Cow genome map


           Conread name:
           Ss1.1-rpigca0_007986.5
        

               Conread position:
               1-168
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               151, 60
               

               Conread position:
               1-169
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-233
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               80, 60
               

               Conread position:
               1-340
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               46, 77
               

               Conread position:
               1-439
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               305
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               118, 54
               

               Conread position:
               1-480
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               301
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               373, 36
               

               Conread position:
               1-498
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-506
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               336
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               141, 47
               

               Conread position:
               1-512
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               264, 69
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 20
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               541
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               371, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               354, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               344
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               124, 230
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               336, 68
               

               Conread position:
               1-516
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 35
               

               Conread position:
               1-516
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               341
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               146, 71
               

               Conread position:
               3-122
               

               Cow position:
               
               

               Alignm length:
               120
               

               Alignm identity:
               96
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-228
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               202, 33
               

               Conread position:
               3-256
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-275
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 99
               

               Conread position:
               3-282
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-363
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 36
               

               Conread position:
               3-373
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               357, 120
               

               Conread position:
               3-479
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               349, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               366, 67
               

               Conread position:
               3-487
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 71
               

               Conread position:
               3-496
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               284, 67
               

               Conread position:
               3-500
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 67
               

               Conread position:
               3-500
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 73
               

               Conread position:
               3-505
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               361, 67
               

               Conread position:
               3-506
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 57
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               260, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 58
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 22
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 59
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 18
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 70
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               347, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               409, 36
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 67
               

               Conread position:
               4-487
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 68
               

               Conread position:
               4-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 67
               

               Conread position:
               4-515
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               348, 30
               

               Conread position:
               5-255
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               5-439
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               289
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               49, 117
               

               Conread position:
               5-506
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 65
               

               Conread position:
               5-515
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               266, 65
               

               Conread position:
               5-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 122
               

               Conread position:
               5-515
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 65
               

               Conread position:
               5-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               337
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               17, 50
               

               Conread position:
               5-515
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 65
               

               Conread position:
               6-359
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               230
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               84, 13
               

               Conread position:
               7-322
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               55, 8
               

               Conread position:
               7-486
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               303
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               153, 19
               

               Conread position:
               7-515
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 50
               

               Conread position:
               8-508
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               361, 62
               

               Conread position:
               10-361
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               258, 84
               

               Conread position:
               10-513
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               269, 60
               

               Conread position:
               21-281
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               121, 56
               

               Conread position:
               39-468
               

               Cow position:
               
               

               Alignm length:
               433
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 31
               

               Conread position:
               40-515
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 30
               

               Conread position:
               45-441
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               272
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               45-483
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               293
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               222, 25
               

               Conread position:
               53-515
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               305, 17
               

               Conread position:
               57-299
               

               Cow position:
               
               

               Alignm length:
               246
               

               Alignm identity:
               182
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               222, 13
               

               Conread position:
               62-381
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               12, 113
               

               Conread position:
               67-477
               

               Cow position:
               
               

               Alignm length:
               421
               

               Alignm identity:
               273
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               7, 65
               

               Conread position:
               78-332
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 84
               

               Conread position:
               87-515
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 65
               

               Conread position:
               89-456
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 6
               

               Conread position:
               104-467
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               241
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               19, 24
               

               Conread position:
               104-495
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               106-361
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               154, 43
               

               Conread position:
               115-513
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 43
               

               Conread position:
               135-515
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 17
               

               Conread position:
               143-461
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 15
               

               Conread position:
               165-515
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               233
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               87, 96
               

               Conread position:
               203-515
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               212
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               146, 66
               

               Conread position:
               208-476
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               202
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               43, 71
               

               Conread position:
               216-470
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               62, 125
               

               Conread position:
               237-370
               

               Cow position:
               
               

               Alignm length:
               135
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               265-510
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               94, 144
               

               Conread position:
               275-515
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               190
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               87, 169
               

               Conread position:
               278-515
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               349-515
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               139, 8
               

               Conread position:
               361-513
               

               Cow position:
               
               

               Alignm length:
               154
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               99, 118
               
Show alignments to all cow chromosomes.