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Cow genome map

           
Conread name:
           
Ss1.1-rpgl18_p2.5
        

               
Conread position:
               
336-543
               

               
Cow position:
               
chr29:7040638-7040835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
337-662
               

               
Cow position:
               
chr29:23874704-23874368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
340-665
               

               
Cow position:
               
chr29:11916062-11915727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
76, 49
               

               
Conread position:
               
351-562
               

               
Cow position:
               
chr29:8798783-8798997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
353-652
               

               
Cow position:
               
chr29:16279206-16278918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
63, 75
               

               
Conread position:
               
356-613
               

               
Cow position:
               
chr29:1933358-1933604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 41
               

               
Conread position:
               
357-652
               

               
Cow position:
               
chr29:6636301-6636019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 21
               

               
Conread position:
               
357-662
               

               
Cow position:
               
chr29:2262756-2263088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
59, 202
               

               
Conread position:
               
360-595
               

               
Cow position:
               
chr29:22162042-22162264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
52, 100
               

               
Conread position:
               
360-650
               

               
Cow position:
               
chr29:43183091-43183386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 63
               

               
Conread position:
               
361-560
               

               
Cow position:
               
chr29:35070851-35071064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
361-607
               

               
Cow position:
               
chr29:19949524-19949282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
96, 26
               

               
Conread position:
               
361-612
               

               
Cow position:
               
chr29:37618514-37618273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
146, 35
               

               
Conread position:
               
361-614
               

               
Cow position:
               
chr29:4121080-4120820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 94
               

               
Conread position:
               
361-661
               

               
Cow position:
               
chr29:22175910-22175597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
361-662
               

               
Cow position:
               
chr29:11397696-11398015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
27, 167
               

               
Conread position:
               
361-662
               

               
Cow position:
               
chr29:27859011-27858703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 286
               

               
Conread position:
               
362-556
               

               
Cow position:
               
chr29:18748168-18748366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
362-570
               

               
Cow position:
               
chr29:25432675-25432464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 104
               

               
Conread position:
               
362-615
               

               
Cow position:
               
chr29:42630340-42630086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 58
               

               
Conread position:
               
362-660
               

               
Cow position:
               
chr29:9709911-9709606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
362-663
               

               
Cow position:
               
chr29:13373539-13373209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
55, 26
               

               
Conread position:
               
362-665
               

               
Cow position:
               
chr29:12680376-12680065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 26
               

               
Conread position:
               
365-546
               

               
Cow position:
               
chr29:7414709-7414535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
365-613
               

               
Cow position:
               
chr29:5893063-5892812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 100
               

               
Conread position:
               
365-662
               

               
Cow position:
               
chr29:35292305-35291999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
366-591
               

               
Cow position:
               
chr29:29308366-29308582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
366-593
               

               
Cow position:
               
chr29:39038053-39038282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 74
               

               
Conread position:
               
366-607
               

               
Cow position:
               
chr29:35501450-35501681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
366-662
               

               
Cow position:
               
chr29:4520548-4520244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
367-595
               

               
Cow position:
               
chr29:38979865-38980089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
90, 61
               

               
Conread position:
               
368-568
               

               
Cow position:
               
chr29:20177491-20177692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
147, 28
               

               
Conread position:
               
368-572
               

               
Cow position:
               
chr29:16200262-16200470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 98
               

               
Conread position:
               
368-583
               

               
Cow position:
               
chr29:22729779-22729565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
46, 83
               

               
Conread position:
               
368-607
               

               
Cow position:
               
chr29:31934588-31934352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
368-612
               

               
Cow position:
               
chr29:20770556-20770315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
368-613
               

               
Cow position:
               
chr29:27668440-27668693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 112
               

               
Conread position:
               
368-652
               

               
Cow position:
               
chr29:22518907-22519210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
74, 145
               

               
Conread position:
               
368-660
               

               
Cow position:
               
chr29:34359610-34359891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
368-662
               

               
Cow position:
               
chr29:12025265-12025561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 93
               

               
Conread position:
               
368-690
               

               
Cow position:
               
chr29:32799489-32799827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
48, 189
               

               
Conread position:
               
369-612
               

               
Cow position:
               
chr29:4070834-4070596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 51
               

               
Conread position:
               
369-613
               

               
Cow position:
               
chr29:17297340-17297103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
369-662
               

               
Cow position:
               
chr29:13028663-13028346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
47, 196
               

               
Conread position:
               
369-662
               

               
Cow position:
               
chr29:16657904-16657599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
370-575
               

               
Cow position:
               
chr29:4440994-4441200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
370-646
               

               
Cow position:
               
chr29:16196069-16195768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
14, 205
               

               
Conread position:
               
370-652
               

               
Cow position:
               
chr29:12783758-12784036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
370-661
               

               
Cow position:
               
chr29:10818247-10818525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
371-662
               

               
Cow position:
               
chr29:28775265-28775548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
193, 42
               

               
Conread position:
               
372-538
               

               
Cow position:
               
chr29:18605459-18605618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
372-607
               

               
Cow position:
               
chr29:22613630-22613403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
372-612
               

               
Cow position:
               
chr29:29923366-29923604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
45, 90
               

               
Conread position:
               
372-662
               

               
Cow position:
               
chr29:29769146-29769442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
372-665
               

               
Cow position:
               
chr29:25092314-25092019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
373-571
               

               
Cow position:
               
chr29:25288715-25288914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 151
               

               
Conread position:
               
373-607
               

               
Cow position:
               
chr29:31982029-31981804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
374-668
               

               
Cow position:
               
chr29:109878-109597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
43, 29
               

               
Conread position:
               
376-613
               

               
Cow position:
               
chr29:10058338-10058568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
377-611
               

               
Cow position:
               
chr29:501407-501165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
14, 90
               

               
Conread position:
               
378-552
               

               
Cow position:
               
chr29:27042477-27042300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
14, 85
               

               
Conread position:
               
378-552
               

               
Cow position:
               
chr29:40889485-40889651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
378-607
               

               
Cow position:
               
chr29:11042646-11042405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
378-607
               

               
Cow position:
               
chr29:25737216-25737441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
378-615
               

               
Cow position:
               
chr29:7310867-7310642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
378-615
               

               
Cow position:
               
chr29:36220747-36220500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
33, 241
               

               
Conread position:
               
378-659
               

               
Cow position:
               
chr29:749687-749997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 155
               

               
Conread position:
               
378-679
               

               
Cow position:
               
chr29:36531069-36530759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
378-690
               

               
Cow position:
               
chr29:26017296-26017621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 88
               

               
Conread position:
               
378-690
               

               
Cow position:
               
chr29:39329380-39329713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
379-556
               

               
Cow position:
               
chr29:10191842-10192015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
153, 37
               

               
Conread position:
               
379-598
               

               
Cow position:
               
chr29:43088509-43088293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
37, 72
               

               
Conread position:
               
379-605
               

               
Cow position:
               
chr29:8926247-8926486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
379-605
               

               
Cow position:
               
chr29:19762466-19762246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
379-645
               

               
Cow position:
               
chr29:29324228-29324487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
89, 23
               

               
Conread position:
               
379-662
               

               
Cow position:
               
chr29:38581195-38580886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 179
               

               
Conread position:
               
380-586
               

               
Cow position:
               
chr29:19176713-19176919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
109, 34
               

               
Conread position:
               
382-570
               

               
Cow position:
               
chr29:21666286-21666097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 61
               

               
Conread position:
               
382-579
               

               
Cow position:
               
chr29:19363908-19363712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
382-583
               

               
Cow position:
               
chr29:26540340-26540543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
382-591
               

               
Cow position:
               
chr29:22734906-22735115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
30, 82
               

               
Conread position:
               
382-593
               

               
Cow position:
               
chr29:45005433-45005640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
382-612
               

               
Cow position:
               
chr29:24624441-24624219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 64
               

               
Conread position:
               
382-613
               

               
Cow position:
               
chr29:20167623-20167391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
382-650
               

               
Cow position:
               
chr29:1022494-1022217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
53, 36
               

               
Conread position:
               
382-652
               

               
Cow position:
               
chr29:8004723-8005003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
68, 174
               

               
Conread position:
               
382-652
               

               
Cow position:
               
chr29:40583985-40583713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
33, 55
               

               
Conread position:
               
382-662
               

               
Cow position:
               
chr29:11434312-11434032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
65, 34
               

               
Conread position:
               
382-662
               

               
Cow position:
               
chr29:19428850-19428568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
383-560
               

               
Cow position:
               
chr29:26631248-26631061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
383-611
               

               
Cow position:
               
chr29:31929185-31928958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
383-615
               

               
Cow position:
               
chr29:19756636-19756397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
383-650
               

               
Cow position:
               
chr29:21645516-21645246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
30, 144
               

               
Conread position:
               
383-652
               

               
Cow position:
               
chr29:24293069-24292790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
383-685
               

               
Cow position:
               
chr29:42771852-42771537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 146
               

               
Conread position:
               
384-536
               

               
Cow position:
               
chr29:3192724-3192871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
384-575
               

               
Cow position:
               
chr29:19187224-19187031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
384-577
               

               
Cow position:
               
chr29:19742671-19742457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 104
               

               
Conread position:
               
384-580
               

               
Cow position:
               
chr29:629735-629538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
384-582
               

               
Cow position:
               
chr29:2730082-2730288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
5, 107
               

               
Conread position:
               
384-583
               

               
Cow position:
               
chr29:15798149-15797949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
384-583
               

               
Cow position:
               
chr29:19125528-19125319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
384-607
               

               
Cow position:
               
chr29:396600-396386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 59
               

               
Conread position:
               
384-610
               

               
Cow position:
               
chr29:23155433-23155198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 195
               

               
Conread position:
               
384-612
               

               
Cow position:
               
chr29:30548973-30548744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
384-617
               

               
Cow position:
               
chr29:36357326-36357094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
384-662
               

               
Cow position:
               
chr29:706777-707042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
223, 57
               

               
Conread position:
               
384-662
               

               
Cow position:
               
chr29:17110151-17109877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
384-690
               

               
Cow position:
               
chr29:31489522-31489202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 83
               

               
Conread position:
               
385-568
               

               
Cow position:
               
chr29:35737120-35737315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
385-661
               

               
Cow position:
               
chr29:40959646-40959937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
385-662
               

               
Cow position:
               
chr29:5046850-5046561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
385-662
               

               
Cow position:
               
chr29:17222613-17222322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
387-552
               

               
Cow position:
               
chr29:17663563-17663733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
387-575
               

               
Cow position:
               
chr29:22335030-22335224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
387-583
               

               
Cow position:
               
chr29:15796679-15796483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
388-550
               

               
Cow position:
               
chr29:27487373-27487216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
388-662
               

               
Cow position:
               
chr29:34745467-34745752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
20, 72
               

               
Conread position:
               
389-566
               

               
Cow position:
               
chr29:33393870-33393692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
389-661
               

               
Cow position:
               
chr29:11053666-11053949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
389-662
               

               
Cow position:
               
chr29:7955795-7956077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 29
               

               
Conread position:
               
390-635
               

               
Cow position:
               
chr29:1011401-1011637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 35
               

               
Conread position:
               
391-577
               

               
Cow position:
               
chr29:40916989-40916811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
392-575
               

               
Cow position:
               
chr29:21443151-21443333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
394-577
               

               
Cow position:
               
chr29:17022334-17022153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
396-580
               

               
Cow position:
               
chr29:40615312-40615493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
397-662
               

               
Cow position:
               
chr29:13639184-13639461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 44
               

               
Conread position:
               
407-662
               

               
Cow position:
               
chr29:40298851-40299101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
185, 21
               

               
Conread position:
               
411-577
               

               
Cow position:
               
chr29:17436909-17436754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
411-612
               

               
Cow position:
               
chr29:86842-87042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
411-652
               

               
Cow position:
               
chr29:9310765-9310537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 47
               

               
Conread position:
               
412-563
               

               
Cow position:
               
chr29:19061600-19061757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
38, 100
               

               
Conread position:
               
412-575
               

               
Cow position:
               
chr29:11116502-11116656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
412-579
               

               
Cow position:
               
chr29:34760240-34760412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
33, 148
               

               
Conread position:
               
412-580
               

               
Cow position:
               
chr29:8634813-8634654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
412-580
               

               
Cow position:
               
chr29:18878318-18878481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
412-583
               

               
Cow position:
               
chr29:24051217-24051384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
412-586
               

               
Cow position:
               
chr29:7954803-7954973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
412-595
               

               
Cow position:
               
chr29:34358816-34358993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
412-605
               

               
Cow position:
               
chr29:44684258-44684078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
6, 10
               

               
Conread position:
               
412-607
               

               
Cow position:
               
chr29:5520323-5520512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
412-613
               

               
Cow position:
               
chr29:8163666-8163862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
193, 31
               

               
Conread position:
               
412-617
               

               
Cow position:
               
chr29:24187902-24188102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
412-655
               

               
Cow position:
               
chr29:29057337-29057096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
197, 43
               

               
Conread position:
               
412-662
               

               
Cow position:
               
chr29:22936447-22936179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
412-662
               

               
Cow position:
               
chr29:24952848-24952597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
194, 47
               

               
Conread position:
               
412-662
               

               
Cow position:
               
chr29:30441100-30440840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
146, 45
               

               
Conread position:
               
412-701
               

               
Cow position:
               
chr29:15947330-15947044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
201, 45
               

               
Conread position:
               
413-595
               

               
Cow position:
               
chr29:22723759-22723586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
413-612
               

               
Cow position:
               
chr29:23825052-23825242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
413-612
               

               
Cow position:
               
chr29:30681543-30681741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 145
               

               
Conread position:
               
416-570
               

               
Cow position:
               
chr29:5653099-5652950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
109, 39
               

               
Conread position:
               
416-661
               

               
Cow position:
               
chr29:32210909-32211146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
193, 29
               

               
Conread position:
               
418-661
               

               
Cow position:
               
chr29:36210303-36210071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
44, 71
               

               
Conread position:
               
419-613
               

               
Cow position:
               
chr29:17804684-17804502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
420-663
               

               
Cow position:
               
chr29:1325591-1325349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
189, 35
               

               
Conread position:
               
424-662
               

               
Cow position:
               
chr29:41531000-41530756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
180, 33
               

               
Conread position:
               
425-642
               

               
Cow position:
               
chr29:40633801-40633576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
430-652
               

               
Cow position:
               
chr29:31814086-31813868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
432-607
               

               
Cow position:
               
chr29:30918701-30918522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
434-690
               

               
Cow position:
               
chr29:5947661-5947911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
226, 31
               

               
Conread position:
               
437-661
               

               
Cow position:
               
chr29:847498-847731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 124
               

               
Conread position:
               
440-662
               

               
Cow position:
               
chr29:6286019-6286249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
442-614
               

               
Cow position:
               
chr29:5186355-5186525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
443-580
               

               
Cow position:
               
chr29:16672628-16672491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
443-612
               

               
Cow position:
               
chr29:16365747-16365920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
14, 165
               

               
Conread position:
               
443-613
               

               
Cow position:
               
chr29:42883821-42883990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 15
               

               
Conread position:
               
443-652
               

               
Cow position:
               
chr29:6293340-6293554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
444-574
               

               
Cow position:
               
chr29:19059946-19060076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
445-652
               

               
Cow position:
               
chr29:6844498-6844708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
450-607
               

               
Cow position:
               
chr29:43544472-43544629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
7, 124
               

               
Conread position:
               
453-595
               

               
Cow position:
               
chr29:4874753-4874898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 58
               

               
Conread position:
               
453-662
               

               
Cow position:
               
chr29:39567807-39567596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
132, 23
               

               
Conread position:
               
457-615
               

               
Cow position:
               
chr29:40994768-40994926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
156, 86
               

               
Conread position:
               
457-661
               

               
Cow position:
               
chr29:44236575-44236361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
151, 20
               

               
Conread position:
               
458-601
               

               
Cow position:
               
chr29:1220009-1220152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
458-606
               

               
Cow position:
               
chr29:4423318-4423465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
458-613
               

               
Cow position:
               
chr29:5789149-5788996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
458-613
               

               
Cow position:
               
chr29:7103680-7103525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
458-615
               

               
Cow position:
               
chr29:40853052-40852893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 47
               

               
Conread position:
               
458-655
               

               
Cow position:
               
chr29:26653921-26654123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
458-659
               

               
Cow position:
               
chr29:28979381-28979574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
458-662
               

               
Cow position:
               
chr29:11705235-11705032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
20, 81
               

               
Conread position:
               
459-607
               

               
Cow position:
               
chr29:5210612-5210465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
459-613
               

               
Cow position:
               
chr29:32926225-32926072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
459-652
               

               
Cow position:
               
chr29:42886665-42886470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
459-662
               

               
Cow position:
               
chr29:32290733-32290517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
460-566
               

               
Cow position:
               
chr29:26208095-26207989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
65, 59
               

               
Conread position:
               
460-607
               

               
Cow position:
               
chr29:27819339-27819192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
460-690
               

               
Cow position:
               
chr29:40117691-40117449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
136, 64
               

               
Conread position:
               
461-662
               

               
Cow position:
               
chr29:28166103-28166304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
134, 92
               

               
Conread position:
               
461-662
               

               
Cow position:
               
chr29:28195402-28195604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
146, 93
               

               
Conread position:
               
463-614
               

               
Cow position:
               
chr29:25333344-25333492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
463-678
               

               
Cow position:
               
chr29:43251048-43251275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 176
               

               
Conread position:
               
466-651
               

               
Cow position:
               
chr29:13867096-13867291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 34
               

               
Conread position:
               
466-652
               

               
Cow position:
               
chr29:4085422-4085239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
148, 24
               

               
Conread position:
               
466-652
               

               
Cow position:
               
chr29:32894377-32894188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
138, 156
               

               
Conread position:
               
467-662
               

               
Cow position:
               
chr29:13372776-13372574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
147, 24
               

               
Conread position:
               
467-690
               

               
Cow position:
               
chr29:17409448-17409212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
469-662
               

               
Cow position:
               
chr29:6015237-6015031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
469-662
               

               
Cow position:
               
chr29:8862370-8862569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
136, 72
               

               
Conread position:
               
469-678
               

               
Cow position:
               
chr29:13127009-13127230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
476-614
               

               
Cow position:
               
chr29:1229711-1229575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
476-662
               

               
Cow position:
               
chr29:27873705-27873513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
477-613
               

               
Cow position:
               
chr29:12625873-12626009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
477-614
               

               
Cow position:
               
chr29:17154881-17154745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
478-616
               

               
Cow position:
               
chr29:8686432-8686296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
478-662
               

               
Cow position:
               
chr29:19821385-19821196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
126, 69
               

               
Conread position:
               
484-607
               

               
Cow position:
               
chr29:19558923-19559046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
486-662
               

               
Cow position:
               
chr29:868868-868684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
123, 5
               

               
Conread position:
               
489-607
               

               
Cow position:
               
chr29:40903266-40903148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
489-662
               

               
Cow position:
               
chr29:41365200-41365021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
118, 45
               

               
Conread position:
               
491-648
               

               
Cow position:
               
chr29:26319254-26319099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
115, 14
               

               
Conread position:
               
502-652
               

               
Cow position:
               
chr29:693930-694081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
504-652
               

               
Cow position:
               
chr29:36427337-36427484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
78, 84
               

               
Conread position:
               
505-662
               

               
Cow position:
               
chr29:42262948-42263103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
150, 77
               

               
Conread position:
               
505-689
               

               
Cow position:
               
chr29:26130849-26130666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 111
               
Show alignments to all cow chromosomes.