Cow genome map
| Conread name: | Ss1.1-rpigca0_001822.5 |
| Conread position: | 2-248 |
| Cow position: | chr14:447552-447799 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 2-250 |
| Cow position: | chr14:3127891-3127642 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 3-264 |
| Cow position: | chr14:3080882-3080620 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 4-245 |
| Cow position: | chr14:3100618-3100378 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 7 |
| Conread position: | 4-245 |
| Cow position: | chr14:3100954-3100714 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 70 |
| Conread position: | 4-252 |
| Cow position: | chr14:25794797-25794548 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 8-248 |
| Cow position: | chr14:25836944-25837181 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 9-234 |
| Cow position: | chr14:25794371-25794147 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 38, 212 |
| Conread position: | 9-245 |
| Cow position: | chr14:25784323-25784559 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-246 |
| Cow position: | chr14:25783987-25784224 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-248 |
| Cow position: | chr14:25783315-25783554 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 150, 165 |
| Conread position: | 9-248 |
| Cow position: | chr14:25795463-25795224 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 167, 158 |
| Conread position: | 9-251 |
| Cow position: | chr14:25836438-25836680 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 5 |
| Conread position: | 9-255 |
| Cow position: | chr14:25795379-25795133 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-216 |
| Cow position: | chr14:3101112-3100909 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 55 |
| Conread position: | 10-245 |
| Cow position: | chr14:680951-681186 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 176, 165 |
| Conread position: | 10-245 |
| Cow position: | chr14:25794622-25794387 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-247 |
| Cow position: | chr14:25783736-25783973 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-247 |
| Cow position: | chr14:25784072-25784309 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 141, 161 |
| Conread position: | 10-247 |
| Cow position: | chr14:25784492-25784729 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-247 |
| Cow position: | chr14:25794874-25794637 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 166, 157 |
| Conread position: | 10-248 |
| Cow position: | chr14:25783904-25784142 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-248 |
| Cow position: | chr14:25784240-25784478 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-250 |
| Cow position: | chr14:3127630-3127390 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-250 |
| Cow position: | chr14:3155465-3155705 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 78, 74 |
| Conread position: | 10-250 |
| Cow position: | chr14:3155549-3155789 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 160, 164 |
| Conread position: | 10-252 |
| Cow position: | chr14:25783400-25783642 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 10-252 |
| Cow position: | chr14:25783568-25783810 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-252 |
| Cow position: | chr14:25783820-25784062 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 147, 161 |
| Conread position: | 10-252 |
| Cow position: | chr14:25784156-25784398 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-252 |
| Cow position: | chr14:25784408-25784650 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 166, 155 |
| Conread position: | 10-255 |
| Cow position: | chr14:25795210-25794965 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 11-255 |
| Cow position: | chr14:25794705-25794461 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 85, 77 |
| Conread position: | 15-245 |
| Cow position: | chr14:25794953-25794723 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-250 |
| Cow position: | chr14:3080029-3079794 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-250 |
| Cow position: | chr14:3101275-3101041 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 15-263 |
| Cow position: | chr14:3156127-3156375 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-245 |
| Cow position: | chr14:3127708-3127479 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-248 |
| Cow position: | chr14:3101441-3101210 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 67, 76 |
| Conread position: | 18-246 |
| Cow position: | chr14:3155389-3155617 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-246 |
| Cow position: | chr14:3155878-3156106 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-248 |
| Cow position: | chr14:25795286-25795056 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 66 |
| Conread position: | 21-246 |
| Cow position: | chr14:25783495-25783720 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-248 |
| Cow position: | chr14:25795031-25794804 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-248 |
| Cow position: | chr14:25836366-25836593 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-248 |
| Cow position: | chr14:25876890-25877117 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 21-251 |
| Cow position: | chr14:3156217-3156447 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 61 |
| Conread position: | 21-251 |
| Cow position: | chr14:25836198-25836428 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-245 |
| Cow position: | chr14:680711-680934 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 149, 155 |
| Conread position: | 22-245 |
| Cow position: | chr14:3127534-3127311 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 22-246 |
| Cow position: | chr14:680795-681019 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 22-248 |
| Cow position: | chr14:25876807-25877033 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 72, 63 |
| Conread position: | 22-249 |
| Cow position: | chr14:3156050-3156277 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-250 |
| Cow position: | chr14:447657-447885 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-250 |
| Cow position: | chr14:681047-681275 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-250 |
| Cow position: | chr14:3080106-3079878 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-250 |
| Cow position: | chr14:3080610-3080382 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 74, 63 |
| Conread position: | 22-251 |
| Cow position: | chr14:3080190-3079961 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-247 |
| Cow position: | chr14:25860263-25860485 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 25-247 |
| Cow position: | chr14:25877314-25877536 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 132, 139 |
| Conread position: | 25-252 |
| Cow position: | chr14:25836286-25836513 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-252 |
| Cow position: | chr14:25794521-25794295 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 68, 61 |
| Conread position: | 33-250 |
| Cow position: | chr14:3155977-3156194 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 37-245 |
| Cow position: | chr14:25876570-25876778 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 120, 124 |
| Conread position: | 37-248 |
| Cow position: | chr14:25836550-25836761 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-250 |
| Cow position: | chr14:3127771-3127558 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 41-250 |
| Cow position: | chr14:3155331-3155537 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 42-253 |
| Cow position: | chr14:25794422-25794210 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
Show alignments to all cow chromosomes.