Cow genome map

Conread name: Ss1.1-rpigca0_007986.5

Conread position: 1-168
Cow position: chr10:40152321-40152488 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 151, 60

Conread position: 1-169
Cow position: chr10:34318158-34318323 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 1-233
Cow position: chr10:16925669-16925439 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 80, 60

Conread position: 1-340
Cow position: chr10:47063547-47063215 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 212
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 77

Conread position: 1-439
Cow position: chr10:24978003-24978445 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 305
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 118, 54

Conread position: 1-480
Cow position: chr10:63833685-63833231 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 301
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 373, 36

Conread position: 1-498
Cow position: chr10:25359532-25359031 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-506
Cow position: chr10:28116302-28116810 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 336
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 141, 47

Conread position: 1-512
Cow position: chr10:21487047-21486530 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 69

Conread position: 1-514
Cow position: chr10:19511739-19511225 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 69

Conread position: 1-515
Cow position: chr10:124443-123929 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 69

Conread position: 1-515
Cow position: chr10:1375664-1375148 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position: chr10:4499815-4499328 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 20

Conread position: 1-515
Cow position: chr10:8290116-8289580 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 69

Conread position: 1-515
Cow position: chr10:22101365-22100854 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position: chr10:24298721-24299236 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 69

Conread position: 1-515
Cow position: chr10:32650866-32650352 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 69

Conread position: 1-515
Cow position: chr10:38538364-38538879 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 371, 69

Conread position: 1-515
Cow position: chr10:38847491-38846991 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 69

Conread position: 1-515
Cow position: chr10:39041169-39041694 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 69

Conread position: 1-515
Cow position: chr10:39881126-39881660 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 344
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 124, 230

Conread position: 1-515
Cow position: chr10:60489787-60489282 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 68

Conread position: 1-516
Cow position: chr10:14860099-14859594 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 35

Conread position: 1-516
Cow position: chr10:58377456-58377950 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 341
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 146, 71

Conread position: 3-122
Cow position: chr10:25454721-25454603 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 3-228
Cow position: chr10:46694245-46694466 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 202, 33

Conread position: 3-256
Cow position: chr10:39853883-39854133 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 3-275
Cow position: chr10:39905057-39904789 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 99

Conread position: 3-282
Cow position: chr10:15862006-15862279 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 3-363
Cow position: chr10:19496155-19496500 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 36

Conread position: 3-373
Cow position: chr10:16475894-16475526 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 234
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 357, 120

Conread position: 3-479
Cow position: chr10:41157579-41157105 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 67

Conread position: 3-486
Cow position: chr10:280489-280978 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 67

Conread position: 3-486
Cow position: chr10:11685540-11686018 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 67

Conread position: 3-486
Cow position: chr10:25565127-25565597 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 67

Conread position: 3-486
Cow position: chr10:47906909-47906424 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 67

Conread position: 3-487
Cow position: chr10:62216737-62216248 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 71

Conread position: 3-496
Cow position: chr10:29632732-29633216 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 67

Conread position: 3-500
Cow position: chr10:34686024-34685523 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 67

Conread position: 3-500
Cow position: chr10:62778478-62777969 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 73

Conread position: 3-505
Cow position: chr10:25498483-25497981 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 67

Conread position: 3-506
Cow position: chr10:276721-276217 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 57

Conread position: 3-515
Cow position: chr10:3543450-3543957 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 67

Conread position: 3-515
Cow position: chr10:14803966-14803446 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 58

Conread position: 3-515
Cow position: chr10:19840284-19839765 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 67

Conread position: 3-515
Cow position: chr10:21400540-21401054 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-515
Cow position: chr10:32578420-32577912 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 22

Conread position: 3-515
Cow position: chr10:38345231-38345752 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-515
Cow position: chr10:38546094-38546601 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 59

Conread position: 3-515
Cow position: chr10:39179914-39179404 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 18

Conread position: 3-515
Cow position: chr10:39817232-39817733 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 70

Conread position: 3-515
Cow position: chr10:41567238-41566723 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 67

Conread position: 3-515
Cow position: chr10:41877050-41876534 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-515
Cow position: chr10:46191491-46190997 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 36

Conread position: 3-515
Cow position: chr10:51952487-51952991 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 67

Conread position: 3-515
Cow position: chr10:57559417-57559936 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 67

Conread position: 4-487
Cow position: chr10:29696366-29695888 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 68

Conread position: 4-515
Cow position: chr10:19143207-19143727 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 67

Conread position: 4-515
Cow position: chr10:54059226-54059735 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 30

Conread position: 5-255
Cow position: chr10:22842904-22842663 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 43, 0

Conread position: 5-439
Cow position: chr10:21076492-21076052 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 289
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 49, 117

Conread position: 5-506
Cow position: chr10:41351631-41352130 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 65

Conread position: 5-515
Cow position: chr10:7282556-7283068 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 65

Conread position: 5-515
Cow position: chr10:32064277-32063767 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 122

Conread position: 5-515
Cow position: chr10:37769952-37769437 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 65

Conread position: 5-515
Cow position: chr10:42109851-42109345 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 337
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 17, 50

Conread position: 5-515
Cow position: chr10:62408726-62409241 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 65

Conread position: 6-359
Cow position: chr10:58860553-58860896 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 230
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 84, 13

Conread position: 7-322
Cow position: chr10:184388-184078 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 206
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 55, 8

Conread position: 7-486
Cow position: chr10:41389417-41389903 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 303
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 153, 19

Conread position: 7-515
Cow position: chr10:42748217-42747714 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 50

Conread position: 8-508
Cow position: chr10:21740625-21741130 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 62

Conread position: 10-361
Cow position: chr10:47967503-47967845 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 218
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 258, 84

Conread position: 10-513
Cow position: chr10:29846485-29846998 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 60

Conread position: 21-281
Cow position: chr10:44294956-44294697 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 121, 56

Conread position: 39-468
Cow position: chr10:10478059-10478470 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 31

Conread position: 40-515
Cow position: chr10:57989872-57990352 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 30

Conread position: 45-441
Cow position: chr10:42664299-42663926 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 272
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 57, 0

Conread position: 45-483
Cow position: chr10:42683501-42683080 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 293
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 222, 25

Conread position: 53-515
Cow position: chr10:4192136-4192602 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 17

Conread position: 57-299
Cow position: chr10:65308201-65307959 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 222, 13

Conread position: 62-381
Cow position: chr10:55288524-55288844 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 205
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 12, 113

Conread position: 67-477
Cow position: chr10:8665044-8665457 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 273
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 7, 65

Conread position: 78-332
Cow position: chr10:13365789-13366050 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 84

Conread position: 87-515
Cow position: chr10:37060972-37060541 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 65

Conread position: 89-456
Cow position: chr10:42628706-42628347 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 6

Conread position: 104-467
Cow position: chr10:8328293-8328631 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 241
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 19, 24

Conread position: 104-495
Cow position: chr10:31523856-31523488 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 106-361
Cow position: chr10:20383515-20383765 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 154, 43

Conread position: 115-513
Cow position: chr10:10581693-10581286 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 43

Conread position: 135-515
Cow position: chr10:55093111-55092725 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 17

Conread position: 143-461
Cow position: chr10:61297319-61297000 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 15

Conread position: 165-515
Cow position: chr10:54967172-54967522 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 233
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 87, 96

Conread position: 203-515
Cow position: chr10:34318334-34318642 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 146, 66

Conread position: 208-476
Cow position: chr10:49310466-49310192 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 43, 71

Conread position: 216-470
Cow position: chr10:20537338-20537084 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 168
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 62, 125

Conread position: 237-370
Cow position: chr10:50018159-50018293 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 116
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 125, 0

Conread position: 265-510
Cow position: chr10:15862428-15862674 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 94, 144

Conread position: 275-515
Cow position: chr10:19715186-19715433 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 190
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 87, 169

Conread position: 278-515
Cow position: chr10:21467112-21466866 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 94, 0

Conread position: 349-515
Cow position: chr10:2123334-2123500 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 139, 8

Conread position: 361-513
Cow position: chr10:42736274-42736124 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 99, 118

Show alignments to all cow chromosomes.