Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-281 |
| Cow position: | chr17:6259790-6259513 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-370 |
| Cow position: | chr17:15850341-15849976 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 76 |
| Conread position: | 1-371 |
| Cow position: | chr17:16859611-16859981 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 76 |
| Conread position: | 1-407 |
| Cow position: | chr17:1880037-1879624 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 69 |
| Conread position: | 1-420 |
| Cow position: | chr17:2173823-2173401 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 11 |
| Conread position: | 1-471 |
| Cow position: | chr17:13856824-13857306 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 69 |
| Conread position: | 1-500 |
| Cow position: | chr17:16890064-16889569 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 69 |
| Conread position: | 1-500 |
| Cow position: | chr17:44852987-44853485 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 81 |
| Conread position: | 1-502 |
| Cow position: | chr17:4060047-4059546 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 69 |
| Conread position: | 1-506 |
| Cow position: | chr17:11087779-11088290 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 69 |
| Conread position: | 1-506 |
| Cow position: | chr17:14894106-14893592 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 69 |
| Conread position: | 1-515 |
| Cow position: | chr17:152537-153029 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 425, 71 |
| Conread position: | 1-515 |
| Cow position: | chr17:3642891-3643413 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 69 |
| Conread position: | 1-515 |
| Cow position: | chr17:4081586-4081073 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 27 |
| Conread position: | 1-515 |
| Cow position: | chr17:4295295-4294819 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 32 |
| Conread position: | 1-515 |
| Cow position: | chr17:13929613-13929096 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr17:15322754-15322253 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 69 |
| Conread position: | 1-515 |
| Cow position: | chr17:18103735-18104258 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr17:19269421-19269923 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 69 |
| Conread position: | 2-483 |
| Cow position: | chr17:14308367-14308849 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 282, 86 |
| Conread position: | 2-506 |
| Cow position: | chr17:4672136-4671647 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 336 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 163, 37 |
| Conread position: | 2-515 |
| Cow position: | chr17:20401619-20401101 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 68 |
| Conread position: | 2-516 |
| Cow position: | chr17:25737607-25737085 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 68 |
| Conread position: | 3-211 |
| Cow position: | chr17:2556066-2555861 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-275 |
| Cow position: | chr17:20087789-20088056 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 3-335 |
| Cow position: | chr17:1946919-1946587 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 67 |
| Conread position: | 3-335 |
| Cow position: | chr17:18185590-18185913 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 67 |
| Conread position: | 3-355 |
| Cow position: | chr17:23324511-23324850 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 278, 67 |
| Conread position: | 3-360 |
| Cow position: | chr17:20183287-20183640 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 67 |
| Conread position: | 3-363 |
| Cow position: | chr17:43988480-43988121 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 156 |
| Conread position: | 3-371 |
| Cow position: | chr17:2588254-2587911 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 272, 48 |
| Conread position: | 3-371 |
| Cow position: | chr17:6089218-6089586 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 67 |
| Conread position: | 3-486 |
| Cow position: | chr17:14325559-14326036 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 68 |
| Conread position: | 3-486 |
| Cow position: | chr17:15157020-15157499 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 67 |
| Conread position: | 3-486 |
| Cow position: | chr17:15435734-15435248 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 67 |
| Conread position: | 3-486 |
| Cow position: | chr17:35592156-35591681 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 73 |
| Conread position: | 3-506 |
| Cow position: | chr17:14217081-14217590 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 67 |
| Conread position: | 3-506 |
| Cow position: | chr17:22429540-22430041 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 67 |
| Conread position: | 3-515 |
| Cow position: | chr17:228360-228873 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 69 |
| Conread position: | 3-515 |
| Cow position: | chr17:1382871-1383389 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 67 |
| Conread position: | 3-515 |
| Cow position: | chr17:2248640-2249157 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 50 |
| Conread position: | 3-515 |
| Cow position: | chr17:2262051-2261539 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 31 |
| Conread position: | 3-515 |
| Cow position: | chr17:8209049-8208532 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 36 |
| Conread position: | 3-515 |
| Cow position: | chr17:9653513-9654027 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 67 |
| Conread position: | 3-515 |
| Cow position: | chr17:15143424-15143938 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 67 |
| Conread position: | 3-515 |
| Cow position: | chr17:22160859-22160338 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 67 |
| Conread position: | 3-515 |
| Cow position: | chr17:24633897-24633379 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-515 |
| Cow position: | chr17:24780991-24780474 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 67 |
| Conread position: | 4-219 |
| Cow position: | chr17:18026815-18027027 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 4-276 |
| Cow position: | chr17:22132173-22131907 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 4-483 |
| Cow position: | chr17:23857092-23857592 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 4-486 |
| Cow position: | chr17:20665784-20666273 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 66 |
| Conread position: | 5-349 |
| Cow position: | chr17:1658634-1658960 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 144, 61 |
| Conread position: | 5-470 |
| Cow position: | chr17:6002073-6002544 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 324 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 139, 71 |
| Conread position: | 5-486 |
| Cow position: | chr17:27345743-27345260 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 5-487 |
| Cow position: | chr17:1283847-1284304 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 68 |
| Conread position: | 5-500 |
| Cow position: | chr17:2287327-2286815 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 65 |
| Conread position: | 7-487 |
| Cow position: | chr17:16417895-16418367 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 31-478 |
| Cow position: | chr17:28110002-28109557 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 129 |
| Conread position: | 35-515 |
| Cow position: | chr17:249829-249351 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 35 |
| Conread position: | 44-492 |
| Cow position: | chr17:15370974-15370528 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 28 |
| Conread position: | 48-515 |
| Cow position: | chr17:11783273-11782793 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 57-515 |
| Cow position: | chr17:2579445-2578987 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 5 |
| Conread position: | 73-515 |
| Cow position: | chr17:2147075-2146643 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 303 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 8, 93 |
| Conread position: | 94-515 |
| Cow position: | chr17:40804250-40803815 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 58 |
| Conread position: | 100-335 |
| Cow position: | chr17:3710216-3710448 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 9, 69 |
| Conread position: | 109-370 |
| Cow position: | chr17:2738216-2737955 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 49 |
| Conread position: | 132-480 |
| Cow position: | chr17:39933497-39933147 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 26 |
| Conread position: | 182-390 |
| Cow position: | chr17:42264286-42264083 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 124, 87 |
| Conread position: | 200-480 |
| Cow position: | chr17:19609159-19609440 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 114, 65 |
| Conread position: | 225-487 |
| Cow position: | chr17:32024472-32024741 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 253 |
| Conread position: | 263-494 |
| Cow position: | chr17:20088069-20088303 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 264-487 |
| Cow position: | chr17:22131623-22131393 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 9 |
| Conread position: | 264-515 |
| Cow position: | chr17:6259383-6259130 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 108, 43 |
| Conread position: | 273-513 |
| Cow position: | chr17:55009-55255 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 99, 62 |
| Conread position: | 273-516 |
| Cow position: | chr17:31200392-31200645 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 285-505 |
| Cow position: | chr17:12670677-12670900 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 146, 212 |
| Conread position: | 292-515 |
| Cow position: | chr17:6119805-6119573 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.