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Cow genome map

           
Conread name:
           
Ss1.1-rpgl18_p2.5
        

               
Conread position:
               
331-645
               

               
Cow position:
               
chrX:15546165-15545847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 135
               

               
Conread position:
               
343-613
               

               
Cow position:
               
chrX:13122202-13121934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
145, 59
               

               
Conread position:
               
348-547
               

               
Cow position:
               
chrX:30041838-30042029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
348-574
               

               
Cow position:
               
chrX:27667706-27667460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
350-694
               

               
Cow position:
               
chrX:42492258-42492608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
33, 74
               

               
Conread position:
               
351-662
               

               
Cow position:
               
chrX:40480587-40480931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 160
               

               
Conread position:
               
352-652
               

               
Cow position:
               
chrX:41674358-41674058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 71
               

               
Conread position:
               
353-568
               

               
Cow position:
               
chrX:33466879-33466666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
62, 14
               

               
Conread position:
               
353-613
               

               
Cow position:
               
chrX:27431665-27431922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
70, 87
               

               
Conread position:
               
353-663
               

               
Cow position:
               
chrX:48237076-48236755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
354-608
               

               
Cow position:
               
chrX:12979575-12979833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
356-575
               

               
Cow position:
               
chrX:44754129-44754346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
356-612
               

               
Cow position:
               
chrX:26979533-26979792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 107
               

               
Conread position:
               
356-636
               

               
Cow position:
               
chrX:20345707-20345420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
60, 108
               

               
Conread position:
               
357-550
               

               
Cow position:
               
chrX:21288360-21288549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
143, 10
               

               
Conread position:
               
357-575
               

               
Cow position:
               
chrX:1960170-1960391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 95
               

               
Conread position:
               
357-575
               

               
Cow position:
               
chrX:6389334-6389113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
59, 103
               

               
Conread position:
               
357-610
               

               
Cow position:
               
chrX:27175240-27175002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
357-613
               

               
Cow position:
               
chrX:30672128-30672399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 264
               

               
Conread position:
               
357-660
               

               
Cow position:
               
chrX:12095515-12095834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
7, 110
               

               
Conread position:
               
358-608
               

               
Cow position:
               
chrX:32942825-32943075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
18, 104
               

               
Conread position:
               
360-612
               

               
Cow position:
               
chrX:5919740-5919489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
11, 100
               

               
Conread position:
               
360-652
               

               
Cow position:
               
chrX:27207046-27206757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
360-662
               

               
Cow position:
               
chrX:32821277-32820967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
360-689
               

               
Cow position:
               
chrX:46072575-46072911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
361-561
               

               
Cow position:
               
chrX:47100343-47100549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 106
               

               
Conread position:
               
361-595
               

               
Cow position:
               
chrX:35986066-35985834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
55, 83
               

               
Conread position:
               
361-601
               

               
Cow position:
               
chrX:41270717-41270978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
361-606
               

               
Cow position:
               
chrX:39179995-39180230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
361-607
               

               
Cow position:
               
chrX:34420977-34420736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
361-607
               

               
Cow position:
               
chrX:42480075-42479835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
51, 6
               

               
Conread position:
               
361-611
               

               
Cow position:
               
chrX:42894172-42893922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
361-612
               

               
Cow position:
               
chrX:17231990-17231732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
361-652
               

               
Cow position:
               
chrX:46588074-46587768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
12, 84
               

               
Conread position:
               
361-659
               

               
Cow position:
               
chrX:47345580-47345274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
361-661
               

               
Cow position:
               
chrX:23562122-23561799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
54, 26
               

               
Conread position:
               
361-661
               

               
Cow position:
               
chrX:35885479-35885789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 99
               

               
Conread position:
               
361-662
               

               
Cow position:
               
chrX:15146949-15147250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 21
               

               
Conread position:
               
361-662
               

               
Cow position:
               
chrX:34565534-34565218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
362-535
               

               
Cow position:
               
chrX:36961960-36961790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
28, 89
               

               
Conread position:
               
362-568
               

               
Cow position:
               
chrX:43014410-43014632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
362-575
               

               
Cow position:
               
chrX:17498575-17498356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
22, 104
               

               
Conread position:
               
362-580
               

               
Cow position:
               
chrX:46910060-46909844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
362-583
               

               
Cow position:
               
chrX:32867120-32866901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
362-595
               

               
Cow position:
               
chrX:29467537-29467764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
54, 85
               

               
Conread position:
               
362-595
               

               
Cow position:
               
chrX:45977175-45976940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
362-607
               

               
Cow position:
               
chrX:6599524-6599780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
54, 233
               

               
Conread position:
               
362-607
               

               
Cow position:
               
chrX:42449763-42450012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
27, 5
               

               
Conread position:
               
362-653
               

               
Cow position:
               
chrX:27446935-27446643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
362-657
               

               
Cow position:
               
chrX:13177233-13177526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
362-662
               

               
Cow position:
               
chrX:30962625-30962936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 101
               

               
Conread position:
               
362-662
               

               
Cow position:
               
chrX:45598357-45598664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
363-571
               

               
Cow position:
               
chrX:41435292-41435511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
363-575
               

               
Cow position:
               
chrX:4092170-4091958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
50, 32
               

               
Conread position:
               
363-652
               

               
Cow position:
               
chrX:44055053-44054755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
18, 91
               

               
Conread position:
               
364-549
               

               
Cow position:
               
chrX:231777-231958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
23, 84
               

               
Conread position:
               
365-595
               

               
Cow position:
               
chrX:11325862-11326083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
365-613
               

               
Cow position:
               
chrX:20887402-20887644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 83
               

               
Conread position:
               
365-662
               

               
Cow position:
               
chrX:34441205-34441514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 49
               

               
Conread position:
               
365-690
               

               
Cow position:
               
chrX:11656325-11656001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 101
               

               
Conread position:
               
366-568
               

               
Cow position:
               
chrX:31983332-31983544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
366-581
               

               
Cow position:
               
chrX:2314371-2314591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
366-607
               

               
Cow position:
               
chrX:4152798-4153029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
366-610
               

               
Cow position:
               
chrX:4559981-4559738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
17, 185
               

               
Conread position:
               
366-626
               

               
Cow position:
               
chrX:42331517-42331262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
216, 16
               

               
Conread position:
               
366-662
               

               
Cow position:
               
chrX:7351546-7351238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
366-690
               

               
Cow position:
               
chrX:5872566-5872230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
367-572
               

               
Cow position:
               
chrX:42875454-42875250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 61
               

               
Conread position:
               
367-583
               

               
Cow position:
               
chrX:34532758-34532546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 95
               

               
Conread position:
               
367-662
               

               
Cow position:
               
chrX:25037237-25036924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
368-568
               

               
Cow position:
               
chrX:40055983-40056178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
181, 87
               

               
Conread position:
               
368-601
               

               
Cow position:
               
chrX:35285420-35285181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
368-603
               

               
Cow position:
               
chrX:19018585-19018825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
368-603
               

               
Cow position:
               
chrX:25815654-25815895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
21, 99
               

               
Conread position:
               
368-608
               

               
Cow position:
               
chrX:44961988-44961752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
368-611
               

               
Cow position:
               
chrX:34412090-34411844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
368-611
               

               
Cow position:
               
chrX:47349780-47349514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
368-612
               

               
Cow position:
               
chrX:5118254-5118505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
47, 96
               

               
Conread position:
               
368-615
               

               
Cow position:
               
chrX:17956933-17956687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 95
               

               
Conread position:
               
368-652
               

               
Cow position:
               
chrX:12290962-12290670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
368-662
               

               
Cow position:
               
chrX:36866418-36866108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 100
               

               
Conread position:
               
369-552
               

               
Cow position:
               
chrX:37140925-37141112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
53, 154
               

               
Conread position:
               
369-563
               

               
Cow position:
               
chrX:41453542-41453348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
56, 87
               

               
Conread position:
               
369-584
               

               
Cow position:
               
chrX:23358874-23359086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 49
               

               
Conread position:
               
369-586
               

               
Cow position:
               
chrX:28940487-28940265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
48, 95
               

               
Conread position:
               
369-662
               

               
Cow position:
               
chrX:24332020-24331716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
47, 95
               

               
Conread position:
               
369-662
               

               
Cow position:
               
chrX:36356347-36356052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
54, 44
               

               
Conread position:
               
369-662
               

               
Cow position:
               
chrX:42246949-42247249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
235, 33
               

               
Conread position:
               
369-690
               

               
Cow position:
               
chrX:29230249-29229919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
370-578
               

               
Cow position:
               
chrX:42311894-42311704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
370-583
               

               
Cow position:
               
chrX:23266667-23266441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
68, 33
               

               
Conread position:
               
370-607
               

               
Cow position:
               
chrX:19394797-19394555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
370-612
               

               
Cow position:
               
chrX:2936196-2935954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
370-662
               

               
Cow position:
               
chrX:4632612-4632912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 94
               

               
Conread position:
               
370-662
               

               
Cow position:
               
chrX:9634950-9635248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
370-662
               

               
Cow position:
               
chrX:22387001-22387305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
45, 193
               

               
Conread position:
               
370-678
               

               
Cow position:
               
chrX:11633927-11633601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 97
               

               
Conread position:
               
371-581
               

               
Cow position:
               
chrX:11602246-11602454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 90
               

               
Conread position:
               
371-594
               

               
Cow position:
               
chrX:16984882-16984656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
18, 62
               

               
Conread position:
               
371-605
               

               
Cow position:
               
chrX:42855702-42855462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
371-607
               

               
Cow position:
               
chrX:16762998-16762773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 21
               

               
Conread position:
               
371-613
               

               
Cow position:
               
chrX:152146-151900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
371-613
               

               
Cow position:
               
chrX:31250620-31250384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
371-693
               

               
Cow position:
               
chrX:7648172-7648495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
372-549
               

               
Cow position:
               
chrX:11589127-11589307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
372-580
               

               
Cow position:
               
chrX:32747959-32747759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
196, 17
               

               
Conread position:
               
372-606
               

               
Cow position:
               
chrX:35659034-35658803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
372-652
               

               
Cow position:
               
chrX:42927589-42927871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
372-662
               

               
Cow position:
               
chrX:18204226-18204524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 88
               

               
Conread position:
               
373-552
               

               
Cow position:
               
chrX:17525639-17525810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 16
               

               
Conread position:
               
373-566
               

               
Cow position:
               
chrX:5097555-5097756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
373-586
               

               
Cow position:
               
chrX:32877140-32877352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
42, 76
               

               
Conread position:
               
373-607
               

               
Cow position:
               
chrX:24749326-24749090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
43, 89
               

               
Conread position:
               
373-612
               

               
Cow position:
               
chrX:22392749-22392987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 64
               

               
Conread position:
               
373-652
               

               
Cow position:
               
chrX:29680007-29680312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
373-662
               

               
Cow position:
               
chrX:20339654-20339952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
373-662
               

               
Cow position:
               
chrX:40680843-40680548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
235, 29
               

               
Conread position:
               
373-665
               

               
Cow position:
               
chrX:34792086-34792373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
42, 14
               

               
Conread position:
               
376-661
               

               
Cow position:
               
chrX:23497461-23497730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 75
               

               
Conread position:
               
377-575
               

               
Cow position:
               
chrX:28068086-28067884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
377-575
               

               
Cow position:
               
chrX:48822107-48822308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
377-579
               

               
Cow position:
               
chrX:8327140-8326934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
377-612
               

               
Cow position:
               
chrX:35269091-35268863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
51, 82
               

               
Conread position:
               
378-556
               

               
Cow position:
               
chrX:23182733-23182930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
378-562
               

               
Cow position:
               
chrX:6640658-6640474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 95
               

               
Conread position:
               
378-562
               

               
Cow position:
               
chrX:47063034-47063228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 175
               

               
Conread position:
               
378-572
               

               
Cow position:
               
chrX:37867488-37867290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 88
               

               
Conread position:
               
378-583
               

               
Cow position:
               
chrX:43115383-43115177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 88
               

               
Conread position:
               
378-606
               

               
Cow position:
               
chrX:11654000-11653767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
378-612
               

               
Cow position:
               
chrX:7695997-7695748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 122
               

               
Conread position:
               
378-612
               

               
Cow position:
               
chrX:33854993-33855223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
378-613
               

               
Cow position:
               
chrX:24365588-24365825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
38, 86
               

               
Conread position:
               
378-613
               

               
Cow position:
               
chrX:38587612-38587847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
378-613
               

               
Cow position:
               
chrX:41123279-41123057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
231, 40
               

               
Conread position:
               
378-614
               

               
Cow position:
               
chrX:24170491-24170734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
378-615
               

               
Cow position:
               
chrX:3806912-3806675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 40
               

               
Conread position:
               
378-634
               

               
Cow position:
               
chrX:16323781-16324038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
35, 89
               

               
Conread position:
               
378-651
               

               
Cow position:
               
chrX:34222932-34222663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
226, 11
               

               
Conread position:
               
378-658
               

               
Cow position:
               
chrX:15006925-15007208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
204, 52
               

               
Conread position:
               
378-661
               

               
Cow position:
               
chrX:30133090-30133382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
38, 87
               

               
Conread position:
               
378-661
               

               
Cow position:
               
chrX:33654609-33654897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
38, 88
               

               
Conread position:
               
378-661
               

               
Cow position:
               
chrX:38654198-38654494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 230
               

               
Conread position:
               
378-662
               

               
Cow position:
               
chrX:26881327-26881631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 74
               

               
Conread position:
               
378-662
               

               
Cow position:
               
chrX:37780878-37781174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
378-662
               

               
Cow position:
               
chrX:41878703-41878995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
378-690
               

               
Cow position:
               
chrX:27705821-27705496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
378-690
               

               
Cow position:
               
chrX:34377173-34376856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
379-582
               

               
Cow position:
               
chrX:46079321-46079112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 107
               

               
Conread position:
               
379-612
               

               
Cow position:
               
chrX:38853444-38853195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 181
               

               
Conread position:
               
379-613
               

               
Cow position:
               
chrX:23498430-23498680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
37, 184
               

               
Conread position:
               
379-662
               

               
Cow position:
               
chrX:11614908-11614637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
226, 43
               

               
Conread position:
               
379-662
               

               
Cow position:
               
chrX:38094293-38094584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
379-665
               

               
Cow position:
               
chrX:40685096-40685396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
380-580
               

               
Cow position:
               
chrX:31373782-31373565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
380-607
               

               
Cow position:
               
chrX:24633918-24633686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 64
               

               
Conread position:
               
380-662
               

               
Cow position:
               
chrX:16575331-16575060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
274, 37
               

               
Conread position:
               
382-542
               

               
Cow position:
               
chrX:41215553-41215389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
382-567
               

               
Cow position:
               
chrX:23471638-23471824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
29, 84
               

               
Conread position:
               
382-568
               

               
Cow position:
               
chrX:23485760-23485563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 195
               

               
Conread position:
               
382-569
               

               
Cow position:
               
chrX:40649132-40648933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
31, 125
               

               
Conread position:
               
382-571
               

               
Cow position:
               
chrX:6480365-6480558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
382-574
               

               
Cow position:
               
chrX:27270599-27270410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
382-583
               

               
Cow position:
               
chrX:20583890-20583692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
382-586
               

               
Cow position:
               
chrX:908171-907969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
382-603
               

               
Cow position:
               
chrX:38302045-38301815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 86
               

               
Conread position:
               
382-607
               

               
Cow position:
               
chrX:32910327-32910106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
382-607
               

               
Cow position:
               
chrX:38218943-38218716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
382-608
               

               
Cow position:
               
chrX:22075025-22074796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
31, 68
               

               
Conread position:
               
382-612
               

               
Cow position:
               
chrX:25412149-25411904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
382-612
               

               
Cow position:
               
chrX:27306669-27306451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
382-613
               

               
Cow position:
               
chrX:37072616-37072384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
382-614
               

               
Cow position:
               
chrX:20677912-20678143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 34
               

               
Conread position:
               
382-627
               

               
Cow position:
               
chrX:27668732-27668977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
382-646
               

               
Cow position:
               
chrX:40108283-40108562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
382-647
               

               
Cow position:
               
chrX:45968367-45968105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
215, 73
               

               
Conread position:
               
382-662
               

               
Cow position:
               
chrX:10251972-10252244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
382-662
               

               
Cow position:
               
chrX:27393788-27394083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 273
               

               
Conread position:
               
382-663
               

               
Cow position:
               
chrX:5637949-5638232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 77
               

               
Conread position:
               
382-665
               

               
Cow position:
               
chrX:9251933-9252227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
34, 83
               

               
Conread position:
               
382-685
               

               
Cow position:
               
chrX:40337141-40336835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
382-690
               

               
Cow position:
               
chrX:5017186-5017505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 135
               

               
Conread position:
               
383-606
               

               
Cow position:
               
chrX:31744786-31745002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
194, 35
               

               
Conread position:
               
383-615
               

               
Cow position:
               
chrX:17966553-17966335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
383-615
               

               
Cow position:
               
chrX:29733363-29733600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
383-622
               

               
Cow position:
               
chrX:4399347-4399113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
383-652
               

               
Cow position:
               
chrX:7722203-7721937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 57
               

               
Conread position:
               
383-652
               

               
Cow position:
               
chrX:18964605-18964876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
222, 75
               

               
Conread position:
               
383-662
               

               
Cow position:
               
chrX:36283569-36283289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
383-665
               

               
Cow position:
               
chrX:27261419-27261123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
384-563
               

               
Cow position:
               
chrX:41990895-41991088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
384-596
               

               
Cow position:
               
chrX:753390-753165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
384-596
               

               
Cow position:
               
chrX:22115086-22115304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
384-596
               

               
Cow position:
               
chrX:23097990-23098191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
118, 70
               

               
Conread position:
               
384-609
               

               
Cow position:
               
chrX:17524155-17524384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
384-614
               

               
Cow position:
               
chrX:40531798-40532046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
32, 243
               

               
Conread position:
               
384-645
               

               
Cow position:
               
chrX:37489957-37489678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
29, 125
               

               
Conread position:
               
384-652
               

               
Cow position:
               
chrX:42380884-42381154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
384-662
               

               
Cow position:
               
chrX:161628-161350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
230, 38
               

               
Conread position:
               
384-662
               

               
Cow position:
               
chrX:34314249-34313966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
384-665
               

               
Cow position:
               
chrX:9201771-9201485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
200, 74
               

               
Conread position:
               
385-662
               

               
Cow position:
               
chrX:20168782-20168495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
385-665
               

               
Cow position:
               
chrX:48558973-48558683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 57
               

               
Conread position:
               
386-650
               

               
Cow position:
               
chrX:20957454-20957198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
386-662
               

               
Cow position:
               
chrX:4515905-4515621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
102, 68
               

               
Conread position:
               
387-575
               

               
Cow position:
               
chrX:4612649-4612848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 111
               

               
Conread position:
               
387-583
               

               
Cow position:
               
chrX:21986076-21986264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
387-612
               

               
Cow position:
               
chrX:38642467-38642247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
387-614
               

               
Cow position:
               
chrX:31626740-31626978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
24, 172
               

               
Conread position:
               
387-616
               

               
Cow position:
               
chrX:27074826-27075058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
29, 88
               

               
Conread position:
               
387-652
               

               
Cow position:
               
chrX:7278131-7277859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
387-652
               

               
Cow position:
               
chrX:35382817-35383069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
387-662
               

               
Cow position:
               
chrX:18694697-18694987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
29, 171
               

               
Conread position:
               
387-662
               

               
Cow position:
               
chrX:44397236-44396955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 38
               

               
Conread position:
               
388-607
               

               
Cow position:
               
chrX:41526310-41526520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
388-662
               

               
Cow position:
               
chrX:27508800-27509086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
390-551
               

               
Cow position:
               
chrX:26692434-26692269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
390-554
               

               
Cow position:
               
chrX:42087048-42086883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 74
               

               
Conread position:
               
392-662
               

               
Cow position:
               
chrX:34503140-34502859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 58
               

               
Conread position:
               
396-681
               

               
Cow position:
               
chrX:30840757-30840464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
397-612
               

               
Cow position:
               
chrX:37129485-37129267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
18, 212
               

               
Conread position:
               
398-661
               

               
Cow position:
               
chrX:31252613-31252356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
208, 56
               

               
Conread position:
               
407-721
               

               
Cow position:
               
chrX:25282839-25283140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 21
               

               
Conread position:
               
410-576
               

               
Cow position:
               
chrX:35681760-35681601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
412-559
               

               
Cow position:
               
chrX:41363659-41363809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
56, 46
               

               
Conread position:
               
412-580
               

               
Cow position:
               
chrX:44995691-44995527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 43
               

               
Conread position:
               
412-600
               

               
Cow position:
               
chrX:42836372-42836190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
412-604
               

               
Cow position:
               
chrX:1122355-1122538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
412-605
               

               
Cow position:
               
chrX:43150622-43150431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
154, 43
               

               
Conread position:
               
412-607
               

               
Cow position:
               
chrX:4327992-4328181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
412-607
               

               
Cow position:
               
chrX:40035248-40035439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
147, 31
               

               
Conread position:
               
412-612
               

               
Cow position:
               
chrX:35276177-35275983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
412-612
               

               
Cow position:
               
chrX:46532299-46532498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
412-613
               

               
Cow position:
               
chrX:13868895-13868700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
79, 46
               

               
Conread position:
               
412-613
               

               
Cow position:
               
chrX:21328105-21327907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
147, 45
               

               
Conread position:
               
412-626
               

               
Cow position:
               
chrX:29478913-29478708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
412-652
               

               
Cow position:
               
chrX:169350-169597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
190, 43
               

               
Conread position:
               
412-652
               

               
Cow position:
               
chrX:6407735-6407492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
198, 45
               

               
Conread position:
               
412-652
               

               
Cow position:
               
chrX:44339129-44339376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
202, 46
               

               
Conread position:
               
412-659
               

               
Cow position:
               
chrX:10516445-10516191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
193, 45
               

               
Conread position:
               
412-662
               

               
Cow position:
               
chrX:4109376-4109129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
170, 31
               

               
Conread position:
               
412-662
               

               
Cow position:
               
chrX:21593483-21593225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 46
               

               
Conread position:
               
412-662
               

               
Cow position:
               
chrX:23513816-23514078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
45, 91
               

               
Conread position:
               
412-662
               

               
Cow position:
               
chrX:29601638-29601893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
194, 45
               

               
Conread position:
               
412-662
               

               
Cow position:
               
chrX:31294378-31294626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 57
               

               
Conread position:
               
412-662
               

               
Cow position:
               
chrX:38549637-38549384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
156, 26
               

               
Conread position:
               
412-663
               

               
Cow position:
               
chrX:27228320-27228064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
412-701
               

               
Cow position:
               
chrX:28877975-28878270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
56, 268
               

               
Conread position:
               
413-583
               

               
Cow position:
               
chrX:37062377-37062559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
413-602
               

               
Cow position:
               
chrX:40046379-40046567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
33, 130
               

               
Conread position:
               
413-605
               

               
Cow position:
               
chrX:34543975-34543788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
413-605
               

               
Cow position:
               
chrX:42282767-42282581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
149, 41
               

               
Conread position:
               
413-613
               

               
Cow position:
               
chrX:8869214-8869405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
413-650
               

               
Cow position:
               
chrX:28865814-28866055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
174, 44
               

               
Conread position:
               
413-662
               

               
Cow position:
               
chrX:10831291-10831556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
46, 104
               

               
Conread position:
               
413-662
               

               
Cow position:
               
chrX:31489711-31489457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
200, 42
               

               
Conread position:
               
413-662
               

               
Cow position:
               
chrX:39220276-39220017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
47, 244
               

               
Conread position:
               
413-662
               

               
Cow position:
               
chrX:41027350-41027093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
192, 44
               

               
Conread position:
               
413-665
               

               
Cow position:
               
chrX:22822245-22821985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
30, 194
               

               
Conread position:
               
414-615
               

               
Cow position:
               
chrX:18046593-18046396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
417-661
               

               
Cow position:
               
chrX:616066-616324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
40, 17
               

               
Conread position:
               
420-607
               

               
Cow position:
               
chrX:34315705-34315521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
123, 46
               

               
Conread position:
               
420-662
               

               
Cow position:
               
chrX:11717594-11717851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
15, 39
               

               
Conread position:
               
421-659
               

               
Cow position:
               
chrX:4043674-4043919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
36, 127
               

               
Conread position:
               
423-580
               

               
Cow position:
               
chrX:29562901-29563053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
427-664
               

               
Cow position:
               
chrX:6463785-6463546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 132
               

               
Conread position:
               
428-615
               

               
Cow position:
               
chrX:37910627-37910441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 12
               

               
Conread position:
               
428-690
               

               
Cow position:
               
chrX:5679385-5679656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 118
               

               
Conread position:
               
430-591
               

               
Cow position:
               
chrX:28098506-28098345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
18, 49
               

               
Conread position:
               
430-612
               

               
Cow position:
               
chrX:40269674-40269488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
434-552
               

               
Cow position:
               
chrX:16481394-16481514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
434-558
               

               
Cow position:
               
chrX:7107677-7107553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 43
               

               
Conread position:
               
434-612
               

               
Cow position:
               
chrX:23562807-23562629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
434-612
               

               
Cow position:
               
chrX:36848403-36848580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
23, 57
               

               
Conread position:
               
434-661
               

               
Cow position:
               
chrX:19097043-19097284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
434-690
               

               
Cow position:
               
chrX:23785824-23785571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 88
               

               
Conread position:
               
434-690
               

               
Cow position:
               
chrX:43730048-43730309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
23, 140
               

               
Conread position:
               
434-701
               

               
Cow position:
               
chrX:16348395-16348669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
435-662
               

               
Cow position:
               
chrX:43527681-43527447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
167, 12
               

               
Conread position:
               
436-575
               

               
Cow position:
               
chrX:23860820-23860960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
436-604
               

               
Cow position:
               
chrX:30543114-30543279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
436-662
               

               
Cow position:
               
chrX:1503501-1503275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 125
               

               
Conread position:
               
436-690
               

               
Cow position:
               
chrX:7646430-7646165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 218
               

               
Conread position:
               
439-580
               

               
Cow position:
               
chrX:11181028-11181167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
439-607
               

               
Cow position:
               
chrX:29501715-29501879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
440-612
               

               
Cow position:
               
chrX:11082449-11082625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
441-591
               

               
Cow position:
               
chrX:40355200-40355053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 113
               

               
Conread position:
               
441-642
               

               
Cow position:
               
chrX:29553455-29553243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
19, 198
               

               
Conread position:
               
442-652
               

               
Cow position:
               
chrX:32977922-32978129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
162, 16
               

               
Conread position:
               
443-595
               

               
Cow position:
               
chrX:31312196-31312043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
443-612
               

               
Cow position:
               
chrX:5135353-5135526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
443-613
               

               
Cow position:
               
chrX:31829294-31829463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
16, 162
               

               
Conread position:
               
443-661
               

               
Cow position:
               
chrX:6690095-6690318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
443-662
               

               
Cow position:
               
chrX:9365507-9365738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
14, 193
               

               
Conread position:
               
443-662
               

               
Cow position:
               
chrX:13382492-13382267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 107
               

               
Conread position:
               
443-662
               

               
Cow position:
               
chrX:42171131-42171359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 19
               

               
Conread position:
               
443-678
               

               
Cow position:
               
chrX:11084896-11085135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
443-690
               

               
Cow position:
               
chrX:38226945-38227183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
221, 16
               

               
Conread position:
               
444-613
               

               
Cow position:
               
chrX:33151824-33151989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
130, 14
               

               
Conread position:
               
444-647
               

               
Cow position:
               
chrX:28134506-28134299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
445-580
               

               
Cow position:
               
chrX:23574816-23574684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
446-662
               

               
Cow position:
               
chrX:7710375-7710601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
5, 73
               

               
Conread position:
               
447-607
               

               
Cow position:
               
chrX:42160786-42160629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 97
               

               
Conread position:
               
449-614
               

               
Cow position:
               
chrX:25459569-25459739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
61, 100
               

               
Conread position:
               
454-612
               

               
Cow position:
               
chrX:31442675-31442832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 12
               

               
Conread position:
               
454-662
               

               
Cow position:
               
chrX:1615893-1616107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
455-571
               

               
Cow position:
               
chrX:10076125-10076009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
455-662
               

               
Cow position:
               
chrX:41238201-41238414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
151, 94
               

               
Conread position:
               
456-662
               

               
Cow position:
               
chrX:24424250-24424451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
198, 21
               

               
Conread position:
               
456-662
               

               
Cow position:
               
chrX:41068878-41068658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
458-612
               

               
Cow position:
               
chrX:31436625-31436471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
458-613
               

               
Cow position:
               
chrX:6222976-6223132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
458-617
               

               
Cow position:
               
chrX:42506082-42506234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
458-647
               

               
Cow position:
               
chrX:21665089-21665281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
458-650
               

               
Cow position:
               
chrX:22914891-22915086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
148, 57
               

               
Conread position:
               
458-662
               

               
Cow position:
               
chrX:1499816-1499604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
458-662
               

               
Cow position:
               
chrX:8797400-8797190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
110, 106
               

               
Conread position:
               
458-662
               

               
Cow position:
               
chrX:14973595-14973801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
105, 201
               

               
Conread position:
               
458-662
               

               
Cow position:
               
chrX:38728885-38728675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
458-662
               

               
Cow position:
               
chrX:38964259-38964042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
458-690
               

               
Cow position:
               
chrX:27145755-27145532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
196, 147
               

               
Conread position:
               
459-603
               

               
Cow position:
               
chrX:41810018-41810161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
459-612
               

               
Cow position:
               
chrX:14275593-14275746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
459-615
               

               
Cow position:
               
chrX:4645763-4645920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 40
               

               
Conread position:
               
459-623
               

               
Cow position:
               
chrX:23113434-23113271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
459-636
               

               
Cow position:
               
chrX:23188634-23188813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
147, 94
               

               
Conread position:
               
459-643
               

               
Cow position:
               
chrX:23089002-23088821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
136, 84
               

               
Conread position:
               
459-650
               

               
Cow position:
               
chrX:1337142-1337315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
459-652
               

               
Cow position:
               
chrX:23092021-23091816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
74, 179
               

               
Conread position:
               
459-660
               

               
Cow position:
               
chrX:33640125-33639912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
459-662
               

               
Cow position:
               
chrX:15820744-15820534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
150, 77
               

               
Conread position:
               
459-662
               

               
Cow position:
               
chrX:17888273-17888481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
136, 94
               

               
Conread position:
               
459-662
               

               
Cow position:
               
chrX:46433642-46433428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
460-660
               

               
Cow position:
               
chrX:42235376-42235589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
145, 17
               

               
Conread position:
               
461-613
               

               
Cow position:
               
chrX:11762854-11763006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
145, 15
               

               
Conread position:
               
461-661
               

               
Cow position:
               
chrX:5900610-5900407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
143, 96
               

               
Conread position:
               
464-663
               

               
Cow position:
               
chrX:11073047-11073256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
143, 12
               

               
Conread position:
               
466-652
               

               
Cow position:
               
chrX:27511571-27511375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
466-659
               

               
Cow position:
               
chrX:878237-878442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
467-607
               

               
Cow position:
               
chrX:20743746-20743606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
467-636
               

               
Cow position:
               
chrX:3130713-3130537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
140, 9
               

               
Conread position:
               
467-650
               

               
Cow position:
               
chrX:29115848-29115661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
467-662
               

               
Cow position:
               
chrX:29289720-29289516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
468-690
               

               
Cow position:
               
chrX:43779711-43779937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
137, 32
               

               
Conread position:
               
469-612
               

               
Cow position:
               
chrX:19943097-19943237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
469-612
               

               
Cow position:
               
chrX:46429679-46429822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
469-662
               

               
Cow position:
               
chrX:10959255-10959460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
469-662
               

               
Cow position:
               
chrX:17662458-17662656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
136, 79
               

               
Conread position:
               
469-662
               

               
Cow position:
               
chrX:29194370-29194171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
469-666
               

               
Cow position:
               
chrX:25788765-25788962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
156, 128
               

               
Conread position:
               
469-689
               

               
Cow position:
               
chrX:39126466-39126241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
150, 139
               

               
Conread position:
               
469-690
               

               
Cow position:
               
chrX:45113761-45113528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
32, 37
               

               
Conread position:
               
470-614
               

               
Cow position:
               
chrX:24054816-24054666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
470-614
               

               
Cow position:
               
chrX:37119731-37119591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
470-662
               

               
Cow position:
               
chrX:29121185-29120983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
134, 7
               

               
Conread position:
               
470-686
               

               
Cow position:
               
chrX:36514753-36514982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
476-613
               

               
Cow position:
               
chrX:20151989-20151856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
117, 75
               

               
Conread position:
               
476-624
               

               
Cow position:
               
chrX:6850343-6850195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
100, 113
               

               
Conread position:
               
477-605
               

               
Cow position:
               
chrX:20584460-20584332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
477-652
               

               
Cow position:
               
chrX:10411852-10412038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
477-652
               

               
Cow position:
               
chrX:37232539-37232361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
122, 145
               

               
Conread position:
               
478-652
               

               
Cow position:
               
chrX:11851548-11851721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 32
               

               
Conread position:
               
478-662
               

               
Cow position:
               
chrX:917237-917428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
127, 107
               

               
Conread position:
               
478-662
               

               
Cow position:
               
chrX:43568050-43567859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
479-637
               

               
Cow position:
               
chrX:19690345-19690181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
480-652
               

               
Cow position:
               
chrX:25328487-25328658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
129, 96
               

               
Conread position:
               
481-603
               

               
Cow position:
               
chrX:37665819-37665697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
481-648
               

               
Cow position:
               
chrX:13359301-13359467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
126, 100
               

               
Conread position:
               
483-662
               

               
Cow position:
               
chrX:8925824-8925638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
124, 7
               

               
Conread position:
               
487-607
               

               
Cow position:
               
chrX:6213992-6213872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
513-690
               

               
Cow position:
               
chrX:42507552-42507737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
93, 110
               

               
Conread position:
               
522-647
               

               
Cow position:
               
chrX:1572052-1572184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
528-662
               

               
Cow position:
               
chrX:19003374-19003237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
77, 24
               
Show alignments to all cow chromosomes.