Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-224 |
| Cow position: | chr18:14130537-14130322 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-281 |
| Cow position: | chr18:35288691-35288409 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 58, 130 |
| Conread position: | 1-350 |
| Cow position: | chr18:16877630-16877290 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-368 |
| Cow position: | chr18:16393494-16393853 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 249, 71 |
| Conread position: | 1-465 |
| Cow position: | chr18:40478536-40478067 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 69 |
| Conread position: | 1-492 |
| Cow position: | chr18:35335632-35335138 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 69 |
| Conread position: | 1-502 |
| Cow position: | chr18:14416129-14415626 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 69 |
| Conread position: | 1-513 |
| Cow position: | chr18:28973750-28974265 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 69 |
| Conread position: | 1-515 |
| Cow position: | chr18:9186614-9187131 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 61 |
| Conread position: | 1-515 |
| Cow position: | chr18:16659852-16660367 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 69 |
| Conread position: | 1-515 |
| Cow position: | chr18:23797800-23797281 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr18:33336020-33335508 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 69 |
| Conread position: | 1-515 |
| Cow position: | chr18:36508485-36507963 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 38 |
| Conread position: | 1-515 |
| Cow position: | chr18:37505216-37504696 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 69 |
| Conread position: | 1-515 |
| Cow position: | chr18:54024207-54024725 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 37 |
| Conread position: | 2-304 |
| Cow position: | chr18:2886869-2887173 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 68 |
| Conread position: | 2-508 |
| Cow position: | chr18:35801566-35802066 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 306 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 127, 41 |
| Conread position: | 2-515 |
| Cow position: | chr18:27838164-27838667 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 27 |
| Conread position: | 2-515 |
| Cow position: | chr18:41840673-41841195 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 76 |
| Conread position: | 3-122 |
| Cow position: | chr18:19539429-19539547 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 3-143 |
| Cow position: | chr18:24040582-24040721 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-281 |
| Cow position: | chr18:51341837-51341562 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-344 |
| Cow position: | chr18:53785990-53785652 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 70 |
| Conread position: | 3-366 |
| Cow position: | chr18:6869108-6869467 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 67 |
| Conread position: | 3-383 |
| Cow position: | chr18:51689775-51689398 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 67 |
| Conread position: | 3-466 |
| Cow position: | chr18:17992414-17992880 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 79 |
| Conread position: | 3-468 |
| Cow position: | chr18:1521279-1520807 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 67 |
| Conread position: | 3-477 |
| Cow position: | chr18:22602638-22602157 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 67 |
| Conread position: | 3-479 |
| Cow position: | chr18:33953418-33953899 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 67 |
| Conread position: | 3-484 |
| Cow position: | chr18:47719433-47719906 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 69 |
| Conread position: | 3-486 |
| Cow position: | chr18:47742169-47741679 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 69 |
| Conread position: | 3-486 |
| Cow position: | chr18:51310736-51310248 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 96 |
| Conread position: | 3-487 |
| Cow position: | chr18:33268976-33268504 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 52 |
| Conread position: | 3-487 |
| Cow position: | chr18:33359018-33358525 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 67 |
| Conread position: | 3-487 |
| Cow position: | chr18:43146775-43147265 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 67 |
| Conread position: | 3-492 |
| Cow position: | chr18:2019535-2020027 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 67 |
| Conread position: | 3-501 |
| Cow position: | chr18:51258134-51257628 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 160 |
| Conread position: | 3-506 |
| Cow position: | chr18:23944224-23944728 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 67 |
| Conread position: | 3-506 |
| Cow position: | chr18:48222030-48221522 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 159 |
| Conread position: | 3-513 |
| Cow position: | chr18:32293918-32293412 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 3-513 |
| Cow position: | chr18:39748729-39748219 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 67 |
| Conread position: | 3-514 |
| Cow position: | chr18:51480990-51480471 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 156 |
| Conread position: | 3-515 |
| Cow position: | chr18:11274955-11275457 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 3-515 |
| Cow position: | chr18:16078868-16078335 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 172 |
| Conread position: | 3-515 |
| Cow position: | chr18:19352536-19352008 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 67 |
| Conread position: | 3-515 |
| Cow position: | chr18:44621910-44621388 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 67 |
| Conread position: | 3-515 |
| Cow position: | chr18:55088774-55089295 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 67 |
| Conread position: | 4-388 |
| Cow position: | chr18:43201204-43200834 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 88 |
| Conread position: | 5-371 |
| Cow position: | chr18:16534127-16533767 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 65 |
| Conread position: | 5-489 |
| Cow position: | chr18:18897640-18897170 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 312 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 322, 80 |
| Conread position: | 5-509 |
| Cow position: | chr18:29070396-29069901 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 118, 65 |
| Conread position: | 7-514 |
| Cow position: | chr18:16176471-16176975 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 55 |
| Conread position: | 8-325 |
| Cow position: | chr18:29236956-29236647 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 63 |
| Conread position: | 9-281 |
| Cow position: | chr18:54044562-54044825 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 20-486 |
| Cow position: | chr18:40193752-40193286 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 21-515 |
| Cow position: | chr18:37599405-37599899 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 344 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 110, 33 |
| Conread position: | 35-454 |
| Cow position: | chr18:27987146-27986722 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 35 |
| Conread position: | 42-278 |
| Cow position: | chr18:48452649-48452415 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 48-515 |
| Cow position: | chr18:54171740-54172213 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 28 |
| Conread position: | 81-513 |
| Cow position: | chr18:16307121-16306685 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 81-516 |
| Cow position: | chr18:29763529-29763120 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 407, 77 |
| Conread position: | 91-515 |
| Cow position: | chr18:51660481-51660057 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 67 |
| Conread position: | 96-513 |
| Cow position: | chr18:45958742-45958338 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 32 |
| Conread position: | 100-423 |
| Cow position: | chr18:44601592-44601267 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 109-293 |
| Cow position: | chr18:22869801-22869616 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 168, 49 |
| Conread position: | 114-461 |
| Cow position: | chr18:32652036-32651682 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 44 |
| Conread position: | 135-439 |
| Cow position: | chr18:19539855-19540162 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 17 |
| Conread position: | 135-442 |
| Cow position: | chr18:51464457-51464766 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 234, 23 |
| Conread position: | 135-515 |
| Cow position: | chr18:25350059-25349670 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 23 |
| Conread position: | 156-515 |
| Cow position: | chr18:37585663-37586033 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 157-479 |
| Cow position: | chr18:48301347-48301671 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 163-348 |
| Cow position: | chr18:54269460-54269276 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 115, 94 |
| Conread position: | 179-303 |
| Cow position: | chr18:40345345-40345472 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 193-515 |
| Cow position: | chr18:54002456-54002134 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 201, 185 |
| Conread position: | 216-487 |
| Cow position: | chr18:21294992-21294731 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 213, 53 |
| Conread position: | 262-515 |
| Cow position: | chr18:14130185-14129925 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 11 |
| Conread position: | 324-515 |
| Cow position: | chr18:29236609-29236409 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.