Cow genome map
| Conread name: | Ss1.1-rpigca0_001822.5 |
| Conread position: | 2-250 |
| Cow position: | chr25:34770079-34769830 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 3-245 |
| Cow position: | chr25:36801589-36801832 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 83 |
| Conread position: | 3-251 |
| Cow position: | chr25:23420345-23420594 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 7, 91 |
| Conread position: | 4-212 |
| Cow position: | chr25:34769405-34769196 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 4-245 |
| Cow position: | chr25:34769993-34769751 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-250 |
| Cow position: | chr25:33145061-33145308 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 161 |
| Conread position: | 5-245 |
| Cow position: | chr25:33299115-33299356 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 95 |
| Conread position: | 5-250 |
| Cow position: | chr25:23420515-23420761 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 5-251 |
| Cow position: | chr25:34447490-34447735 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 213 |
| Conread position: | 9-191 |
| Cow position: | chr25:23420688-23420870 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 9-242 |
| Cow position: | chr25:33299624-33299853 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 68 |
| Conread position: | 9-250 |
| Cow position: | chr25:34447075-34447316 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-250 |
| Cow position: | chr25:34769567-34769326 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-269 |
| Cow position: | chr25:34732555-34732291 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 86 |
| Conread position: | 10-248 |
| Cow position: | chr25:34769734-34769496 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-248 |
| Cow position: | chr25:34769902-34769664 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-249 |
| Cow position: | chr25:33157335-33157096 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 162, 168 |
| Conread position: | 10-249 |
| Cow position: | chr25:34714172-34714411 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 93, 89 |
| Conread position: | 10-250 |
| Cow position: | chr25:23420437-23420677 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 10-250 |
| Cow position: | chr25:23420605-23420845 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 84, 75 |
| Conread position: | 10-250 |
| Cow position: | chr25:33127772-33128012 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-250 |
| Cow position: | chr25:34769650-34769410 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 174, 157 |
| Conread position: | 10-251 |
| Cow position: | chr25:34446992-34447233 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 82, 76 |
| Conread position: | 14-236 |
| Cow position: | chr25:33157163-33156941 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 74, 69 |
| Conread position: | 14-245 |
| Cow position: | chr25:33305906-33305681 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 150, 63 |
| Conread position: | 14-248 |
| Cow position: | chr25:33144907-33145138 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 210, 132 |
| Conread position: | 15-229 |
| Cow position: | chr25:33156994-33156781 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 15-248 |
| Cow position: | chr25:33157078-33156845 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 138, 149 |
| Conread position: | 15-249 |
| Cow position: | chr25:33157414-33157180 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-251 |
| Cow position: | chr25:33298790-33299026 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-244 |
| Cow position: | chr25:36800859-36801087 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-251 |
| Cow position: | chr25:34447166-34447401 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-239 |
| Cow position: | chr25:33305258-33305039 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 214, 150 |
| Conread position: | 17-248 |
| Cow position: | chr25:34770147-34769916 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 17-250 |
| Cow position: | chr25:34433501-34433731 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 17-264 |
| Cow position: | chr25:34447335-34447582 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-239 |
| Cow position: | chr25:36801689-36801910 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 59 |
| Conread position: | 18-245 |
| Cow position: | chr25:33299465-33299692 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 78, 67 |
| Conread position: | 18-248 |
| Cow position: | chr25:34447252-34447482 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-250 |
| Cow position: | chr25:33299297-33299529 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-250 |
| Cow position: | chr25:36800693-36800925 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-269 |
| Cow position: | chr25:33305340-33305090 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 21-245 |
| Cow position: | chr25:33298712-33298936 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-251 |
| Cow position: | chr25:33127951-33128181 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-263 |
| Cow position: | chr25:33127867-33128109 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 22-239 |
| Cow position: | chr25:33299553-33299770 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 22-245 |
| Cow position: | chr25:33298881-33299104 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 146, 156 |
| Conread position: | 22-245 |
| Cow position: | chr25:33299217-33299440 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-245 |
| Cow position: | chr25:33306315-33306098 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 26 |
| Conread position: | 22-248 |
| Cow position: | chr25:34769470-34769244 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-248 |
| Cow position: | chr25:34769806-34769580 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-250 |
| Cow position: | chr25:33298629-33298857 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-270 |
| Cow position: | chr25:33299049-33299297 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 225, 236 |
| Conread position: | 23-252 |
| Cow position: | chr25:34433003-34433233 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 223, 0 |
| Conread position: | 24-239 |
| Cow position: | chr25:33299387-33299602 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 24-250 |
| Cow position: | chr25:33157237-33157011 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 148, 154 |
| Conread position: | 26-245 |
| Cow position: | chr25:33145168-33145387 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-245 |
| Cow position: | chr25:34446927-34447143 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 55 |
| Conread position: | 37-248 |
| Cow position: | chr25:34732611-34732400 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-249 |
| Cow position: | chr25:33157474-33157264 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 39-245 |
| Cow position: | chr25:36801542-36801748 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-245 |
| Cow position: | chr25:36800799-36801004 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-250 |
| Cow position: | chr25:33298479-33298689 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 79 |
| Conread position: | 43-251 |
| Cow position: | chr25:34714037-34714245 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 42 |
| Conread position: | 57-245 |
| Cow position: | chr25:23420316-23420504 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-250 |
| Cow position: | chr25:33157503-33157347 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 76 |
Show alignments to all cow chromosomes.