Cow genome map
| Conread name: | Ss1.1-rpigca0_001822.5 |
| Conread position: | 4-231 |
| Cow position: | chr8:48406995-48406767 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 4-245 |
| Cow position: | chr8:55581205-55581447 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 4-248 |
| Cow position: | chr8:55580953-55581198 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 4-250 |
| Cow position: | chr8:48407581-48407336 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 88, 7 |
| Conread position: | 4-251 |
| Cow position: | chr8:48406657-48406411 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 5-239 |
| Cow position: | chr8:45200982-45201217 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 5-253 |
| Cow position: | chr8:55581122-55581371 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 8-248 |
| Cow position: | chr8:48407494-48407254 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 9-248 |
| Cow position: | chr8:48407073-48406834 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 159, 168 |
| Conread position: | 9-251 |
| Cow position: | chr8:48406821-48406579 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 60, 78 |
| Conread position: | 9-297 |
| Cow position: | chr8:48406485-48406200 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 161, 169 |
| Conread position: | 10-205 |
| Cow position: | chr8:6958026-6957831 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 10-248 |
| Cow position: | chr8:48407156-48406918 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 82, 72 |
| Conread position: | 10-248 |
| Cow position: | chr8:48407324-48407086 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 148, 170 |
| Conread position: | 10-248 |
| Cow position: | chr8:55581296-55581534 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 149, 162 |
| Conread position: | 12-251 |
| Cow position: | chr8:46815929-46816172 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 12, 171 |
| Conread position: | 15-247 |
| Cow position: | chr8:46817112-46817344 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-239 |
| Cow position: | chr8:45201751-45201973 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-245 |
| Cow position: | chr8:46816442-46816670 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 17-248 |
| Cow position: | chr8:55581051-55581282 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 17-250 |
| Cow position: | chr8:45201079-45201312 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-251 |
| Cow position: | chr8:48407233-48406999 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 18-239 |
| Cow position: | chr8:46816527-46816748 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-245 |
| Cow position: | chr8:45201164-45201391 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-246 |
| Cow position: | chr8:46816779-46817007 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 150, 156 |
| Conread position: | 18-247 |
| Cow position: | chr8:46816191-46816420 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-248 |
| Cow position: | chr8:45201500-45201730 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-248 |
| Cow position: | chr8:45201668-45201898 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-250 |
| Cow position: | chr8:45201248-45201480 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-250 |
| Cow position: | chr8:45201584-45201816 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-263 |
| Cow position: | chr8:48407400-48407155 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-270 |
| Cow position: | chr8:46816695-46816947 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 74, 56 |
| Conread position: | 21-239 |
| Cow position: | chr8:46816278-46816496 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-245 |
| Cow position: | chr8:46816110-46816334 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-245 |
| Cow position: | chr8:46817034-46817258 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-245 |
| Cow position: | chr8:55581475-55581699 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 21-250 |
| Cow position: | chr8:45201335-45201564 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 21-251 |
| Cow position: | chr8:55581391-55581621 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 22-245 |
| Cow position: | chr8:46816615-46816838 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-247 |
| Cow position: | chr8:46816363-46816588 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-250 |
| Cow position: | chr8:46816867-46817095 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 146, 157 |
| Conread position: | 24-248 |
| Cow position: | chr8:55580890-55581114 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-247 |
| Cow position: | chr8:46816952-46817176 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 36-247 |
| Cow position: | chr8:46816041-46816252 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 42-248 |
| Cow position: | chr8:45200936-45201142 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 50, 39 |
Show alignments to all cow chromosomes.