Cow genome map


           Conread name:
           Ss1.1-rpigca0_007986.5
        

               Conread position:
               1-191
               

               Cow position:
               
               

               Alignm length:
               191
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               1-256
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               187
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-278
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               198
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               201
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-283
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               1-370
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 69
               

               Conread position:
               1-460
               

               Cow position:
               
               

               Alignm length:
               470
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 69
               

               Conread position:
               1-461
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 69
               

               Conread position:
               1-480
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 75
               

               Conread position:
               1-489
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               371, 38
               

               Conread position:
               1-505
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 36
               

               Conread position:
               1-505
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 18
               

               Conread position:
               1-507
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               364, 69
               

               Conread position:
               1-510
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 69
               

               Conread position:
               1-512
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 69
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 114
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               361, 69
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               530
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 68
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               364, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               244, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 69
               

               Conread position:
               1-516
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               280, 69
               

               Conread position:
               1-516
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               2-467
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 68
               

               Conread position:
               2-480
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               293
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               129, 21
               

               Conread position:
               2-513
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               336
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               141, 44
               

               Conread position:
               2-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 68
               

               Conread position:
               3-319
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-340
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               248, 57
               

               Conread position:
               3-344
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 58
               

               Conread position:
               3-487
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               359, 67
               

               Conread position:
               3-500
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               259, 67
               

               Conread position:
               3-506
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 67
               

               Conread position:
               3-506
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 73
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               263, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 69
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 55
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 73
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 17
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 50
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 67
               

               Conread position:
               4-328
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 72
               

               Conread position:
               4-383
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 72
               

               Conread position:
               4-500
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 66
               

               Conread position:
               4-506
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 66
               

               Conread position:
               5-122
               

               Cow position:
               
               

               Alignm length:
               118
               

               Alignm identity:
               94
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               5-278
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               187
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               5-354
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               231
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               118, 71
               

               Conread position:
               5-366
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 71
               

               Conread position:
               5-470
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               339, 20
               

               Conread position:
               5-502
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               322
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               17, 49
               

               Conread position:
               6-458
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 67
               

               Conread position:
               6-515
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               325
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               68, 48
               

               Conread position:
               7-486
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 63
               

               Conread position:
               7-515
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 63
               

               Conread position:
               9-371
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               18-500
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               311
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               83, 58
               

               Conread position:
               29-515
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 48
               

               Conread position:
               46-513
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 8
               

               Conread position:
               46-515
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               306, 15
               

               Conread position:
               47-515
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 23
               

               Conread position:
               55-281
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               76, 6
               

               Conread position:
               58-426
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               294, 56
               

               Conread position:
               58-515
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 100
               

               Conread position:
               87-515
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               299
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               117, 71
               

               Conread position:
               87-515
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 18
               

               Conread position:
               90-487
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 68
               

               Conread position:
               96-256
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               144, 63
               

               Conread position:
               102-516
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 56
               

               Conread position:
               146-513
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 21
               

               Conread position:
               153-515
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 11
               

               Conread position:
               155-509
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 0
               

               Conread position:
               156-313
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               166-506
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               246
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               35, 21
               

               Conread position:
               179-506
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 319
               

               Conread position:
               179-514
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               99, 125
               

               Conread position:
               187-515
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 26
               

               Conread position:
               200-486
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               251, 152
               

               Conread position:
               215-483
               

               Cow position:
               
               

               Alignm length:
               278
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               65, 212
               

               Conread position:
               216-512
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               63, 152
               

               Conread position:
               262-515
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               183
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               107, 11
               

               Conread position:
               265-515
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               193
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               10, 41
               

               Conread position:
               301-515
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               304-487
               

               Cow position:
               
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               73, 174
               

               Conread position:
               311-460
               

               Cow position:
               
               

               Alignm length:
               155
               

               Alignm identity:
               113
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               60, 0
               
Show alignments to all cow chromosomes.