Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-441 |
| Cow position: | chr12:28765961-28766404 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 154 |
| Conread position: | 1-513 |
| Cow position: | chr12:22205688-22206203 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 69 |
| Conread position: | 1-513 |
| Cow position: | chr12:27932887-27933404 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 69 |
| Conread position: | 1-514 |
| Cow position: | chr12:6406590-6407105 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 69 |
| Conread position: | 1-514 |
| Cow position: | chr12:21941823-21941321 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 64 |
| Conread position: | 1-515 |
| Cow position: | chr12:251998-252521 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 62 |
| Conread position: | 1-515 |
| Cow position: | chr12:1402549-1402029 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 69 |
| Conread position: | 1-515 |
| Cow position: | chr12:8678064-8678583 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 69 |
| Conread position: | 1-515 |
| Cow position: | chr12:11098300-11097777 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr12:21500174-21499657 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 62 |
| Conread position: | 1-515 |
| Cow position: | chr12:25101003-25101528 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 69 |
| Conread position: | 1-515 |
| Cow position: | chr12:42859769-42860279 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 75 |
| Conread position: | 2-491 |
| Cow position: | chr12:15951203-15951691 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 3-281 |
| Cow position: | chr12:26946936-26947198 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-486 |
| Cow position: | chr12:2855-2365 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 67 |
| Conread position: | 3-486 |
| Cow position: | chr12:3360960-3360480 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 69 |
| Conread position: | 3-486 |
| Cow position: | chr12:43031327-43031806 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 67 |
| Conread position: | 3-493 |
| Cow position: | chr12:8311237-8310743 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 40 |
| Conread position: | 3-500 |
| Cow position: | chr12:21901996-21901506 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 69 |
| Conread position: | 3-500 |
| Cow position: | chr12:45261672-45261191 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 67 |
| Conread position: | 3-506 |
| Cow position: | chr12:21207750-21207245 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 36 |
| Conread position: | 3-513 |
| Cow position: | chr12:1137642-1137134 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 84, 144 |
| Conread position: | 3-515 |
| Cow position: | chr12:21254600-21255113 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 57 |
| Conread position: | 3-515 |
| Cow position: | chr12:21426750-21426241 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 502, 67 |
| Conread position: | 3-515 |
| Cow position: | chr12:26141870-26141349 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 67 |
| Conread position: | 3-515 |
| Cow position: | chr12:32653600-32653083 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 67 |
| Conread position: | 3-515 |
| Cow position: | chr12:37558611-37558095 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 67 |
| Conread position: | 4-487 |
| Cow position: | chr12:22332680-22332185 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 4-515 |
| Cow position: | chr12:2282601-2282083 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 66 |
| Conread position: | 5-327 |
| Cow position: | chr12:8982368-8982680 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 5-477 |
| Cow position: | chr12:10484089-10483620 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 130, 17 |
| Conread position: | 5-515 |
| Cow position: | chr12:20998068-20998583 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 71 |
| Conread position: | 11-502 |
| Cow position: | chr12:16293980-16293478 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 322 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 104, 65 |
| Conread position: | 48-515 |
| Cow position: | chr12:1868471-1868004 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 307, 37 |
| Conread position: | 72-466 |
| Cow position: | chr12:48405032-48404637 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 80 |
| Conread position: | 89-465 |
| Cow position: | chr12:14662640-14663022 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 69 |
| Conread position: | 93-470 |
| Cow position: | chr12:22026719-22026341 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 279, 70 |
| Conread position: | 114-282 |
| Cow position: | chr12:42420176-42420340 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 115-514 |
| Cow position: | chr12:21197772-21197369 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 43 |
| Conread position: | 179-359 |
| Cow position: | chr12:601171-601350 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 99, 19 |
| Conread position: | 179-465 |
| Cow position: | chr12:13949615-13949894 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 121, 31 |
| Conread position: | 179-506 |
| Cow position: | chr12:22255647-22255325 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 204-515 |
| Cow position: | chr12:2839737-2840049 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 12 |
| Conread position: | 215-509 |
| Cow position: | chr12:34855317-34855617 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 91, 58 |
| Conread position: | 215-516 |
| Cow position: | chr12:3631026-3630729 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 15, 133 |
| Conread position: | 264-427 |
| Cow position: | chr12:42420615-42420784 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 107, 6 |
| Conread position: | 264-487 |
| Cow position: | chr12:26947459-26947701 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 105, 47 |
Show alignments to all cow chromosomes.