
               

               Cow position:
               chr1:84768741-84768904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               6, 158
               

               Conread position:
               451-659
               

               Cow position:
               chr1:98594703-98594493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               6, 122
               

               Conread position:
               451-662
               

               Cow position:
               chr1:36932293-36932074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               6, 57
               

               Conread position:
               452-661
               

               Cow position:
               chr1:67688447-67688662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               164, 75
               

               Conread position:
               454-566
               

               Cow position:
               chr1:42353292-42353183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               92
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               454-573
               

               Cow position:
               chr1:63905123-63905244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               95
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               454-573
               

               Cow position:
               chr1:81638683-81638563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               96
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               454-662
               

               Cow position:
               chr1:90595436-90595636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               120, 113
               

               Conread position:
               454-690
               

               Cow position:
               chr1:93528835-93528587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               75, 110
               

               Conread position:
               456-641
               

               Cow position:
               chr1:82942414-82942225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               456-641
               

               Cow position:
               chr1:82944144-82944333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               458-568
               

               Cow position:
               chr1:1875517-1875405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               93
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               458-580
               

               Cow position:
               chr1:19997845-19997964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               99
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               458-588
               

               Cow position:
               chr1:45283324-45283194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               100
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               458-604
               

               Cow position:
               chr1:56711471-56711615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               19, 97
               

               Conread position:
               458-605
               

               Cow position:
               chr1:69481820-69481965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               458-606
               

               Cow position:
               chr1:42360418-42360268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               458-607
               

               Cow position:
               chr1:7023251-7023102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               458-608
               

               Cow position:
               chr1:22035741-22035592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               458-613
               

               Cow position:
               chr1:52039766-52039614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               458-652
               

               Cow position:
               chr1:11729305-11729109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               458-652
               

               Cow position:
               chr1:49839614-49839433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               458-659
               

               Cow position:
               chr1:74822581-74822370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               458-661
               

               Cow position:
               chr1:25281527-25281742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               458-662
               

               Cow position:
               chr1:4291294-4291077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               148, 90
               

               Conread position:
               458-662
               

               Cow position:
               chr1:54732360-54732551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               134, 16
               

               Conread position:
               458-662
               

               Cow position:
               chr1:56477722-56477504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               134, 130
               

               Conread position:
               458-662
               

               Cow position:
               chr1:57420606-57420810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               148, 46
               

               Conread position:
               458-689
               

               Cow position:
               chr1:21787466-21787219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               150, 179
               

               Conread position:
               458-690
               

               Cow position:
               chr1:80422402-80422169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               140, 95
               

               Conread position:
               458-690
               

               Cow position:
               chr1:91874787-91875020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               143, 61
               

               Conread position:
               459-574
               

               Cow position:
               chr1:84288531-84288417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               459-595
               

               Cow position:
               chr1:89509794-89509928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               459-602
               

               Cow position:
               chr1:73936015-73936159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               459-603
               

               Cow position:
               chr1:61011310-61011166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               459-606
               

               Cow position:
               chr1:95974528-95974382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               459-607
               

               Cow position:
               chr1:54157425-54157275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               459-611
               

               Cow position:
               chr1:31256097-31256244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               459-612
               

               Cow position:
               chr1:7740076-7739924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               459-615
               

               Cow position:
               chr1:45478734-45478886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               459-652
               

               Cow position:
               chr1:98583882-98583685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               459-655
               

               Cow position:
               chr1:94261664-94261463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               125, 32
               

               Conread position:
               459-662
               

               Cow position:
               chr1:95499366-95499577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               459-662
               

               Cow position:
               chr1:99609497-99609285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               137, 84
               

               Conread position:
               459-669
               

               Cow position:
               chr1:42868811-42869030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               147, 94
               

               Conread position:
               459-704
               

               Cow position:
               chr1:78697643-78697894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               134, 124
               

               Conread position:
               460-607
               

               Cow position:
               chr1:71915992-71916138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               460-613
               

               Cow position:
               chr1:36875154-36875004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               149, 91
               

               Conread position:
               460-614
               

               Cow position:
               chr1:39417987-39418136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               132, 37
               

               Conread position:
               460-652
               

               Cow position:
               chr1:68676490-68676289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               19, 114
               

               Conread position:
               460-691
               

               Cow position:
               chr1:3607932-3607698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               115, 216
               

               Conread position:
               461-583
               

               Cow position:
               chr1:43499170-43499291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               97
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               461-652
               

               Cow position:
               chr1:78838922-78838726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               136, 94
               

               Conread position:
               461-654
               

               Cow position:
               chr1:95177064-95176861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               143, 34
               

               Conread position:
               461-690
               

               Cow position:
               chr1:77720122-77720346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               192, 29
               

               Conread position:
               462-660
               

               Cow position:
               chr1:39224800-39225008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               155, 0
               

               Conread position:
               462-662
               

               Cow position:
               chr1:30417922-30418121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               109, 119
               

               Conread position:
               462-662
               

               Cow position:
               chr1:96472556-96472362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               151, 76
               

               Conread position:
               463-646
               

               Cow position:
               chr1:41252285-41252475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               147, 101
               

               Conread position:
               465-576
               

               Cow position:
               chr1:32787831-32787942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               93
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               59, 79
               

               Conread position:
               466-575
               

               Cow position:
               chr1:81179222-81179335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               94
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               53, 10
               

               Conread position:
               466-614
               

               Cow position:
               chr1:42178867-42178714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               466-662
               

               Cow position:
               chr1:8349202-8349398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               20, 75
               

               Conread position:
               466-662
               

               Cow position:
               chr1:41115597-41115798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               116, 83
               

               Conread position:
               466-662
               

               Cow position:
               chr1:87937019-87936816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               80, 35
               

               Conread position:
               467-607
               

               Cow position:
               chr1:65028653-65028515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               467-655
               

               Cow position:
               chr1:75142118-75141925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               140, 170
               

               Conread position:
               468-644
               

               Cow position:
               chr1:235642-235819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               130, 102
               

               Conread position:
               468-646
               

               Cow position:
               chr1:5135590-5135768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               145, 119
               

               Conread position:
               468-649
               

               Cow position:
               chr1:45223701-45223510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               469-652
               

               Cow position:
               chr1:19466170-19465984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               142, 25
               

               Conread position:
               469-662
               

               Cow position:
               chr1:100706245-100706050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               139, 91
               

               Conread position:
               470-632
               

               Cow position:
               chr1:42545661-42545823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               139, 148
               

               Conread position:
               471-662
               

               Cow position:
               chr1:93810546-93810346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               471-690
               

               Cow position:
               chr1:53425294-53425064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               82, 209
               

               Conread position:
               473-662
               

               Cow position:
               chr1:61542804-61543001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               135, 76
               

               Conread position:
               473-688
               

               Cow position:
               chr1:45288755-45288981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               11, 211
               

               Conread position:
               476-583
               

               Cow position:
               chr1:6989262-6989155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               90
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               476-645
               

               Cow position:
               chr1:66430403-66430233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               129, 88
               

               Conread position:
               476-652
               

               Cow position:
               chr1:37309407-37309585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               133
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               150, 0
               

               Conread position:
               476-662
               

               Cow position:
               chr1:95215078-95215264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               178, 132
               

               Conread position:
               477-612
               

               Cow position:
               chr1:5006272-5006138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               477-652
               

               Cow position:
               chr1:81868619-81868798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               128, 10
               

               Conread position:
               477-689
               

               Cow position:
               chr1:100324640-100324854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               108, 28
               

               Conread position:
               478-612
               

               Cow position:
               chr1:4581220-4581354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               102
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               478-638
               

               Cow position:
               chr1:30504611-30504443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               478-661
               

               Cow position:
               chr1:53452645-53452462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               127, 37
               

               Conread position:
               490-652
               

               Cow position:
               chr1:69540380-69540229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               490-662
               

               Cow position:
               chr1:46783410-46783236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               119, 61
               

               Conread position:
               490-690
               

               Cow position:
               chr1:40482315-40482514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               103, 15
               

               Conread position:
               491-662
               

               Cow position:
               chr1:55146895-55146719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               101, 36
               

               Conread position:
               492-662
               

               Cow position:
               chr1:51531847-51531684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               162, 62
               

               Conread position:
               495-662
               

               Cow position:
               chr1:92434093-92433917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               112, 93
               

               Conread position:
               495-662
               

               Cow position:
               chr1:92963488-92963312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               501-662
               

               Cow position:
               chr1:68951712-68951544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               105, 32
               

               Conread position:
               501-662
               

               Cow position:
               chr1:70026258-70026427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               501-662
               

               Cow position:
               chr1:101946627-101946793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               515-690
               

               Cow position:
               chr1:102647200-102647384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               95, 141
               

               Conread position:
               530-690
               

               Cow position:
               chr1:93228583-93228415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               79, 142
               
Show alignments to all cow chromosomes.
Conread position:	330-607
Cow position:	chr1:64803838-64804121 (view UCSC Genome Browser custom track)
Alignm length:	288
Alignm identity:	192
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	35, 14
Conread position:	337-662
Cow position:	chr1:31934756-31934429 (view UCSC Genome Browser custom track)
Alignm length:	339
Alignm identity:	228
Alignm E-value:	9e-31
Alignm gaps (pig, cow):	79, 115
Conread position:	347-566
Cow position:	chr1:45578786-45578561 (view UCSC Genome Browser custom track)
Alignm length:	229
Alignm identity:	162
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	29, 44
Conread position:	348-652
Cow position:	chr1:35162646-35162337 (view UCSC Genome Browser custom track)
Alignm length:	315
Alignm identity:	216
Alignm E-value:	5e-36
Alignm gaps (pig, cow):	91, 70
Conread position:	349-583
Cow position:	chr1:10716746-10716502 (view UCSC Genome Browser custom track)
Alignm length:	246
Alignm identity:	173
Alignm E-value:	8e-30
Alignm gaps (pig, cow):	16, 205
Conread position:	351-534
Cow position:	chr1:51469789-51469596 (view UCSC Genome Browser custom track)
Alignm length:	194
Alignm identity:	142
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	35, 0
Conread position:	351-550
Cow position:	chr1:53457050-53456849 (view UCSC Genome Browser custom track)
Alignm length:	210
Alignm identity:	150
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	65, 114
Conread position:	351-574
Cow position:	chr1:85339621-85339401 (view UCSC Genome Browser custom track)
Alignm length:	230
Alignm identity:	160
Alignm E-value:	1e-22
Alignm gaps (pig, cow):	8, 71
Conread position:	351-582
Cow position:	chr1:81477623-81477863 (view UCSC Genome Browser custom track)
Alignm length:	243
Alignm identity:	170
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	21, 118
Conread position:	351-596
Cow position:	chr1:1496289-1496540 (view UCSC Genome Browser custom track)
Alignm length:	256
Alignm identity:	175
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	13, 39
Conread position:	351-692
Cow position:	chr1:6304640-6304976 (view UCSC Genome Browser custom track)
Alignm length:	352
Alignm identity:	232
Alignm E-value:	5e-25
Alignm gaps (pig, cow):	243, 31
Conread position:	352-575
Cow position:	chr1:70416539-70416747 (view UCSC Genome Browser custom track)
Alignm length:	224
Alignm identity:	162
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	16, 0
Conread position:	352-607
Cow position:	chr1:11913644-11913898 (view UCSC Genome Browser custom track)
Alignm length:	262
Alignm identity:	176
Alignm E-value:	4e-23
Alignm gaps (pig, cow):	43, 8
Conread position:	352-615
Cow position:	chr1:72422168-72422433 (view UCSC Genome Browser custom track)
Alignm length:	274
Alignm identity:	192
Alignm E-value:	3e-30
Alignm gaps (pig, cow):	37, 98
Conread position:	353-585
Cow position:	chr1:70483100-70483331 (view UCSC Genome Browser custom track)
Alignm length:	242
Alignm identity:	176
Alignm E-value:	1e-31
Alignm gaps (pig, cow):	61, 25
Conread position:	353-690
Cow position:	chr1:73960923-73960594 (view UCSC Genome Browser custom track)
Alignm length:	348
Alignm identity:	235
Alignm E-value:	8e-30
Alignm gaps (pig, cow):	34, 91
Conread position:	354-610
Cow position:	chr1:49334155-49334414 (view UCSC Genome Browser custom track)
Alignm length:	269
Alignm identity:	186
Alignm E-value:	5e-25
Alignm gaps (pig, cow):	30, 111
Conread position:	355-660
Cow position:	chr1:18936604-18936910 (view UCSC Genome Browser custom track)
Alignm length:	316
Alignm identity:	210
Alignm E-value:	5e-25
Alignm gaps (pig, cow):	6, 23
Conread position:	356-605
Cow position:	chr1:97232203-97231943 (view UCSC Genome Browser custom track)
Alignm length:	262
Alignm identity:	186
Alignm E-value:	1e-32
Alignm gaps (pig, cow):	62, 33
Conread position:	356-615
Cow position:	chr1:97144238-97144492 (view UCSC Genome Browser custom track)
Alignm length:	263
Alignm identity:	177
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	112, 62