Cow genome map

Conread name: Ss1.1-rpigca0_001822.5

Conread position: 3-246
Cow position: chr22:12399461-12399217 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 7, 85

Conread position: 4-245
Cow position: chr22:12399874-12399638 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 11, 27

Conread position: 4-248
Cow position: chr22:12399796-12399551 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 8, 0

Conread position: 5-245
Cow position: chr22:11641075-11641316 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 12, 66

Conread position: 5-248
Cow position: chr22:11641159-11641403 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 161
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 174

Conread position: 5-248
Cow position: chr22:12431355-12431111 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 14, 0

Conread position: 6-245
Cow position: chr22:12418892-12418653 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 6-250
Cow position: chr22:12498837-12499081 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 90, 79

Conread position: 8-236
Cow position: chr22:12399707-12399479 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 9-213
Cow position: chr22:12457966-12457762 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 139
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 87, 76

Conread position: 9-239
Cow position: chr22:12399622-12399392 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 151, 165

Conread position: 9-245
Cow position: chr22:12475915-12475679 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 85, 76

Conread position: 9-245
Cow position: chr22:12499428-12499664 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 86, 76

Conread position: 9-246
Cow position: chr22:12499596-12499833 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 9-247
Cow position: chr22:12458218-12457980 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 159, 169

Conread position: 9-247
Cow position: chr22:12475831-12475593 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 162
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 9-248
Cow position: chr22:12499344-12499583 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 81, 75

Conread position: 9-248
Cow position: chr22:14429868-14430107 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 181, 157

Conread position: 9-269
Cow position: chr22:12385530-12385264 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 71, 86

Conread position: 10-209
Cow position: chr22:12385107-12384908 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 10-235
Cow position: chr22:12385275-12385050 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 86, 75

Conread position: 10-235
Cow position: chr22:12430845-12430620 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 10-244
Cow position: chr22:12458049-12457815 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 10-245
Cow position: chr22:11666669-11666905 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 159
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 98

Conread position: 10-245
Cow position: chr22:12385359-12385124 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 80, 75

Conread position: 10-245
Cow position: chr22:12431685-12431450 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 154
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 149, 165

Conread position: 10-248
Cow position: chr22:12475746-12475508 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 84, 74

Conread position: 10-250
Cow position: chr22:11701323-11701564 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 160
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 5, 76

Conread position: 10-264
Cow position: chr22:12399285-12399031 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 12-250
Cow position: chr22:12419323-12419085 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 160
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 14-245
Cow position: chr22:12399365-12399134 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 168
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 14-245
Cow position: chr22:12432270-12432038 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 153
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 14-246
Cow position: chr22:12399197-12398965 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 14-263
Cow position: chr22:12399029-12398780 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 15-245
Cow position: chr22:12476161-12475931 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 80, 70

Conread position: 15-245
Cow position: chr22:12476243-12476015 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 12, 0

Conread position: 15-245
Cow position: chr22:12499098-12499328 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 136, 149

Conread position: 15-246
Cow position: chr22:12399532-12399301 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 173
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 149, 158

Conread position: 15-248
Cow position: chr22:11640834-11641067 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 156
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 144, 159

Conread position: 15-248
Cow position: chr22:11641001-11641235 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 7, 0

Conread position: 15-248
Cow position: chr22:12475657-12475424 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 15-251
Cow position: chr22:12499016-12499250 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 12, 0

Conread position: 16-245
Cow position: chr22:46654494-46654723 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 149
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 16-249
Cow position: chr22:11640667-11640900 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 157
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 25, 19

Conread position: 17-246
Cow position: chr22:12385690-12385461 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 156
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 26, 20

Conread position: 17-247
Cow position: chr22:12431258-12431028 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 17-250
Cow position: chr22:12476411-12476178 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 79, 68

Conread position: 18-216
Cow position: chr22:11641257-11641455 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 132
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 18-217
Cow position: chr22:12475486-12475287 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 77, 68

Conread position: 18-217
Cow position: chr22:12499773-12499972 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 135
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 164, 157

Conread position: 18-239
Cow position: chr22:12431173-12430952 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 18-245
Cow position: chr22:12498933-12499160 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 75, 67

Conread position: 18-248
Cow position: chr22:12431593-12431363 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 171, 158

Conread position: 18-264
Cow position: chr22:46654160-46654406 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 64, 74

Conread position: 18-266
Cow position: chr22:14467954-14468202 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 160
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 21-245
Cow position: chr22:11640924-11641148 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 84, 70

Conread position: 21-245
Cow position: chr22:12432430-12432206 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 70, 81

Conread position: 21-245
Cow position: chr22:12458290-12458066 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 150
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 73, 65

Conread position: 21-245
Cow position: chr22:12475987-12475763 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 21-245
Cow position: chr22:12499272-12499496 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 21-248
Cow position: chr22:12430918-12430691 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 146, 156

Conread position: 21-248
Cow position: chr22:12431086-12430859 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 21-248
Cow position: chr22:12458122-12457895 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 21-248
Cow position: chr22:12475567-12475340 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 21-248
Cow position: chr22:12499692-12499919 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 75, 67

Conread position: 21-250
Cow position: chr22:12476323-12476094 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 74, 64

Conread position: 21-251
Cow position: chr22:11701167-11701397 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 60, 77

Conread position: 21-251
Cow position: chr22:12458458-12458228 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 22-239
Cow position: chr22:12431841-12431624 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 148
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 22-239
Cow position: chr22:12458373-12458156 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 74, 63

Conread position: 22-240
Cow position: chr22:12432009-12431791 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 79, 63

Conread position: 22-245
Cow position: chr22:11701420-11701643 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 148
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 159, 149

Conread position: 22-245
Cow position: chr22:12418792-12418569 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 166, 159

Conread position: 22-247
Cow position: chr22:11640757-11640982 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 103, 89

Conread position: 22-248
Cow position: chr22:12418960-12418734 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 22-251
Cow position: chr22:12476070-12475841 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 22-251
Cow position: chr22:12499189-12499418 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 74, 63

Conread position: 23-246
Cow position: chr22:12431504-12431282 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 65, 60

Conread position: 23-246
Cow position: chr22:12431756-12431533 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 73, 62

Conread position: 23-263
Cow position: chr22:12458624-12458384 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 162
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 73, 63

Conread position: 24-246
Cow position: chr22:14468044-14468266 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 67

Conread position: 24-248
Cow position: chr22:12385177-12384953 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 152
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 24-248
Cow position: chr22:14468296-14468520 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 73, 63

Conread position: 24-249
Cow position: chr22:14429715-14429940 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 152
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 70, 62

Conread position: 25-249
Cow position: chr22:14429800-14430024 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 174, 141

Conread position: 26-251
Cow position: chr22:12458537-12458312 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 28-247
Cow position: chr22:46654422-46654641 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 36-245
Cow position: chr22:14430063-14430272 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 54, 73

Conread position: 36-246
Cow position: chr22:12432163-12431953 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 60, 49

Conread position: 93-248
Cow position: chr22:12476419-12476264 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.