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Cow genome map

           
Conread name:
           
Ss1.1-rpigca0_007986.5
        

               
Conread position:
               
1-161
               

               
Cow position:
               
chr1:28722982-28722823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:58883958-58884121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr1:77117481-77117681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:73070947-73071187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr1:48245921-48245669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:23050946-23050673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
41, 31
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:44101638-44101913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
250, 111
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr1:37419654-37419916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
15, 66
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr1:99911068-99910783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
118, 25
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:7144334-7144634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
143, 61
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:72080888-72080558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr1:72136749-72136418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 69
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr1:53045679-53046025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 24
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:99375070-99374714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
277, 61
               

               
Conread position:
               
1-371
               

               
Cow position:
               
chr1:87969460-87969091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr1:38385178-38385560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
1-470
               

               
Cow position:
               
chr1:25887055-25887497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 60
               

               
Conread position:
               
1-474
               

               
Cow position:
               
chr1:19992573-19993044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
130, 61
               

               
Conread position:
               
1-486
               

               
Cow position:
               
chr1:63501563-63501079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 61
               

               
Conread position:
               
1-486
               

               
Cow position:
               
chr1:89740154-89740610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 50
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr1:85533305-85533778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
1-508
               

               
Cow position:
               
chr1:62244538-62245056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 69
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chr1:72981376-72980872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 38
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chr1:42736562-42736046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 58
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chr1:57568060-57567539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 69
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chr1:67286600-67286098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 139
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chr1:76545429-76545950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 61
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chr1:58335944-58335424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 35
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chr1:79636821-79637343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:3385897-3386419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:8825160-8824653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
371, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:18244275-18244788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:25179921-25180444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:28873183-28872664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:29950211-29950715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
266, 75
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:30027436-30027937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 70
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:33551028-33550510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:49974081-49974601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:56193822-56194344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:57656654-57656146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
354, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:63605672-63606196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:68607434-68607961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:69403098-69402580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:69922356-69922876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:72186763-72187284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:76622848-76623358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
359, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:76752544-76753062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:79335695-79336207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:85780671-85781193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 21
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:86699108-86699633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:88130880-88130348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:93854630-93854108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 69
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr1:97226596-97227116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 69
               

               
Conread position:
               
1-516
               

               
Cow position:
               
chr1:34689449-34688942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 8
               

               
Conread position:
               
2-122
               

               
Cow position:
               
chr1:55322948-55323065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
2-278
               

               
Cow position:
               
chr1:39481874-39482145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chr1:11863135-11863403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
2-431
               

               
Cow position:
               
chr1:13880245-13879810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 68
               

               
Conread position:
               
2-513
               

               
Cow position:
               
chr1:55776259-55775748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 26
               

               
Conread position:
               
2-515
               

               
Cow position:
               
chr1:100597265-100597795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 68
               

               
Conread position:
               
3-156
               

               
Cow position:
               
chr1:40574323-40574171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr1:29362404-29362204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chr1:60339413-60339210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr1:13450316-13450043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr1:15347477-15347752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr1:28711024-28710723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 67
               

               
Conread position:
               
3-305
               

               
Cow position:
               
chr1:30283434-30283730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 67
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr1:56723263-56722916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 67
               

               
Conread position:
               
3-386
               

               
Cow position:
               
chr1:87207320-87207687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
346, 67
               

               
Conread position:
               
3-420
               

               
Cow position:
               
chr1:40308170-40307755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 55
               

               
Conread position:
               
3-438
               

               
Cow position:
               
chr1:33851386-33850946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 67
               

               
Conread position:
               
3-438
               

               
Cow position:
               
chr1:33895787-33895344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 67
               

               
Conread position:
               
3-471
               

               
Cow position:
               
chr1:45097804-45097358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 69
               

               
Conread position:
               
3-478
               

               
Cow position:
               
chr1:91899106-91898633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 67
               

               
Conread position:
               
3-478
               

               
Cow position:
               
chr1:101149940-101149468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
376, 69
               

               
Conread position:
               
3-479
               

               
Cow position:
               
chr1:40684583-40685060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 67
               

               
Conread position:
               
3-484
               

               
Cow position:
               
chr1:89770577-89771056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 73
               

               
Conread position:
               
3-486
               

               
Cow position:
               
chr1:8554436-8553946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 67
               

               
Conread position:
               
3-486
               

               
Cow position:
               
chr1:18406088-18406580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 50
               

               
Conread position:
               
3-486
               

               
Cow position:
               
chr1:18880285-18880767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
366, 67
               

               
Conread position:
               
3-486
               

               
Cow position:
               
chr1:61309110-61308629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 67
               

               
Conread position:
               
3-486
               

               
Cow position:
               
chr1:69766570-69766090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 67
               

               
Conread position:
               
3-486
               

               
Cow position:
               
chr1:82918554-82919031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 67
               

               
Conread position:
               
3-487
               

               
Cow position:
               
chr1:13645821-13645339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 61
               

               
Conread position:
               
3-487
               

               
Cow position:
               
chr1:28801311-28801809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 67
               

               
Conread position:
               
3-487
               

               
Cow position:
               
chr1:33712171-33711678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 67
               

               
Conread position:
               
3-487
               

               
Cow position:
               
chr1:38414908-38414431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 67
               

               
Conread position:
               
3-487
               

               
Cow position:
               
chr1:72657094-72656600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 36
               

               
Conread position:
               
3-487
               

               
Cow position:
               
chr1:88635479-88634995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
342, 67
               

               
Conread position:
               
3-496
               

               
Cow position:
               
chr1:101857876-101858371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 73
               

               
Conread position:
               
3-499
               

               
Cow position:
               
chr1:89899594-89900092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 68
               

               
Conread position:
               
3-500
               

               
Cow position:
               
chr1:42290495-42290007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 67
               

               
Conread position:
               
3-506
               

               
Cow position:
               
chr1:20828997-20828490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 67
               

               
Conread position:
               
3-506
               

               
Cow position:
               
chr1:39543876-39543370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 11
               

               
Conread position:
               
3-506
               

               
Cow position:
               
chr1:59210031-59210535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 67
               

               
Conread position:
               
3-506
               

               
Cow position:
               
chr1:67835032-67835532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 67
               

               
Conread position:
               
3-506
               

               
Cow position:
               
chr1:71562466-71562968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 158
               

               
Conread position:
               
3-506
               

               
Cow position:
               
chr1:91718530-91719038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 31
               

               
Conread position:
               
3-513
               

               
Cow position:
               
chr1:52233008-52233511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
344, 57
               

               
Conread position:
               
3-513
               

               
Cow position:
               
chr1:62925721-62925201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 67
               

               
Conread position:
               
3-514
               

               
Cow position:
               
chr1:1461223-1461737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 50
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:11291998-11292517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:17012631-17013149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 31
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:25550164-25549650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 52
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:31365969-31366491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 73
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:40053463-40052946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 67
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:55276378-55276892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 67
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:56163434-56162918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
365, 67
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:56489948-56489434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 67
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:57367025-57367545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 67
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:79456865-79457380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 36
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:79920619-79921140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 67
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:80359071-80359578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
366, 67
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:82564611-82564094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 67
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:82652761-82652231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 67
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:85791794-85791285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 67
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:86548027-86548535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
485, 67
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:89425695-89425177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 67
               

               
Conread position:
               
3-515
               

               
Cow position:
               
chr1:102434931-102435441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 73
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr1:12062090-12062357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
119, 66
               

               
Conread position:
               
4-486
               

               
Cow position:
               
chr1:17036451-17036933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 66
               

               
Conread position:
               
4-486
               

               
Cow position:
               
chr1:62853738-62854209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
366, 67
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr1:77112344-77112651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
166, 62
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr1:82355826-82355508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
182, 57
               

               
Conread position:
               
5-350
               

               
Cow position:
               
chr1:82407240-82407579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
144, 6
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr1:98784156-98783810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
264, 72
               

               
Conread position:
               
5-366
               

               
Cow position:
               
chr1:52359170-52359534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 65
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr1:56144231-56144652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 58
               

               
Conread position:
               
5-470
               

               
Cow position:
               
chr1:52918512-52918973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 144
               

               
Conread position:
               
5-487
               

               
Cow position:
               
chr1:87244916-87244416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 169
               

               
Conread position:
               
5-515
               

               
Cow position:
               
chr1:18014084-18014603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
21, 69
               

               
Conread position:
               
5-515
               

               
Cow position:
               
chr1:21999850-22000365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 65
               

               
Conread position:
               
5-515
               

               
Cow position:
               
chr1:77163871-77163368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
5-515
               

               
Cow position:
               
chr1:86609294-86608791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
356, 71
               

               
Conread position:
               
6-480
               

               
Cow position:
               
chr1:96246391-96246849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
207, 23
               

               
Conread position:
               
6-504
               

               
Cow position:
               
chr1:69287463-69287958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
350, 66
               

               
Conread position:
               
6-515
               

               
Cow position:
               
chr1:99020855-99021365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
7-453
               

               
Cow position:
               
chr1:54365720-54366161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
409, 63
               

               
Conread position:
               
7-475
               

               
Cow position:
               
chr1:69537003-69536532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 48
               

               
Conread position:
               
7-486
               

               
Cow position:
               
chr1:5318850-5318386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
271, 50
               

               
Conread position:
               
7-486
               

               
Cow position:
               
chr1:21087517-21087026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 63
               

               
Conread position:
               
7-512
               

               
Cow position:
               
chr1:28276743-28276241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
119, 44
               

               
Conread position:
               
7-513
               

               
Cow position:
               
chr1:84149525-84149006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 165
               

               
Conread position:
               
9-478
               

               
Cow position:
               
chr1:31330687-31331154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
180, 30
               

               
Conread position:
               
12-508
               

               
Cow position:
               
chr1:62805707-62806207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 58
               

               
Conread position:
               
15-479
               

               
Cow position:
               
chr1:30058636-30058178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 61
               

               
Conread position:
               
16-515
               

               
Cow position:
               
chr1:17941716-17942225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 54
               

               
Conread position:
               
17-486
               

               
Cow position:
               
chr1:35155773-35156235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
253, 22
               

               
Conread position:
               
18-463
               

               
Cow position:
               
chr1:59674573-59674130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 42
               

               
Conread position:
               
21-499
               

               
Cow position:
               
chr1:97123907-97123442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 11
               

               
Conread position:
               
28-515
               

               
Cow position:
               
chr1:40513419-40513900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 20
               

               
Conread position:
               
32-370
               

               
Cow position:
               
chr1:102549305-102548969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 38
               

               
Conread position:
               
35-486
               

               
Cow position:
               
chr1:6708019-6708472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 22
               

               
Conread position:
               
48-486
               

               
Cow position:
               
chr1:40953762-40953328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 22
               

               
Conread position:
               
70-457
               

               
Cow position:
               
chr1:78360225-78359845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
236, 22
               

               
Conread position:
               
73-515
               

               
Cow position:
               
chr1:98661258-98661702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 42
               

               
Conread position:
               
80-492
               

               
Cow position:
               
chr1:89809590-89810015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 87
               

               
Conread position:
               
82-486
               

               
Cow position:
               
chr1:76703351-76703749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
91-515
               

               
Cow position:
               
chr1:5501996-5501565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 59
               

               
Conread position:
               
92-515
               

               
Cow position:
               
chr1:13253418-13253844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 74
               

               
Conread position:
               
94-370
               

               
Cow position:
               
chr1:78289899-78289622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
174, 64
               

               
Conread position:
               
97-468
               

               
Cow position:
               
chr1:38387633-38387983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
12, 35
               

               
Conread position:
               
98-282
               

               
Cow position:
               
chr1:79884816-79884997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
99-359
               

               
Cow position:
               
chr1:22863905-22864166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 59
               

               
Conread position:
               
114-513
               

               
Cow position:
               
chr1:85881741-85881340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 45
               

               
Conread position:
               
129-349
               

               
Cow position:
               
chr1:61733237-61733024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
135-515
               

               
Cow position:
               
chr1:43020100-43019715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 23
               

               
Conread position:
               
137-515
               

               
Cow position:
               
chr1:31396388-31396010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
351, 21
               

               
Conread position:
               
177-368
               

               
Cow position:
               
chr1:99349081-99349275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
181-372
               

               
Cow position:
               
chr1:89478969-89478784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
184, 89
               

               
Conread position:
               
181-512
               

               
Cow position:
               
chr1:55323587-55323925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 144
               

               
Conread position:
               
181-516
               

               
Cow position:
               
chr1:102556018-102555682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
183-515
               

               
Cow position:
               
chr1:87449884-87449540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
194-371
               

               
Cow position:
               
chr1:29361928-29361748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
200-506
               

               
Cow position:
               
chr1:67902508-67902828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
161, 73
               

               
Conread position:
               
203-486
               

               
Cow position:
               
chr1:53198704-53198410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
203-505
               

               
Cow position:
               
chr1:20988671-20988366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
78, 164
               

               
Conread position:
               
205-326
               

               
Cow position:
               
chr1:101725970-101725846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
210-515
               

               
Cow position:
               
chr1:30023287-30023604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
212-515
               

               
Cow position:
               
chr1:42176498-42176792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
250, 61
               

               
Conread position:
               
224-478
               

               
Cow position:
               
chr1:28722682-28722418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
224-506
               

               
Cow position:
               
chr1:8330133-8330420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
232-505
               

               
Cow position:
               
chr1:72120034-72119751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
45, 175
               

               
Conread position:
               
232-515
               

               
Cow position:
               
chr1:52172589-52172884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
240-515
               

               
Cow position:
               
chr1:88759441-88759153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
259-516
               

               
Cow position:
               
chr1:58224147-58223889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
211, 227
               

               
Conread position:
               
260-485
               

               
Cow position:
               
chr1:29904214-29904438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
100, 92
               

               
Conread position:
               
262-515
               

               
Cow position:
               
chr1:99995245-99995506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
100, 11
               

               
Conread position:
               
273-515
               

               
Cow position:
               
chr1:73071180-73071430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
276-515
               

               
Cow position:
               
chr1:8027306-8027555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
277-514
               

               
Cow position:
               
chr1:37420140-37420379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
84, 43
               

               
Conread position:
               
278-515
               

               
Cow position:
               
chr1:13450024-13449778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
288-507
               

               
Cow position:
               
chr1:11863439-11863670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 220
               

               
Conread position:
               
294-514
               

               
Cow position:
               
chr1:97560534-97560306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 119
               

               
Conread position:
               
298-514
               

               
Cow position:
               
chr1:3934352-3934565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
195, 48
               

               
Conread position:
               
302-515
               

               
Cow position:
               
chr1:30283794-30284007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
198, 183
               

               
Conread position:
               
324-507
               

               
Cow position:
               
chr1:72080265-72080073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
332-515
               

               
Cow position:
               
chr1:94659656-94659464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
349-488
               

               
Cow position:
               
chr1:102548961-102548823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               
Show alignments to all cow chromosomes.