Cow genome map

Conread name: Ss1.1-rpgl18_p2.5

Conread position: 334-662
Cow position: chr24:27906662-27906324 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 238
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 8, 24

Conread position: 341-667
Cow position: chr24:11840399-11840070 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 232
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 94, 20

Conread position: 344-563
Cow position: chr24:40025166-40025382 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 72, 45

Conread position: 345-612
Cow position: chr24:11028477-11028738 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 71, 5

Conread position: 348-567
Cow position: chr24:25142819-25142600 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 147
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 56

Conread position: 351-662
Cow position: chr24:16645121-16645437 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 217
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 39

Conread position: 352-662
Cow position: chr24:352396-352719 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 217
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 97

Conread position: 352-662
Cow position: chr24:35150740-35150408 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 91, 217

Conread position: 354-607
Cow position: chr24:19624055-19623807 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 168
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 42

Conread position: 356-573
Cow position: chr24:36286773-36286554 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 23, 110

Conread position: 356-662
Cow position: chr24:27149588-27149282 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 208
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 107

Conread position: 357-631
Cow position: chr24:34465292-34465575 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 260

Conread position: 357-662
Cow position: chr24:32054848-32054546 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 99

Conread position: 357-665
Cow position: chr24:18615218-18614883 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 59, 160

Conread position: 357-690
Cow position: chr24:5142141-5141802 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 230
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 15, 102

Conread position: 358-662
Cow position: chr24:15861389-15861714 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 26, 107

Conread position: 360-662
Cow position: chr24:22647138-22647451 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 17

Conread position: 361-553
Cow position: chr24:24091136-24091335 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 55, 117

Conread position: 361-566
Cow position: chr24:43499856-43499650 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 89

Conread position: 361-575
Cow position: chr24:17689412-17689628 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 28, 89

Conread position: 361-580
Cow position: chr24:19779143-19779374 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 53, 21

Conread position: 361-581
Cow position: chr24:18328263-18328495 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 54, 6

Conread position: 361-646
Cow position: chr24:39910833-39911134 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 208
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 55, 103

Conread position: 361-655
Cow position: chr24:6103024-6102719 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 214
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 41, 27

Conread position: 361-662
Cow position: chr24:27267810-27267520 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 20, 69

Conread position: 362-607
Cow position: chr24:13948318-13948074 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 27

Conread position: 362-662
Cow position: chr24:39523254-39523561 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 235
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 10, 27

Conread position: 363-662
Cow position: chr24:30483748-30484064 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 213
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 55

Conread position: 364-595
Cow position: chr24:30236067-30235836 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 100

Conread position: 364-662
Cow position: chr24:18484796-18485111 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 235
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 31, 105

Conread position: 365-590
Cow position: chr24:358564-358334 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 46, 99

Conread position: 365-595
Cow position: chr24:22133358-22133134 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 39, 22

Conread position: 365-605
Cow position: chr24:3166013-3165771 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 51, 43

Conread position: 365-662
Cow position: chr24:36711379-36711087 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 203
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 123, 24

Conread position: 366-578
Cow position: chr24:43024473-43024240 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 48, 16

Conread position: 367-566
Cow position: chr24:25970892-25971082 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 367-571
Cow position: chr24:39960818-39961011 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 22, 0

Conread position: 368-583
Cow position: chr24:3412872-3412658 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 57, 88

Conread position: 368-607
Cow position: chr24:230471-230229 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 48, 75

Conread position: 368-611
Cow position: chr24:28510981-28510744 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 21

Conread position: 368-612
Cow position: chr24:7390142-7390387 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 63, 41

Conread position: 368-651
Cow position: chr24:34533328-34533026 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 45, 243

Conread position: 369-547
Cow position: chr24:10840714-10840909 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 369-614
Cow position: chr24:11887341-11887104 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 18

Conread position: 369-638
Cow position: chr24:6151965-6151705 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 219, 18

Conread position: 369-652
Cow position: chr24:10300263-10299978 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 47, 13

Conread position: 369-652
Cow position: chr24:19187122-19186853 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 54, 49

Conread position: 370-612
Cow position: chr24:27844344-27844582 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 176
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 46, 73

Conread position: 370-661
Cow position: chr24:28234228-28233936 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 209
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 43, 11

Conread position: 371-575
Cow position: chr24:26848553-26848750 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 156, 73

Conread position: 371-615
Cow position: chr24:2992692-2992938 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 186
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 42, 92

Conread position: 371-659
Cow position: chr24:16089417-16089120 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 44, 90

Conread position: 372-583
Cow position: chr24:27553287-27553069 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 41, 58

Conread position: 373-606
Cow position: chr24:18750896-18750656 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 176
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 43, 76

Conread position: 373-613
Cow position: chr24:27607925-27608153 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 67

Conread position: 373-652
Cow position: chr24:30229660-30229368 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 206
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 43, 112

Conread position: 373-662
Cow position: chr24:31159816-31159503 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 40, 196

Conread position: 375-659
Cow position: chr24:3494065-3493776 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 41, 50

Conread position: 377-661
Cow position: chr24:17104390-17104685 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 214
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 70

Conread position: 378-575
Cow position: chr24:36485606-36485820 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 37, 0

Conread position: 378-575
Cow position: chr24:40055331-40055528 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 83

Conread position: 378-580
Cow position: chr24:5152707-5152501 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 88

Conread position: 378-580
Cow position: chr24:37453328-37453526 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 23

Conread position: 378-594
Cow position: chr24:10499399-10499178 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 34, 95

Conread position: 378-595
Cow position: chr24:20364235-20364447 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 81

Conread position: 378-607
Cow position: chr24:27285005-27284772 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 36, 171

Conread position: 378-612
Cow position: chr24:18313736-18313994 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 38, 237

Conread position: 378-647
Cow position: chr24:34390452-34390187 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 38, 51

Conread position: 378-662
Cow position: chr24:12851876-12851602 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 79, 31

Conread position: 378-662
Cow position: chr24:16895243-16895550 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 221
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 14, 41

Conread position: 378-662
Cow position: chr24:37395026-37395323 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 221
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 33, 70

Conread position: 378-662
Cow position: chr24:42103542-42103262 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 209
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 71

Conread position: 379-575
Cow position: chr24:28024447-28024262 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 18, 40

Conread position: 379-596
Cow position: chr24:18668763-18668540 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 18, 90

Conread position: 379-612
Cow position: chr24:27713230-27713459 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 158
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 45, 77

Conread position: 379-612
Cow position: chr24:30313849-30314080 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 160
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 65

Conread position: 379-615
Cow position: chr24:27202250-27202031 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 233, 25

Conread position: 379-662
Cow position: chr24:28690866-28690574 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 216
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 33, 167

Conread position: 379-662
Cow position: chr24:29595620-29595924 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 37, 120

Conread position: 382-583
Cow position: chr24:29539751-29539954 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 91

Conread position: 382-605
Cow position: chr24:29605856-29606080 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 32, 56

Conread position: 382-607
Cow position: chr24:28600261-28600485 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 68

Conread position: 382-614
Cow position: chr24:28355527-28355742 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 382-648
Cow position: chr24:34742926-34742653 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 63

Conread position: 382-651
Cow position: chr24:28553395-28553654 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 193
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 45, 58

Conread position: 382-660
Cow position: chr24:20225921-20225634 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 172

Conread position: 382-662
Cow position: chr24:2402200-2402482 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 34, 78

Conread position: 382-662
Cow position: chr24:24457065-24457359 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 113

Conread position: 382-667
Cow position: chr24:11119471-11119167 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 34, 114

Conread position: 382-678
Cow position: chr24:38006535-38006836 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 220
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 29, 86

Conread position: 383-607
Cow position: chr24:34896525-34896747 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 38, 57

Conread position: 383-613
Cow position: chr24:34272995-34272754 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 164
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 219

Conread position: 383-645
Cow position: chr24:37823700-37823432 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 181
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 35

Conread position: 383-652
Cow position: chr24:41406070-41405794 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 383-660
Cow position: chr24:16510147-16509859 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 24

Conread position: 383-662
Cow position: chr24:28722054-28721777 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 7, 36

Conread position: 384-659
Cow position: chr24:28289057-28289360 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 30, 120

Conread position: 384-661
Cow position: chr24:27874748-27874489 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 194
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 230, 34

Conread position: 384-662
Cow position: chr24:16995053-16994774 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 48

Conread position: 384-662
Cow position: chr24:32739088-32739383 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 29, 125

Conread position: 385-552
Cow position: chr24:15340291-15340449 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 386-586
Cow position: chr24:41565938-41566123 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 387-583
Cow position: chr24:37650847-37650649 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 66

Conread position: 387-583
Cow position: chr24:39218380-39218578 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 155
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 70, 0

Conread position: 387-612
Cow position: chr24:42726630-42726394 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 26, 0

Conread position: 387-690
Cow position: chr24:17832657-17832955 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 169, 68

Conread position: 388-662
Cow position: chr24:33944577-33944289 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 210
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 28, 37

Conread position: 396-563
Cow position: chr24:27782381-27782210 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 396-662
Cow position: chr24:18331898-18331610 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 47, 210

Conread position: 401-612
Cow position: chr24:8676973-8676768 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 207, 11

Conread position: 409-662
Cow position: chr24:2675456-2675208 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 179
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 196, 19

Conread position: 412-574
Cow position: chr24:7113371-7113206 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 45, 91

Conread position: 412-593
Cow position: chr24:28990700-28990526 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 412-595
Cow position: chr24:31816715-31816541 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 412-603
Cow position: chr24:44987234-44987420 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 412-607
Cow position: chr24:28470527-28470729 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 33, 0

Conread position: 412-608
Cow position: chr24:19637724-19637533 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 95, 28

Conread position: 412-612
Cow position: chr24:33098334-33098527 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 180, 31

Conread position: 412-615
Cow position: chr24:40404657-40404865 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 45, 101

Conread position: 412-630
Cow position: chr24:18810972-18810762 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 148
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 412-654
Cow position: chr24:20943298-20943062 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 194, 46

Conread position: 412-662
Cow position: chr24:35632119-35631873 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 126, 32

Conread position: 412-662
Cow position: chr24:40130276-40130013 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 183
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 412-690
Cow position: chr24:17751970-17752255 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 198
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 186, 45

Conread position: 412-690
Cow position: chr24:27052344-27052636 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 62, 16

Conread position: 413-607
Cow position: chr24:20874817-20874633 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 413-662
Cow position: chr24:19535116-19535365 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 177
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 195, 42

Conread position: 413-662
Cow position: chr24:32204647-32204908 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 44, 181

Conread position: 414-580
Cow position: chr24:30202968-30202802 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 21

Conread position: 414-690
Cow position: chr24:31359454-31359184 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 196
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 195, 29

Conread position: 418-678
Cow position: chr24:27725879-27726145 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 197
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 166, 25

Conread position: 419-612
Cow position: chr24:6912224-6912418 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 422-609
Cow position: chr24:15347719-15347538 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 87, 16

Conread position: 424-652
Cow position: chr24:18741439-18741673 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 34

Conread position: 426-652
Cow position: chr24:19769630-19769385 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 32, 0

Conread position: 434-652
Cow position: chr24:33465497-33465715 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 23, 52

Conread position: 434-661
Cow position: chr24:39791665-39791426 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 23, 44

Conread position: 434-662
Cow position: chr24:18970386-18970621 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 132, 29

Conread position: 435-586
Cow position: chr24:14786507-14786351 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 443-573
Cow position: chr24:22235583-22235452 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 443-607
Cow position: chr24:8006420-8006260 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 443-607
Cow position: chr24:28326964-28327128 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 113

Conread position: 443-612
Cow position: chr24:28319094-28319263 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 6, 35

Conread position: 443-633
Cow position: chr24:16118478-16118281 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 443-644
Cow position: chr24:41068375-41068170 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 48, 91

Conread position: 443-662
Cow position: chr24:18390185-18390402 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 14, 116

Conread position: 443-662
Cow position: chr24:24662015-24662244 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 0

Conread position: 443-662
Cow position: chr24:32071077-32070852 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 11, 106

Conread position: 444-567
Cow position: chr24:35029948-35030070 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 444-662
Cow position: chr24:14648246-14648464 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 168, 14

Conread position: 444-662
Cow position: chr24:34008460-34008690 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 162, 14

Conread position: 445-628
Cow position: chr24:40983237-40983063 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 445-662
Cow position: chr24:43364478-43364246 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 101

Conread position: 446-652
Cow position: chr24:27290982-27290768 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 156, 11

Conread position: 446-662
Cow position: chr24:29673631-29673406 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 163, 13

Conread position: 447-662
Cow position: chr24:15373517-15373295 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 172
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 10, 215

Conread position: 448-650
Cow position: chr24:29679204-29679410 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 9

Conread position: 448-659
Cow position: chr24:29063549-29063764 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 149, 92

Conread position: 453-595
Cow position: chr24:15246540-15246680 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 454-607
Cow position: chr24:24490914-24491066 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 454-641
Cow position: chr24:27748745-27748553 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 170

Conread position: 454-662
Cow position: chr24:41423707-41423495 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 97, 140

Conread position: 456-650
Cow position: chr24:29171061-29170868 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 147, 19

Conread position: 456-688
Cow position: chr24:39905347-39905589 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 68, 10

Conread position: 458-566
Cow position: chr24:256126-256018 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 458-573
Cow position: chr24:32818204-32818315 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 458-585
Cow position: chr24:5754935-5754809 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 458-594
Cow position: chr24:32890944-32891080 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 458-595
Cow position: chr24:33244494-33244359 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 458-613
Cow position: chr24:29984885-29985040 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 143, 19

Conread position: 458-660
Cow position: chr24:42825405-42825606 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 148, 85

Conread position: 458-662
Cow position: chr24:16895038-16895244 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 9, 28

Conread position: 458-662
Cow position: chr24:17955345-17955555 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 149, 88

Conread position: 459-596
Cow position: chr24:20807633-20807497 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 459-600
Cow position: chr24:29561474-29561615 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 459-604
Cow position: chr24:20969566-20969708 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 459-607
Cow position: chr24:11007556-11007411 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 95

Conread position: 460-604
Cow position: chr24:23000112-22999971 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 94

Conread position: 460-652
Cow position: chr24:38841324-38841512 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 93, 0

Conread position: 460-690
Cow position: chr24:23694803-23695035 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 59, 159

Conread position: 465-662
Cow position: chr24:32369823-32370032 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 103, 11

Conread position: 466-607
Cow position: chr24:16268037-16268176 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 99, 0

Conread position: 466-607
Cow position: chr24:43832622-43832480 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 124

Conread position: 466-612
Cow position: chr24:28043066-28042921 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 466-654
Cow position: chr24:34496216-34496013 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 469-612
Cow position: chr24:27824550-27824408 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 469-638
Cow position: chr24:17375727-17375560 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 139, 0

Conread position: 469-662
Cow position: chr24:29389323-29389127 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 52, 139

Conread position: 477-607
Cow position: chr24:34556115-34555987 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 477-644
Cow position: chr24:7046669-7046843 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 129, 75

Conread position: 477-661
Cow position: chr24:31324365-31324169 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 132, 31

Conread position: 478-659
Cow position: chr24:8886990-8886800 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 100, 0

Conread position: 479-659
Cow position: chr24:19261299-19261476 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 481-652
Cow position: chr24:19736257-19736438 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 122, 0

Conread position: 481-660
Cow position: chr24:18374845-18374666 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 44, 36

Conread position: 490-662
Cow position: chr24:18355276-18355110 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 164, 98

Conread position: 495-662
Cow position: chr24:43432853-43432679 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 112, 76

Conread position: 501-655
Cow position: chr24:6957553-6957397 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 108, 43

Conread position: 501-662
Cow position: chr24:42364292-42364132 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 154, 107

Conread position: 502-652
Cow position: chr24:21895105-21894945 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 104, 28

Conread position: 507-662
Cow position: chr24:25092572-25092419 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 148, 37

Conread position: 524-652
Cow position: chr24:10012786-10012656 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 89, 0

Show alignments to all cow chromosomes.