Cow genome map


           Conread name:
           Ss1.1-rpigca0_007986.5
        

               Conread position:
               1-224
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               58, 130
               

               Conread position:
               1-350
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-368
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               249, 71
               

               Conread position:
               1-465
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 69
               

               Conread position:
               1-492
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 69
               

               Conread position:
               1-502
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 69
               

               Conread position:
               1-513
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 61
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               387
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               358, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 38
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               250, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 37
               

               Conread position:
               2-304
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 68
               

               Conread position:
               2-508
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               306
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               127, 41
               

               Conread position:
               2-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 27
               

               Conread position:
               2-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               266, 76
               

               Conread position:
               3-122
               

               Cow position:
               
               

               Alignm length:
               120
               

               Alignm identity:
               93
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               3-143
               

               Cow position:
               
               

               Alignm length:
               141
               

               Alignm identity:
               105
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-281
               

               Cow position:
               
               

               Alignm length:
               279
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-344
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 70
               

               Conread position:
               3-366
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 67
               

               Conread position:
               3-383
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-466
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 79
               

               Conread position:
               3-468
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 67
               

               Conread position:
               3-477
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               274, 67
               

               Conread position:
               3-479
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 67
               

               Conread position:
               3-484
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 69
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               273, 69
               

               Conread position:
               3-486
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 96
               

               Conread position:
               3-487
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 52
               

               Conread position:
               3-487
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               277, 67
               

               Conread position:
               3-487
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 67
               

               Conread position:
               3-492
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               350, 67
               

               Conread position:
               3-501
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 160
               

               Conread position:
               3-506
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 67
               

               Conread position:
               3-506
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 159
               

               Conread position:
               3-513
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 10
               

               Conread position:
               3-513
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 67
               

               Conread position:
               3-514
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               368, 156
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 172
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 67
               

               Conread position:
               4-388
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               325, 88
               

               Conread position:
               5-371
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               345, 65
               

               Conread position:
               5-489
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               312
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               322, 80
               

               Conread position:
               5-509
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               321
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               118, 65
               

               Conread position:
               7-514
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 55
               

               Conread position:
               8-325
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 63
               

               Conread position:
               9-281
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               20-486
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               296
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               48, 58
               

               Conread position:
               21-515
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               344
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               110, 33
               

               Conread position:
               35-454
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               249, 35
               

               Conread position:
               42-278
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               50, 32
               

               Conread position:
               48-515
               

               Cow position:
               
               

               Alignm length:
               482
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 28
               

               Conread position:
               81-513
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               274
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               37, 51
               

               Conread position:
               81-516
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               253
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               407, 77
               

               Conread position:
               91-515
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 67
               

               Conread position:
               96-513
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 32
               

               Conread position:
               100-423
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               226
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               23, 14
               

               Conread position:
               109-293
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               168, 49
               

               Conread position:
               114-461
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 44
               

               Conread position:
               135-439
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 17
               

               Conread position:
               135-442
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               226
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               234, 23
               

               Conread position:
               135-515
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 23
               

               Conread position:
               156-515
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 60
               

               Conread position:
               157-479
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               213
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               56, 24
               

               Conread position:
               163-348
               

               Cow position:
               
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               115, 94
               

               Conread position:
               179-303
               

               Cow position:
               
               

               Alignm length:
               128
               

               Alignm identity:
               99
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               193-515
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               201, 185
               

               Conread position:
               216-487
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               213, 53
               

               Conread position:
               262-515
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               197
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               116, 11
               

               Conread position:
               324-515
               

               Cow position:
               
               

               Alignm length:
               201
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               48, 0
               
Show alignments to all cow chromosomes.