Cow genome map
| Conread name: | Ss1.1-rpigca0_001822.5 |
| Conread position: | 7-246 |
| Cow position: | chr28:9299274-9299511 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 8-264 |
| Cow position: | chr28:9299119-9299361 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 9-227 |
| Cow position: | chr28:7810728-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-239 |
| Cow position: | chr28:9252988-9253218 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-245 |
| Cow position: | chr28:9253156-9253392 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 13, 7 |
| Conread position: | 9-250 |
| Cow position: | chr28:7757889-7758130 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-250 |
| Cow position: | chr28:33210281-33210522 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 53 |
| Conread position: | 10-248 |
| Cow position: | chr28:34679588-34679354 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 14-202 |
| Cow position: | chr28:7758146-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-239 |
| Cow position: | chr28:7757558-7757783 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-246 |
| Cow position: | chr28:7757474-7757706 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-250 |
| Cow position: | chr28:9253077-9253313 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-216 |
| Cow position: | chr28:33210455-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 76, 70 |
| Conread position: | 16-250 |
| Cow position: | chr28:7757392-7757626 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-224 |
| Cow position: | chr28:7810325-7810532 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 77, 59 |
| Conread position: | 17-245 |
| Cow position: | chr28:7810409-7810628 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 17-245 |
| Cow position: | chr28:9253248-9253476 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-246 |
| Cow position: | chr28:9252911-9253141 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 18-219 |
| Cow position: | chr28:9253417-9253619 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 18-239 |
| Cow position: | chr28:7758554-7758775 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-248 |
| Cow position: | chr28:9253333-9253563 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 74, 64 |
| Conread position: | 18-249 |
| Cow position: | chr28:7757814-7758045 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-249 |
| Cow position: | chr28:9290314-9290543 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 18-250 |
| Cow position: | chr28:7758066-7758298 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 133, 150 |
| Conread position: | 21-239 |
| Cow position: | chr28:7757985-7758203 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 21-239 |
| Cow position: | chr28:7810656-7810874 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 73, 55 |
| Conread position: | 21-244 |
| Cow position: | chr28:9290400-9290622 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 149, 65 |
| Conread position: | 21-245 |
| Cow position: | chr28:9298882-9299104 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 74, 62 |
| Conread position: | 21-250 |
| Cow position: | chr28:11333820-11333591 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-252 |
| Cow position: | chr28:7758389-7758620 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 71, 61 |
| Conread position: | 22-239 |
| Cow position: | chr28:11333903-11333686 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-245 |
| Cow position: | chr28:7757650-7757873 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-250 |
| Cow position: | chr28:33210389-33210607 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 37-269 |
| Cow position: | chr28:34696329-34696561 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 150, 138 |
| Conread position: | 59-248 |
| Cow position: | chr28:7810283-7810472 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-239 |
| Cow position: | chr28:7757380-7757531 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.