Cow genome map


           Conread name:
           Ss1.1-rpigca0_007986.5
        

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-370
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 76
               

               Conread position:
               1-371
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               278, 76
               

               Conread position:
               1-407
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 69
               

               Conread position:
               1-420
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 11
               

               Conread position:
               1-471
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 69
               

               Conread position:
               1-500
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 69
               

               Conread position:
               1-500
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 81
               

               Conread position:
               1-502
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               266, 69
               

               Conread position:
               1-506
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               365, 69
               

               Conread position:
               1-506
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               425, 71
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               267, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               278, 27
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               364, 32
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               371, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 69
               

               Conread position:
               2-483
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               309
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               282, 86
               

               Conread position:
               2-506
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               336
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               163, 37
               

               Conread position:
               2-515
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 68
               

               Conread position:
               2-516
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 68
               

               Conread position:
               3-211
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-275
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               3-335
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 67
               

               Conread position:
               3-335
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 67
               

               Conread position:
               3-355
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               244
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               278, 67
               

               Conread position:
               3-360
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               253, 67
               

               Conread position:
               3-363
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 156
               

               Conread position:
               3-371
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               272, 48
               

               Conread position:
               3-371
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 68
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               492
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 67
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 73
               

               Conread position:
               3-506
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 67
               

               Conread position:
               3-506
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 69
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               366, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 50
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 31
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               364, 36
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               366, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 67
               

               Conread position:
               4-219
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               4-276
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               4-483
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 67
               

               Conread position:
               4-486
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               264, 66
               

               Conread position:
               5-349
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               224
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               144, 61
               

               Conread position:
               5-470
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               324
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               139, 71
               

               Conread position:
               5-486
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 46
               

               Conread position:
               5-487
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 68
               

               Conread position:
               5-500
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 65
               

               Conread position:
               7-487
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               304
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               116, 69
               

               Conread position:
               31-478
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 129
               

               Conread position:
               35-515
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 35
               

               Conread position:
               44-492
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 28
               

               Conread position:
               48-515
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 28
               

               Conread position:
               57-515
               

               Cow position:
               
               

               Alignm length:
               469
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 5
               

               Conread position:
               73-515
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               303
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               8, 93
               

               Conread position:
               94-515
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 58
               

               Conread position:
               100-335
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               9, 69
               

               Conread position:
               109-370
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 49
               

               Conread position:
               132-480
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 26
               

               Conread position:
               182-390
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               124, 87
               

               Conread position:
               200-480
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               114, 65
               

               Conread position:
               225-487
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 253
               

               Conread position:
               263-494
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               18, 186
               

               Conread position:
               264-487
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               104, 9
               

               Conread position:
               264-515
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               108, 43
               

               Conread position:
               273-513
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               99, 62
               

               Conread position:
               273-516
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               285-505
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               146, 212
               

               Conread position:
               292-515
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               77, 0
               
Show alignments to all cow chromosomes.