Cow genome map


           Conread name:
           Ss1.1-rpigca0_007986.5
        

               Conread position:
               1-217
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 79
               

               Conread position:
               1-282
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               204
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               115, 71
               

               Conread position:
               1-331
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 69
               

               Conread position:
               1-453
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 71
               

               Conread position:
               1-491
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 10
               

               Conread position:
               1-502
               

               Cow position:
               
               

               Alignm length:
               512
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 58
               

               Conread position:
               1-506
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               350
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               148, 75
               

               Conread position:
               1-507
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               191, 75
               

               Conread position:
               1-508
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 20
               

               Conread position:
               1-509
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               338
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               21, 37
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 10
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               336
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               275, 61
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 10
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 70
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               361, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 20
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 70
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               373, 27
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               335
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               155, 20
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 70
               

               Conread position:
               1-516
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 75
               

               Conread position:
               2-371
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               239
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               19, 79
               

               Conread position:
               2-510
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               369, 59
               

               Conread position:
               2-513
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 68
               

               Conread position:
               2-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 68
               

               Conread position:
               2-516
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 68
               

               Conread position:
               2-516
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 68
               

               Conread position:
               3-231
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               74, 66
               

               Conread position:
               3-281
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               3-295
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-366
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-407
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 67
               

               Conread position:
               3-414
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 67
               

               Conread position:
               3-478
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               296
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               41, 31
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 69
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 68
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               309
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               61, 105
               

               Conread position:
               3-487
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 57
               

               Conread position:
               3-492
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 67
               

               Conread position:
               3-500
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 67
               

               Conread position:
               3-500
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               367, 48
               

               Conread position:
               3-500
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               262, 55
               

               Conread position:
               3-502
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 67
               

               Conread position:
               3-506
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 55
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 67
               

               Conread position:
               4-515
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 77
               

               Conread position:
               4-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 66
               

               Conread position:
               5-457
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               299
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               351, 34
               

               Conread position:
               5-483
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               310
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               77, 125
               

               Conread position:
               5-487
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               358, 7
               

               Conread position:
               5-515
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               278, 65
               

               Conread position:
               5-515
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 32
               

               Conread position:
               6-249
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               6-480
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               288
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               166, 95
               

               Conread position:
               6-515
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 33
               

               Conread position:
               7-403
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 75
               

               Conread position:
               7-478
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               309
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               344, 52
               

               Conread position:
               7-502
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 29
               

               Conread position:
               7-515
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               324
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               168, 55
               

               Conread position:
               9-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 68
               

               Conread position:
               15-515
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               258, 77
               

               Conread position:
               18-487
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 53
               

               Conread position:
               19-341
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               261, 139
               

               Conread position:
               20-305
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               205
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               248, 50
               

               Conread position:
               21-228
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               60, 55
               

               Conread position:
               27-515
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 123
               

               Conread position:
               28-515
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 20
               

               Conread position:
               30-513
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               341, 40
               

               Conread position:
               43-515
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               307
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               62, 45
               

               Conread position:
               58-513
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 70
               

               Conread position:
               80-282
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               145, 7
               

               Conread position:
               85-399
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               222
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               190, 11
               

               Conread position:
               87-486
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               255
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               194, 71
               

               Conread position:
               100-281
               

               Cow position:
               
               

               Alignm length:
               183
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               177, 42
               

               Conread position:
               161-321
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               179-515
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               226
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               94, 152
               

               Conread position:
               181-509
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               174, 70
               

               Conread position:
               183-498
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               97, 61
               

               Conread position:
               203-492
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               10, 99
               

               Conread position:
               216-499
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               29, 62
               

               Conread position:
               225-453
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               235-487
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 38
               

               Conread position:
               238-478
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               43, 10
               

               Conread position:
               265-515
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 236
               

               Conread position:
               273-513
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               102, 194
               

               Conread position:
               273-514
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               146, 101
               

               Conread position:
               277-487
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               25, 160
               

               Conread position:
               277-507
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               82, 33
               

               Conread position:
               279-515
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               90, 213
               

               Conread position:
               298-515
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               64, 0
               
Show alignments to all cow chromosomes.