Cow genome map

Conread name: Ss1.1-rpigca0_007986.5

Conread position: 1-217
Cow position: chr14:13864370-13864581 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 69, 0

Conread position: 1-281
Cow position: chr14:15276867-15277141 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 1-281
Cow position: chr14:46464786-46464507 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 79

Conread position: 1-282
Cow position: chr14:50134783-50134508 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 115, 71

Conread position: 1-331
Cow position: chr14:45303651-45303976 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 69

Conread position: 1-453
Cow position: chr14:16919977-16920427 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 71

Conread position: 1-491
Cow position: chr14:11468299-11467817 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 10

Conread position: 1-502
Cow position: chr14:41755557-41755079 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 58

Conread position: 1-506
Cow position: chr14:44261380-44261890 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 350
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 148, 75

Conread position: 1-507
Cow position: chr14:14309363-14309859 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 75

Conread position: 1-508
Cow position: chr14:13302743-13302231 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 20

Conread position: 1-509
Cow position: chr14:43553135-43552621 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 338
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 21, 37

Conread position: 1-513
Cow position: chr14:46084336-46083832 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 10

Conread position: 1-513
Cow position: chr14:47589582-47589068 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 336
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 275, 61

Conread position: 1-515
Cow position: chr14:5528775-5528258 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 69

Conread position: 1-515
Cow position: chr14:7472087-7471567 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 10

Conread position: 1-515
Cow position: chr14:11154452-11154962 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 70

Conread position: 1-515
Cow position: chr14:16273582-16274106 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position: chr14:17001341-17001856 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 69

Conread position: 1-515
Cow position: chr14:17685109-17684594 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 69

Conread position: 1-515
Cow position: chr14:19328555-19329075 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 69

Conread position: 1-515
Cow position: chr14:20782169-20781650 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 20

Conread position: 1-515
Cow position: chr14:28994141-28994665 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 69

Conread position: 1-515
Cow position: chr14:37223615-37223093 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 70

Conread position: 1-515
Cow position: chr14:44226112-44225613 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 373, 27

Conread position: 1-515
Cow position: chr14:44782546-44783053 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 335
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 155, 20

Conread position: 1-515
Cow position: chr14:45917129-45916606 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 69

Conread position: 1-515
Cow position: chr14:48254602-48255121 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 70

Conread position: 1-516
Cow position: chr14:40169972-40170489 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 75

Conread position: 2-371
Cow position: chr14:43034175-43034532 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 239
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 19, 79

Conread position: 2-510
Cow position: chr14:30596672-30597176 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 59

Conread position: 2-513
Cow position: chr14:38532581-38533102 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 68

Conread position: 2-515
Cow position: chr14:13272964-13272454 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 68

Conread position: 2-516
Cow position: chr14:31607217-31607727 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 68

Conread position: 2-516
Cow position: chr14:45080233-45079731 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 68

Conread position: 3-231
Cow position: chr14:41085071-41085296 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 74, 66

Conread position: 3-281
Cow position: chr14:2284050-2283776 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 3-295
Cow position: chr14:23901089-23901381 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-366
Cow position: chr14:33394065-33394427 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-407
Cow position: chr14:42152034-42151633 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 67

Conread position: 3-414
Cow position: chr14:44422265-44421852 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 67

Conread position: 3-478
Cow position: chr14:21743314-21742839 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 296
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 41, 31

Conread position: 3-486
Cow position: chr14:9045277-9044787 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 69

Conread position: 3-486
Cow position: chr14:29048191-29048672 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 67

Conread position: 3-486
Cow position: chr14:47624271-47623793 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 68

Conread position: 3-486
Cow position: chr14:47640852-47640374 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 309
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 61, 105

Conread position: 3-487
Cow position: chr14:45767713-45767231 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 57

Conread position: 3-492
Cow position: chr14:13660277-13660779 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 67

Conread position: 3-500
Cow position: chr14:36967966-36967465 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 67

Conread position: 3-500
Cow position: chr14:44130626-44130135 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 48

Conread position: 3-500
Cow position: chr14:45712275-45712774 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 55

Conread position: 3-502
Cow position: chr14:44855715-44856217 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 67

Conread position: 3-506
Cow position: chr14:23257070-23256560 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 67

Conread position: 3-515
Cow position: chr14:750281-749771 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 67

Conread position: 3-515
Cow position: chr14:17491745-17492260 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 67

Conread position: 3-515
Cow position: chr14:30585240-30585745 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 55

Conread position: 3-515
Cow position: chr14:45672333-45672852 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 67

Conread position: 4-515
Cow position: chr14:35928890-35928368 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 77

Conread position: 4-515
Cow position: chr14:44377139-44376630 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 66

Conread position: 5-457
Cow position: chr14:13326429-13326858 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 299
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 351, 34

Conread position: 5-483
Cow position: chr14:23260212-23260707 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 310
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 77, 125

Conread position: 5-487
Cow position: chr14:45850932-45850449 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 7

Conread position: 5-515
Cow position: chr14:22031976-22032491 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 65

Conread position: 5-515
Cow position: chr14:35387438-35387934 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 32

Conread position: 6-249
Cow position: chr14:29265250-29265489 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 6-480
Cow position: chr14:34925258-34924789 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 288
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 166, 95

Conread position: 6-515
Cow position: chr14:44685751-44685238 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 33

Conread position: 7-403
Cow position: chr14:45205787-45205380 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 75

Conread position: 7-478
Cow position: chr14:23529316-23529762 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 309
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 344, 52

Conread position: 7-502
Cow position: chr14:7830833-7831330 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 29

Conread position: 7-515
Cow position: chr14:46670015-46669519 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 324
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 168, 55

Conread position: 9-515
Cow position: chr14:22019101-22018593 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 68

Conread position: 15-515
Cow position: chr14:45160547-45160055 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 77

Conread position: 18-487
Cow position: chr14:23690531-23691005 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 53

Conread position: 19-341
Cow position: chr14:13621915-13622236 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 139

Conread position: 20-305
Cow position: chr14:45029421-45029703 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 248, 50

Conread position: 21-228
Cow position: chr14:13778660-13778456 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 144
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 60, 55

Conread position: 27-515
Cow position: chr14:45833851-45833358 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 123

Conread position: 28-515
Cow position: chr14:44580606-44580139 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 20

Conread position: 30-513
Cow position: chr14:40339379-40338907 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 40

Conread position: 43-515
Cow position: chr14:47921671-47921216 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 307
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 45

Conread position: 58-513
Cow position: chr14:50110229-50109773 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 70

Conread position: 80-282
Cow position: chr14:48824248-48824052 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 145, 7

Conread position: 85-399
Cow position: chr14:12608837-12608528 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 190, 11

Conread position: 87-486
Cow position: chr14:48704227-48703829 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 255
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 194, 71

Conread position: 100-281
Cow position: chr14:1500645-1500467 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 177, 42

Conread position: 161-321
Cow position: chr14:37414391-37414554 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 117, 0

Conread position: 179-515
Cow position: chr14:44780378-44780713 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 226
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 94, 152

Conread position: 181-509
Cow position: chr14:14422489-14422807 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 230
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 174, 70

Conread position: 183-498
Cow position: chr14:34775129-34774813 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 218
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 97, 61

Conread position: 203-492
Cow position: chr14:33607172-33607464 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 198
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 99

Conread position: 216-499
Cow position: chr14:41671239-41670940 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 199
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 62

Conread position: 225-453
Cow position: chr14:13778357-13778119 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 55, 0

Conread position: 235-487
Cow position: chr14:41085329-41085586 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 38

Conread position: 238-478
Cow position: chr14:38309077-38309318 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 169
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 43, 10

Conread position: 265-515
Cow position: chr14:44551506-44551250 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 236

Conread position: 273-513
Cow position: chr14:15277409-15277661 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 102, 194

Conread position: 273-514
Cow position: chr14:46464233-46464003 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 146, 101

Conread position: 277-487
Cow position: chr14:1500192-1499975 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 25, 160

Conread position: 277-507
Cow position: chr14:50134348-50134115 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 82, 33

Conread position: 279-515
Cow position: chr14:2283424-2283184 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 90, 213

Conread position: 298-515
Cow position: chr14:17241652-17241432 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 145
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 64, 0

Show alignments to all cow chromosomes.