Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-122 |
| Cow position: | chr13:10114812-10114934 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-289 |
| Cow position: | chr13:23003678-23003966 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 69 |
| Conread position: | 1-372 |
| Cow position: | chr13:60701454-60701806 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-483 |
| Cow position: | chr13:34911541-34912015 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 69 |
| Conread position: | 1-486 |
| Cow position: | chr13:31561025-31560539 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 141, 69 |
| Conread position: | 1-502 |
| Cow position: | chr13:34936984-34936469 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 114 |
| Conread position: | 1-509 |
| Cow position: | chr13:30140830-30140318 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 72 |
| Conread position: | 1-513 |
| Cow position: | chr13:32737984-32738491 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 10 |
| Conread position: | 1-513 |
| Cow position: | chr13:34186848-34187367 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 158 |
| Conread position: | 1-514 |
| Cow position: | chr13:20542536-20543040 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 23 |
| Conread position: | 1-515 |
| Cow position: | chr13:1593318-1593840 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 58 |
| Conread position: | 1-515 |
| Cow position: | chr13:3654472-3654991 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 69 |
| Conread position: | 1-515 |
| Cow position: | chr13:4940925-4940401 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 70 |
| Conread position: | 1-515 |
| Cow position: | chr13:9044338-9043847 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 69 |
| Conread position: | 1-515 |
| Cow position: | chr13:15520678-15521199 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr13:15924547-15925068 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 69 |
| Conread position: | 1-515 |
| Cow position: | chr13:33336505-33337007 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr13:34042531-34043048 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 75 |
| Conread position: | 1-515 |
| Cow position: | chr13:34325837-34326344 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 70 |
| Conread position: | 1-515 |
| Cow position: | chr13:35757078-35756550 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 69 |
| Conread position: | 2-500 |
| Cow position: | chr13:33927732-33928215 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 68 |
| Conread position: | 2-513 |
| Cow position: | chr13:31612499-31613018 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 68 |
| Conread position: | 2-515 |
| Cow position: | chr13:30302900-30302387 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 18 |
| Conread position: | 3-201 |
| Cow position: | chr13:3567618-3567425 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-295 |
| Cow position: | chr13:49973519-49973226 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 3-328 |
| Cow position: | chr13:56730450-56730762 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 3-334 |
| Cow position: | chr13:13324584-13324262 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-487 |
| Cow position: | chr13:2232495-2232018 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 69 |
| Conread position: | 3-487 |
| Cow position: | chr13:30657139-30657616 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 67 |
| Conread position: | 3-487 |
| Cow position: | chr13:33824896-33825392 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 67 |
| Conread position: | 3-500 |
| Cow position: | chr13:2908615-2909113 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 67 |
| Conread position: | 3-500 |
| Cow position: | chr13:31832435-31831938 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 67 |
| Conread position: | 3-500 |
| Cow position: | chr13:34692998-34692502 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 67 |
| Conread position: | 3-506 |
| Cow position: | chr13:50109297-50108794 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 73 |
| Conread position: | 3-506 |
| Cow position: | chr13:62327749-62328251 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 59 |
| Conread position: | 3-513 |
| Cow position: | chr13:34142824-34143341 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 67 |
| Conread position: | 3-514 |
| Cow position: | chr13:54284409-54283919 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 55 |
| Conread position: | 3-515 |
| Cow position: | chr13:2388983-2389481 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 323, 67 |
| Conread position: | 3-515 |
| Cow position: | chr13:3276989-3276474 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 52 |
| Conread position: | 3-515 |
| Cow position: | chr13:4872912-4872393 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 67 |
| Conread position: | 3-515 |
| Cow position: | chr13:6668288-6668809 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-515 |
| Cow position: | chr13:17308310-17307800 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 67 |
| Conread position: | 3-515 |
| Cow position: | chr13:21840359-21840881 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-515 |
| Cow position: | chr13:30244898-30245419 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 67 |
| Conread position: | 3-515 |
| Cow position: | chr13:31734246-31734757 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 67 |
| Conread position: | 3-515 |
| Cow position: | chr13:32986222-32986729 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 4-514 |
| Cow position: | chr13:2296964-2297475 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 66 |
| Conread position: | 5-501 |
| Cow position: | chr13:58261943-58261445 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 195, 71 |
| Conread position: | 5-515 |
| Cow position: | chr13:34868606-34868086 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 67 |
| Conread position: | 5-515 |
| Cow position: | chr13:48357140-48356648 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 70 |
| Conread position: | 6-442 |
| Cow position: | chr13:22185902-22186325 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 287 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 123, 56 |
| Conread position: | 6-477 |
| Cow position: | chr13:23410172-23410637 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 302 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 146, 62 |
| Conread position: | 9-516 |
| Cow position: | chr13:15080384-15080853 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 327 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 133, 67 |
| Conread position: | 13-364 |
| Cow position: | chr13:2306328-2305978 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 68, 64 |
| Conread position: | 24-514 |
| Cow position: | chr13:32544754-32544270 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 12 |
| Conread position: | 67-507 |
| Cow position: | chr13:30237939-30237501 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 27 |
| Conread position: | 94-515 |
| Cow position: | chr13:46732609-46733029 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 101-516 |
| Cow position: | chr13:60703794-60704203 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 104-379 |
| Cow position: | chr13:47860183-47859914 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 108-489 |
| Cow position: | chr13:4482201-4481819 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 18 |
| Conread position: | 132-456 |
| Cow position: | chr13:3058285-3058617 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 26 |
| Conread position: | 154-486 |
| Cow position: | chr13:13046137-13046475 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 21 |
| Conread position: | 182-513 |
| Cow position: | chr13:15543125-15542782 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 206-371 |
| Cow position: | chr13:34027908-34027739 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 216-358 |
| Cow position: | chr13:32606548-32606693 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 226-486 |
| Cow position: | chr13:35030127-35029869 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 179, 45 |
| Conread position: | 275-515 |
| Cow position: | chr13:53834336-53834087 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 97, 0 |
Show alignments to all cow chromosomes.