Cow genome map

Conread name: Ss1.1-rpigca0_007986.5

Conread position: 1-191
Cow position: chr16:29032526-29032340 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 70, 0

Conread position: 1-256
Cow position: chr16:14666462-14666714 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 0

Conread position: 1-278
Cow position: chr16:5483690-5483416 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 0

Conread position: 1-281
Cow position: chr16:34529688-34529417 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 69, 0

Conread position: 1-283
Cow position: chr16:335657-335391 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 201
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 14, 0

Conread position: 1-370
Cow position: chr16:2411602-2411970 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 69

Conread position: 1-460
Cow position: chr16:27734436-27734902 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 69

Conread position: 1-461
Cow position: chr16:23982678-23982213 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 69

Conread position: 1-480
Cow position: chr16:42740055-42740533 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 75

Conread position: 1-489
Cow position: chr16:26663115-26662626 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 371, 38

Conread position: 1-505
Cow position: chr16:5888833-5888358 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 36

Conread position: 1-505
Cow position: chr16:54647684-54647193 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 18

Conread position: 1-507
Cow position: chr16:9929908-9929410 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 69

Conread position: 1-510
Cow position: chr16:32935526-32935005 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 69

Conread position: 1-512
Cow position: chr16:49257215-49257722 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 69

Conread position: 1-513
Cow position: chr16:2239366-2239878 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 114

Conread position: 1-513
Cow position: chr16:10437610-10437106 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 69

Conread position: 1-513
Cow position: chr16:25440985-25440462 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-513
Cow position: chr16:25458104-25458627 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-514
Cow position: chr16:25341332-25340822 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 68

Conread position: 1-515
Cow position: chr16:407667-408186 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 69

Conread position: 1-515
Cow position: chr16:1568087-1568601 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position: chr16:2483776-2484291 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 69

Conread position: 1-515
Cow position: chr16:2727934-2728467 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 69

Conread position: 1-515
Cow position: chr16:8816737-8817259 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position: chr16:12538556-12539075 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 69

Conread position: 1-515
Cow position: chr16:15184171-15183653 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 69

Conread position: 1-515
Cow position: chr16:18687758-18688272 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 69

Conread position: 1-515
Cow position: chr16:25084988-25084475 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 69

Conread position: 1-515
Cow position: chr16:29046389-29045877 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 69

Conread position: 1-515
Cow position: chr16:31592537-31593060 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 69

Conread position: 1-515
Cow position: chr16:40296811-40297329 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 69

Conread position: 1-516
Cow position: chr16:15566117-15565597 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 69

Conread position: 1-516
Cow position: chr16:42051014-42051493 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 2-467
Cow position: chr16:36232244-36232701 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 68

Conread position: 2-480
Cow position: chr16:26517644-26518111 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 293
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 129, 21

Conread position: 2-513
Cow position: chr16:51685803-51685296 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 336
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 141, 44

Conread position: 2-515
Cow position: chr16:43897901-43898422 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 68

Conread position: 3-319
Cow position: chr16:39820997-39820689 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 3-340
Cow position: chr16:36361999-36362318 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 57

Conread position: 3-344
Cow position: chr16:25188008-25187668 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 67

Conread position: 3-486
Cow position: chr16:5661215-5660744 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 58

Conread position: 3-487
Cow position: chr16:11052527-11052049 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 67

Conread position: 3-500
Cow position: chr16:36282766-36282260 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 67

Conread position: 3-506
Cow position: chr16:20254946-20255448 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 67

Conread position: 3-506
Cow position: chr16:28170997-28171501 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 73

Conread position: 3-515
Cow position: chr16:32105-31609 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 67

Conread position: 3-515
Cow position: chr16:1430589-1430073 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 69

Conread position: 3-515
Cow position: chr16:5918848-5918327 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 55

Conread position: 3-515
Cow position: chr16:6942989-6942468 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 67

Conread position: 3-515
Cow position: chr16:15492073-15491567 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 73

Conread position: 3-515
Cow position: chr16:25156857-25157365 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 17

Conread position: 3-515
Cow position: chr16:29675945-29676459 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 50

Conread position: 3-515
Cow position: chr16:40886892-40887418 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 67

Conread position: 4-328
Cow position: chr16:56551490-56551170 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 72

Conread position: 4-383
Cow position: chr16:25153127-25152769 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 72

Conread position: 4-500
Cow position: chr16:6549160-6549659 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 66

Conread position: 4-506
Cow position: chr16:32606193-32605685 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 66

Conread position: 5-122
Cow position: chr16:19713521-19713637 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 5-278
Cow position: chr16:26650791-26650529 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 187
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 5-354
Cow position: chr16:11111578-11111918 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 231
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 118, 71

Conread position: 5-366
Cow position: chr16:16276143-16276502 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 71

Conread position: 5-470
Cow position: chr16:47563044-47562589 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 20

Conread position: 5-502
Cow position: chr16:44388215-44388695 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 322
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 17, 49

Conread position: 6-458
Cow position: chr16:52815275-52815710 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 67

Conread position: 6-515
Cow position: chr16:24155083-24155579 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 325
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 68, 48

Conread position: 7-486
Cow position: chr16:4303116-4303593 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 63

Conread position: 7-515
Cow position: chr16:23253144-23253654 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 63

Conread position: 9-371
Cow position: chr16:10808514-10808169 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 18-500
Cow position: chr16:14669642-14669159 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 311
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 83, 58

Conread position: 29-515
Cow position: chr16:28471755-28472250 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 48

Conread position: 46-513
Cow position: chr16:31375939-31376377 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 8

Conread position: 46-515
Cow position: chr16:23670274-23670735 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 15

Conread position: 47-515
Cow position: chr16:24881369-24881841 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 23

Conread position: 55-281
Cow position: chr16:5652062-5651843 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 76, 6

Conread position: 58-426
Cow position: chr16:55080046-55080415 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 232
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 294, 56

Conread position: 58-515
Cow position: chr16:10204105-10204569 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 100

Conread position: 87-515
Cow position: chr16:29982566-29982120 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 299
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 117, 71

Conread position: 87-515
Cow position: chr16:49235834-49236261 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 18

Conread position: 90-487
Cow position: chr16:7905924-7905519 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 68

Conread position: 96-256
Cow position: chr16:4442149-4441988 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 144, 63

Conread position: 102-516
Cow position: chr16:16688138-16687716 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 56

Conread position: 146-513
Cow position: chr16:7676474-7676847 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 21

Conread position: 153-515
Cow position: chr16:9777349-9776983 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 11

Conread position: 155-509
Cow position: chr16:10376056-10376407 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 0

Conread position: 156-313
Cow position: chr16:56321054-56320894 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 126, 0

Conread position: 166-506
Cow position: chr16:14422925-14422574 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 246
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 35, 21

Conread position: 179-506
Cow position: chr16:19713655-19713989 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 319

Conread position: 179-514
Cow position: chr16:44965251-44964897 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 241
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 99, 125

Conread position: 187-515
Cow position: chr16:29032100-29031771 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 26

Conread position: 200-486
Cow position: chr16:27004540-27004256 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 197
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 251, 152

Conread position: 215-483
Cow position: chr16:9457684-9457410 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 184
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 65, 212

Conread position: 216-512
Cow position: chr16:16029916-16029616 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 197
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 63, 152

Conread position: 262-515
Cow position: chr16:21185388-21185127 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 107, 11

Conread position: 265-515
Cow position: chr16:15369539-15369287 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 10, 41

Conread position: 301-515
Cow position: chr16:14666719-14666942 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 64, 0

Conread position: 304-487
Cow position: chr16:39818692-39818502 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 73, 174

Conread position: 311-460
Cow position: chr16:5483265-5483419 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 60, 0

Show alignments to all cow chromosomes.