Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-281 |
| Cow position: | chr19:33873583-33873307 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-304 |
| Cow position: | chr19:42248963-42248669 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 171, 77 |
| Conread position: | 1-465 |
| Cow position: | chr19:7488470-7487999 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 69 |
| Conread position: | 1-465 |
| Cow position: | chr19:20111079-20111539 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 129, 47 |
| Conread position: | 1-466 |
| Cow position: | chr19:39688686-39688235 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 47 |
| Conread position: | 1-486 |
| Cow position: | chr19:35979423-35978933 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 160 |
| Conread position: | 1-498 |
| Cow position: | chr19:548521-548049 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 339 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 209, 60 |
| Conread position: | 1-513 |
| Cow position: | chr19:30755338-30754813 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 345 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 1-514 |
| Cow position: | chr19:76112-76595 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 20 |
| Conread position: | 1-515 |
| Cow position: | chr19:34574-34061 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 54 |
| Conread position: | 1-515 |
| Cow position: | chr19:172368-171845 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr19:204118-203597 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 69 |
| Conread position: | 1-515 |
| Cow position: | chr19:261601-261070 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 71 |
| Conread position: | 1-515 |
| Cow position: | chr19:10672149-10672672 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr19:32183305-32183810 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 329 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 124, 35 |
| Conread position: | 1-515 |
| Cow position: | chr19:39390665-39390161 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 54 |
| Conread position: | 1-515 |
| Cow position: | chr19:40852281-40852796 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr19:40887495-40888011 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 75 |
| Conread position: | 1-515 |
| Cow position: | chr19:55078903-55078384 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 69 |
| Conread position: | 1-516 |
| Cow position: | chr19:20125765-20125266 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 54 |
| Conread position: | 2-401 |
| Cow position: | chr19:39546783-39546386 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 69 |
| Conread position: | 3-155 |
| Cow position: | chr19:687220-687070 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-217 |
| Cow position: | chr19:32237527-32237736 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-480 |
| Cow position: | chr19:170591-171071 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 50 |
| Conread position: | 3-486 |
| Cow position: | chr19:772754-772275 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 67 |
| Conread position: | 3-486 |
| Cow position: | chr19:28593436-28592948 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 69 |
| Conread position: | 3-486 |
| Cow position: | chr19:32244839-32244345 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 67 |
| Conread position: | 3-488 |
| Cow position: | chr19:29209714-29209230 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 67 |
| Conread position: | 3-500 |
| Cow position: | chr19:416816-416299 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 73 |
| Conread position: | 3-515 |
| Cow position: | chr19:38051-37541 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 485, 67 |
| Conread position: | 3-515 |
| Cow position: | chr19:7342223-7341706 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 67 |
| Conread position: | 3-515 |
| Cow position: | chr19:32211918-32212426 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 3-515 |
| Cow position: | chr19:43143871-43143353 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 67 |
| Conread position: | 3-516 |
| Cow position: | chr19:30372431-30371911 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 31 |
| Conread position: | 4-267 |
| Cow position: | chr19:6553756-6553505 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 145, 32 |
| Conread position: | 4-321 |
| Cow position: | chr19:543472-543790 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 117, 66 |
| Conread position: | 4-486 |
| Cow position: | chr19:32665684-32665200 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 72 |
| Conread position: | 5-370 |
| Cow position: | chr19:893460-893814 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 5-471 |
| Cow position: | chr19:15954006-15953557 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 306 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 116, 85 |
| Conread position: | 5-513 |
| Cow position: | chr19:4385635-4385124 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 150 |
| Conread position: | 5-514 |
| Cow position: | chr19:33941765-33941249 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 65 |
| Conread position: | 5-515 |
| Cow position: | chr19:359352-359858 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 16 |
| Conread position: | 5-515 |
| Cow position: | chr19:32223292-32223774 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 6-370 |
| Cow position: | chr19:39345854-39346223 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 101, 54 |
| Conread position: | 6-371 |
| Cow position: | chr19:32202898-32202545 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 44, 78 |
| Conread position: | 7-295 |
| Cow position: | chr19:42299347-42299633 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 46, 55 |
| Conread position: | 7-495 |
| Cow position: | chr19:31341859-31341381 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 7-515 |
| Cow position: | chr19:28581506-28582000 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 43 |
| Conread position: | 12-338 |
| Cow position: | chr19:27052623-27052943 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 64 |
| Conread position: | 13-502 |
| Cow position: | chr19:439498-439995 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 57 |
| Conread position: | 29-500 |
| Cow position: | chr19:4532625-4533093 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 47 |
| Conread position: | 32-319 |
| Cow position: | chr19:28376644-28376370 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 22 |
| Conread position: | 32-515 |
| Cow position: | chr19:32193704-32193218 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 126 |
| Conread position: | 50-388 |
| Cow position: | chr19:561397-561731 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 66-265 |
| Cow position: | chr19:350190-350387 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 88-506 |
| Cow position: | chr19:4252288-4252710 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 25 |
| Conread position: | 135-479 |
| Cow position: | chr19:52152237-52152577 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 23 |
| Conread position: | 142-515 |
| Cow position: | chr19:685860-685489 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 16 |
| Conread position: | 148-515 |
| Cow position: | chr19:35376571-35376200 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 88, 139 |
| Conread position: | 150-507 |
| Cow position: | chr19:42649064-42649420 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 54 |
| Conread position: | 157-477 |
| Cow position: | chr19:36036363-36036041 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 105, 37 |
| Conread position: | 157-513 |
| Cow position: | chr19:377871-378246 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 124, 68 |
| Conread position: | 178-483 |
| Cow position: | chr19:7405467-7405762 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 179-500 |
| Cow position: | chr19:1032088-1031767 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 295 |
| Conread position: | 203-498 |
| Cow position: | chr19:32237899-32238199 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 220 |
| Conread position: | 244-516 |
| Cow position: | chr19:6553309-6553045 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 31, 106 |
| Conread position: | 252-515 |
| Cow position: | chr19:36477263-36476998 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 244 |
| Conread position: | 258-487 |
| Cow position: | chr19:350666-350910 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 101, 157 |
| Conread position: | 280-515 |
| Cow position: | chr19:33873117-33872878 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 311-489 |
| Cow position: | chr19:801838-801653 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 324-513 |
| Cow position: | chr19:544056-544254 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.