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Cow genome map

           
Conread name:
           
Ss1.1-rpgl18_p2.5
        

               
Conread position:
               
38-662
               

               
Cow position:
               
chr27:714914-715548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
567, 452
               

               
Conread position:
               
337-613
               

               
Cow position:
               
chr27:5553187-5553456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
121, 11
               

               
Conread position:
               
338-662
               

               
Cow position:
               
chr27:15315236-15315551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
341-497
               

               
Cow position:
               
chr27:7058101-7058255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 17
               

               
Conread position:
               
344-583
               

               
Cow position:
               
chr27:22180049-22179812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 39
               

               
Conread position:
               
344-660
               

               
Cow position:
               
chr27:20869971-20869648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 122
               

               
Conread position:
               
349-558
               

               
Cow position:
               
chr27:23495973-23495777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
351-580
               

               
Cow position:
               
chr27:27529092-27528865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 115
               

               
Conread position:
               
352-612
               

               
Cow position:
               
chr27:20828981-20828724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
353-575
               

               
Cow position:
               
chr27:26236056-26236275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 109
               

               
Conread position:
               
353-593
               

               
Cow position:
               
chr27:19452738-19452969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
353-662
               

               
Cow position:
               
chr27:15865953-15866262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
356-605
               

               
Cow position:
               
chr27:20749272-20749035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
356-615
               

               
Cow position:
               
chr27:11480911-11480646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 89
               

               
Conread position:
               
356-662
               

               
Cow position:
               
chr27:30914734-30915053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
16, 5
               

               
Conread position:
               
357-610
               

               
Cow position:
               
chr27:17397723-17397470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
12, 89
               

               
Conread position:
               
357-611
               

               
Cow position:
               
chr27:23560288-23560046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
357-647
               

               
Cow position:
               
chr27:24303672-24303969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
357-662
               

               
Cow position:
               
chr27:1353312-1353633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
360-582
               

               
Cow position:
               
chr27:591026-590806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
360-583
               

               
Cow position:
               
chr27:19576578-19576366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
360-604
               

               
Cow position:
               
chr27:18435386-18435155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
360-605
               

               
Cow position:
               
chr27:20485778-20486037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
56, 168
               

               
Conread position:
               
360-662
               

               
Cow position:
               
chr27:6924830-6925135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
147, 36
               

               
Conread position:
               
360-662
               

               
Cow position:
               
chr27:13251764-13252052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 89
               

               
Conread position:
               
361-555
               

               
Cow position:
               
chr27:22748063-22748257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 7
               

               
Conread position:
               
361-583
               

               
Cow position:
               
chr27:26400987-26400764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
361-637
               

               
Cow position:
               
chr27:11561510-11561796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
361-652
               

               
Cow position:
               
chr27:7649855-7649549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
55, 21
               

               
Conread position:
               
361-661
               

               
Cow position:
               
chr27:26481463-26481167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
55, 92
               

               
Conread position:
               
361-662
               

               
Cow position:
               
chr27:6550196-6550503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
53, 20
               

               
Conread position:
               
361-662
               

               
Cow position:
               
chr27:20514558-20514867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
28, 87
               

               
Conread position:
               
361-662
               

               
Cow position:
               
chr27:22560091-22559778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
362-575
               

               
Cow position:
               
chr27:18791779-18791560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 90
               

               
Conread position:
               
362-583
               

               
Cow position:
               
chr27:4720391-4720158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
53, 196
               

               
Conread position:
               
363-579
               

               
Cow position:
               
chr27:11133824-11134039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
48, 101
               

               
Conread position:
               
364-662
               

               
Cow position:
               
chr27:28922158-28921851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
52, 88
               

               
Conread position:
               
365-615
               

               
Cow position:
               
chr27:7343688-7343439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
366-583
               

               
Cow position:
               
chr27:27531863-27532097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
366-659
               

               
Cow position:
               
chr27:20812664-20812953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
239, 16
               

               
Conread position:
               
366-660
               

               
Cow position:
               
chr27:20283382-20283686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
21, 88
               

               
Conread position:
               
366-690
               

               
Cow position:
               
chr27:19387760-19388088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
50, 98
               

               
Conread position:
               
367-612
               

               
Cow position:
               
chr27:15453955-15454194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
367-662
               

               
Cow position:
               
chr27:4390506-4390209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
193, 35
               

               
Conread position:
               
367-662
               

               
Cow position:
               
chr27:26087059-26087340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
368-560
               

               
Cow position:
               
chr27:21951241-21951044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 97
               

               
Conread position:
               
368-568
               

               
Cow position:
               
chr27:18491308-18491498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
368-574
               

               
Cow position:
               
chr27:24356780-24356986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
46, 103
               

               
Conread position:
               
368-595
               

               
Cow position:
               
chr27:426722-426938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
368-611
               

               
Cow position:
               
chr27:15867133-15867381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
368-611
               

               
Cow position:
               
chr27:19546780-19546529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
45, 120
               

               
Conread position:
               
368-662
               

               
Cow position:
               
chr27:11435586-11435276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
46, 98
               

               
Conread position:
               
368-662
               

               
Cow position:
               
chr27:20628801-20629106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
368-662
               

               
Cow position:
               
chr27:26226545-26226244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 20
               

               
Conread position:
               
368-704
               

               
Cow position:
               
chr27:23632350-23632683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
241, 74
               

               
Conread position:
               
369-561
               

               
Cow position:
               
chr27:17908510-17908324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
369-580
               

               
Cow position:
               
chr27:29236300-29236518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
369-591
               

               
Cow position:
               
chr27:20548563-20548775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
369-606
               

               
Cow position:
               
chr27:4944764-4944534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
215, 45
               

               
Conread position:
               
369-611
               

               
Cow position:
               
chr27:23484958-23485195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
369-612
               

               
Cow position:
               
chr27:31210292-31210532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 95
               

               
Conread position:
               
369-660
               

               
Cow position:
               
chr27:7935413-7935114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
369-662
               

               
Cow position:
               
chr27:2592279-2592594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
369-690
               

               
Cow position:
               
chr27:16088532-16088883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
370-543
               

               
Cow position:
               
chr27:25000223-25000043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
370-550
               

               
Cow position:
               
chr27:15434076-15434249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
370-553
               

               
Cow position:
               
chr27:30884772-30884955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
370-572
               

               
Cow position:
               
chr27:26118251-26118446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
370-607
               

               
Cow position:
               
chr27:23594063-23594302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
370-651
               

               
Cow position:
               
chr27:28290585-28290881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
44, 197
               

               
Conread position:
               
370-661
               

               
Cow position:
               
chr27:27020354-27020058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 90
               

               
Conread position:
               
371-569
               

               
Cow position:
               
chr27:28039096-28038901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
86, 25
               

               
Conread position:
               
371-570
               

               
Cow position:
               
chr27:18752589-18752800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 156
               

               
Conread position:
               
371-596
               

               
Cow position:
               
chr27:6106450-6106670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 70
               

               
Conread position:
               
371-615
               

               
Cow position:
               
chr27:20584721-20584466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
371-630
               

               
Cow position:
               
chr27:29319148-29319413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
371-662
               

               
Cow position:
               
chr27:15925090-15925387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
20, 92
               

               
Conread position:
               
371-662
               

               
Cow position:
               
chr27:20354355-20354630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
241, 36
               

               
Conread position:
               
372-613
               

               
Cow position:
               
chr27:30618050-30617803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
18, 177
               

               
Conread position:
               
373-575
               

               
Cow position:
               
chr27:13801549-13801758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
373-662
               

               
Cow position:
               
chr27:25809770-25809477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 89
               

               
Conread position:
               
375-610
               

               
Cow position:
               
chr27:15378734-15378495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
378-555
               

               
Cow position:
               
chr27:31183324-31183505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
378-557
               

               
Cow position:
               
chr27:27606543-27606365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
36, 87
               

               
Conread position:
               
378-662
               

               
Cow position:
               
chr27:2957168-2957447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
378-662
               

               
Cow position:
               
chr27:23735720-23736006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
45, 40
               

               
Conread position:
               
378-662
               

               
Cow position:
               
chr27:23890695-23890985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
227, 39
               

               
Conread position:
               
379-551
               

               
Cow position:
               
chr27:11528681-11528856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 64
               

               
Conread position:
               
379-595
               

               
Cow position:
               
chr27:12710004-12710218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
13, 31
               

               
Conread position:
               
379-605
               

               
Cow position:
               
chr27:29388424-29388651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 46
               

               
Conread position:
               
379-607
               

               
Cow position:
               
chr27:28206556-28206780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
379-662
               

               
Cow position:
               
chr27:8062599-8062308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
379-662
               

               
Cow position:
               
chr27:10979612-10979909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
379-662
               

               
Cow position:
               
chr27:30868999-30868694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
380-607
               

               
Cow position:
               
chr27:15669021-15668790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
36, 86
               

               
Conread position:
               
382-565
               

               
Cow position:
               
chr27:6058046-6058239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
382-575
               

               
Cow position:
               
chr27:1184419-1184228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 69
               

               
Conread position:
               
382-602
               

               
Cow position:
               
chr27:212706-212933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
30, 85
               

               
Conread position:
               
382-603
               

               
Cow position:
               
chr27:9977441-9977662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 52
               

               
Conread position:
               
382-612
               

               
Cow position:
               
chr27:8790987-8790755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
31, 57
               

               
Conread position:
               
382-642
               

               
Cow position:
               
chr27:31386875-31386613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
382-646
               

               
Cow position:
               
chr27:7412149-7412414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
43, 49
               

               
Conread position:
               
382-662
               

               
Cow position:
               
chr27:22220305-22220602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 69
               

               
Conread position:
               
382-690
               

               
Cow position:
               
chr27:8630119-8629799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
383-587
               

               
Cow position:
               
chr27:13903162-13902955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
383-613
               

               
Cow position:
               
chr27:19508768-19508999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
383-648
               

               
Cow position:
               
chr27:26794028-26793757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
383-690
               

               
Cow position:
               
chr27:29494142-29493838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 58
               

               
Conread position:
               
384-559
               

               
Cow position:
               
chr27:7847483-7847653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
149, 57
               

               
Conread position:
               
384-601
               

               
Cow position:
               
chr27:24223712-24223930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
384-607
               

               
Cow position:
               
chr27:23147921-23148147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
384-610
               

               
Cow position:
               
chr27:23510732-23510971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 103
               

               
Conread position:
               
384-636
               

               
Cow position:
               
chr27:15003222-15002968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
384-661
               

               
Cow position:
               
chr27:10307546-10307259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 77
               

               
Conread position:
               
384-661
               

               
Cow position:
               
chr27:23452220-23452504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
384-662
               

               
Cow position:
               
chr27:28260762-28260493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
225, 27
               

               
Conread position:
               
385-586
               

               
Cow position:
               
chr27:19717656-19717875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
385-612
               

               
Cow position:
               
chr27:6319692-6319905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
385-653
               

               
Cow position:
               
chr27:13255035-13254767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
386-563
               

               
Cow position:
               
chr27:24240122-24240296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
387-586
               

               
Cow position:
               
chr27:17102660-17102856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
387-602
               

               
Cow position:
               
chr27:26323202-26323421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
387-614
               

               
Cow position:
               
chr27:11994108-11993880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
387-652
               

               
Cow position:
               
chr27:29593868-29593593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
387-654
               

               
Cow position:
               
chr27:22455022-22454741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
63, 15
               

               
Conread position:
               
401-614
               

               
Cow position:
               
chr27:1768843-1768637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
407-662
               

               
Cow position:
               
chr27:7973964-7974220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
129, 10
               

               
Conread position:
               
412-579
               

               
Cow position:
               
chr27:22268014-22268178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
45, 142
               

               
Conread position:
               
412-607
               

               
Cow position:
               
chr27:17331286-17331477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
412-607
               

               
Cow position:
               
chr27:26121552-26121741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
412-607
               

               
Cow position:
               
chr27:26437326-26437140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
412-612
               

               
Cow position:
               
chr27:26112124-26111928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
112, 43
               

               
Conread position:
               
412-614
               

               
Cow position:
               
chr27:30764827-30765018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
181, 43
               

               
Conread position:
               
412-615
               

               
Cow position:
               
chr27:13318183-13317985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 43
               

               
Conread position:
               
412-638
               

               
Cow position:
               
chr27:25151883-25152103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
193, 31
               

               
Conread position:
               
412-649
               

               
Cow position:
               
chr27:19932860-19933097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
171, 28
               

               
Conread position:
               
412-652
               

               
Cow position:
               
chr27:16705047-16705287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
191, 33
               

               
Conread position:
               
412-654
               

               
Cow position:
               
chr27:22735800-22735564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
74, 45
               

               
Conread position:
               
412-659
               

               
Cow position:
               
chr27:28518087-28518337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
110, 43
               

               
Conread position:
               
412-661
               

               
Cow position:
               
chr27:26852788-26852547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
412-662
               

               
Cow position:
               
chr27:18507441-18507688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
95, 52
               

               
Conread position:
               
412-662
               

               
Cow position:
               
chr27:22489066-22489324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
194, 45
               

               
Conread position:
               
412-690
               

               
Cow position:
               
chr27:7959037-7958767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
181, 28
               

               
Conread position:
               
412-690
               

               
Cow position:
               
chr27:19660722-19661009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
173, 28
               

               
Conread position:
               
413-592
               

               
Cow position:
               
chr27:232346-232520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
413-613
               

               
Cow position:
               
chr27:6674063-6674265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 136
               

               
Conread position:
               
413-613
               

               
Cow position:
               
chr27:26188622-26188816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
413-652
               

               
Cow position:
               
chr27:29693262-29693502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
29, 188
               

               
Conread position:
               
413-655
               

               
Cow position:
               
chr27:29831913-29831660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
413-661
               

               
Cow position:
               
chr27:18558153-18558404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
95, 26
               

               
Conread position:
               
413-662
               

               
Cow position:
               
chr27:13639192-13638948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
169, 44
               

               
Conread position:
               
413-662
               

               
Cow position:
               
chr27:16965370-16965619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
116, 27
               

               
Conread position:
               
414-660
               

               
Cow position:
               
chr27:29185049-29184794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
46, 65
               

               
Conread position:
               
415-588
               

               
Cow position:
               
chr27:27551159-27550991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
424-655
               

               
Cow position:
               
chr27:30261089-30260851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
424-662
               

               
Cow position:
               
chr27:22602983-22603216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
35, 125
               

               
Conread position:
               
430-612
               

               
Cow position:
               
chr27:24305243-24305420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
432-654
               

               
Cow position:
               
chr27:27064632-27064403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
174, 23
               

               
Conread position:
               
434-574
               

               
Cow position:
               
chr27:29658907-29658767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
23, 83
               

               
Conread position:
               
434-660
               

               
Cow position:
               
chr27:16589895-16589671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
434-662
               

               
Cow position:
               
chr27:22723887-22723659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 166
               

               
Conread position:
               
434-662
               

               
Cow position:
               
chr27:30988605-30988842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 110
               

               
Conread position:
               
435-697
               

               
Cow position:
               
chr27:27039029-27038760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
13, 119
               

               
Conread position:
               
436-662
               

               
Cow position:
               
chr27:12191667-12191444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
218, 30
               

               
Conread position:
               
440-662
               

               
Cow position:
               
chr27:31018012-31017788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 140
               

               
Conread position:
               
441-614
               

               
Cow position:
               
chr27:26090494-26090323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
443-575
               

               
Cow position:
               
chr27:16237445-16237576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
443-580
               

               
Cow position:
               
chr27:20543538-20543674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
443-586
               

               
Cow position:
               
chr27:27255804-27255948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
443-595
               

               
Cow position:
               
chr27:788978-788828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
443-604
               

               
Cow position:
               
chr27:27270725-27270563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
443-620
               

               
Cow position:
               
chr27:30908490-30908666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
443-623
               

               
Cow position:
               
chr27:30489594-30489413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
14, 177
               

               
Conread position:
               
443-652
               

               
Cow position:
               
chr27:20795609-20795828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 104
               

               
Conread position:
               
443-660
               

               
Cow position:
               
chr27:28245618-28245844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 185
               

               
Conread position:
               
443-662
               

               
Cow position:
               
chr27:4155818-4156048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
164, 33
               

               
Conread position:
               
443-662
               

               
Cow position:
               
chr27:8942872-8942637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
443-662
               

               
Cow position:
               
chr27:15642991-15643217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 76
               

               
Conread position:
               
443-662
               

               
Cow position:
               
chr27:30359223-30359451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
444-604
               

               
Cow position:
               
chr27:6302650-6302490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
13, 85
               

               
Conread position:
               
444-651
               

               
Cow position:
               
chr27:18923015-18922796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
444-652
               

               
Cow position:
               
chr27:28035030-28034825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
444-662
               

               
Cow position:
               
chr27:4386242-4386015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
152, 16
               

               
Conread position:
               
445-662
               

               
Cow position:
               
chr27:22423337-22423555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
159, 13
               

               
Conread position:
               
447-603
               

               
Cow position:
               
chr27:7731433-7731280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
448-580
               

               
Cow position:
               
chr27:17918894-17918763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
448-607
               

               
Cow position:
               
chr27:27641189-27641031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
448-614
               

               
Cow position:
               
chr27:1789315-1789151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
448-654
               

               
Cow position:
               
chr27:17918490-17918278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
161, 12
               

               
Conread position:
               
451-622
               

               
Cow position:
               
chr27:27673191-27673016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 106
               

               
Conread position:
               
454-610
               

               
Cow position:
               
chr27:27055117-27055270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
455-616
               

               
Cow position:
               
chr27:16284306-16284465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
455-662
               

               
Cow position:
               
chr27:3306606-3306815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
151, 11
               

               
Conread position:
               
456-662
               

               
Cow position:
               
chr27:15215057-15215279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 128
               

               
Conread position:
               
458-662
               

               
Cow position:
               
chr27:1291016-1290804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
151, 15
               

               
Conread position:
               
458-662
               

               
Cow position:
               
chr27:25276976-25277183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
151, 18
               

               
Conread position:
               
458-662
               

               
Cow position:
               
chr27:26509321-26509115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
151, 58
               

               
Conread position:
               
459-662
               

               
Cow position:
               
chr27:22418932-22418721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
120, 18
               

               
Conread position:
               
459-662
               

               
Cow position:
               
chr27:31148595-31148807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
145, 28
               

               
Conread position:
               
459-665
               

               
Cow position:
               
chr27:6541465-6541677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
460-612
               

               
Cow position:
               
chr27:28478414-28478566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
461-614
               

               
Cow position:
               
chr27:21393671-21393519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
462-607
               

               
Cow position:
               
chr27:22245462-22245607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
462-612
               

               
Cow position:
               
chr27:24477253-24477402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
462-662
               

               
Cow position:
               
chr27:12596613-12596811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
120, 81
               

               
Conread position:
               
463-652
               

               
Cow position:
               
chr27:14303575-14303769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
101, 88
               

               
Conread position:
               
463-692
               

               
Cow position:
               
chr27:12246490-12246733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
5, 91
               

               
Conread position:
               
466-603
               

               
Cow position:
               
chr27:26920072-26919934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
466-607
               

               
Cow position:
               
chr27:29504807-29504668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
466-612
               

               
Cow position:
               
chr27:26413414-26413268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
466-613
               

               
Cow position:
               
chr27:21453254-21453107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
466-650
               

               
Cow position:
               
chr27:1637095-1636902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
469-662
               

               
Cow position:
               
chr27:674187-673999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
88, 120
               

               
Conread position:
               
477-652
               

               
Cow position:
               
chr27:14343598-14343431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
57, 79
               

               
Conread position:
               
477-662
               

               
Cow position:
               
chr27:22225741-22225549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
132, 72
               

               
Conread position:
               
477-662
               

               
Cow position:
               
chr27:30354493-30354297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
478-612
               

               
Cow position:
               
chr27:20497058-20497194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
75, 112
               

               
Conread position:
               
478-662
               

               
Cow position:
               
chr27:18593125-18593313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
107, 76
               

               
Conread position:
               
480-652
               

               
Cow position:
               
chr27:17646314-17646132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
482-690
               

               
Cow position:
               
chr27:20656763-20656561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
130, 160
               

               
Conread position:
               
494-662
               

               
Cow position:
               
chr27:21975921-21976095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
111, 137
               

               
Conread position:
               
522-662
               

               
Cow position:
               
chr27:20056072-20055924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
522-662
               

               
Cow position:
               
chr27:30672662-30672518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               
Show alignments to all cow chromosomes.