Cow genome map
| Conread name: | Ss1.1-rpigca0_007986.5 |
| Conread position: | 1-169 |
| Cow position: | chr20:29948613-29948448 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-212 |
| Cow position: | chr20:13679943-13680150 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-281 |
| Cow position: | chr20:8004111-8004389 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 69 |
| Conread position: | 1-286 |
| Cow position: | chr20:15292124-15291850 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-465 |
| Cow position: | chr20:28565482-28565957 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 69 |
| Conread position: | 1-475 |
| Cow position: | chr20:5484303-5483827 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 69 |
| Conread position: | 1-487 |
| Cow position: | chr20:28160890-28160402 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 69 |
| Conread position: | 1-512 |
| Cow position: | chr20:27869311-27868792 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 69 |
| Conread position: | 1-514 |
| Cow position: | chr20:23469545-23470068 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-514 |
| Cow position: | chr20:30684449-30683931 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr20:2677229-2676712 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 332 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 194, 20 |
| Conread position: | 1-515 |
| Cow position: | chr20:5535052-5534539 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 69 |
| Conread position: | 1-515 |
| Cow position: | chr20:12438647-12439168 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 69 |
| Conread position: | 1-515 |
| Cow position: | chr20:13763017-13762501 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 70 |
| Conread position: | 1-515 |
| Cow position: | chr20:15064880-15064353 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 10 |
| Conread position: | 1-515 |
| Cow position: | chr20:21914441-21913930 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 154 |
| Conread position: | 1-515 |
| Cow position: | chr20:23798996-23798474 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-515 |
| Cow position: | chr20:25850877-25851394 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 69 |
| Conread position: | 1-516 |
| Cow position: | chr20:15097764-15098273 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 69 |
| Conread position: | 2-469 |
| Cow position: | chr20:3270817-3270362 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 2-515 |
| Cow position: | chr20:7116356-7116879 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 68 |
| Conread position: | 3-217 |
| Cow position: | chr20:3033173-3032965 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-230 |
| Cow position: | chr20:25961215-25960991 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 3-244 |
| Cow position: | chr20:15947279-15947519 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 22, 69 |
| Conread position: | 3-350 |
| Cow position: | chr20:11678998-11679345 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 67 |
| Conread position: | 3-375 |
| Cow position: | chr20:35119682-35119314 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 106, 36 |
| Conread position: | 3-475 |
| Cow position: | chr20:24614646-24614183 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 57 |
| Conread position: | 3-479 |
| Cow position: | chr20:5560603-5561086 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 67 |
| Conread position: | 3-506 |
| Cow position: | chr20:822879-822361 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 67 |
| Conread position: | 3-515 |
| Cow position: | chr20:19438061-19437556 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 67 |
| Conread position: | 3-515 |
| Cow position: | chr20:21393676-21393163 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 73 |
| Conread position: | 4-155 |
| Cow position: | chr20:3684374-3684524 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 5-304 |
| Cow position: | chr20:7085470-7085761 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 144, 57 |
| Conread position: | 5-515 |
| Cow position: | chr20:22206646-22206127 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 353 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 271, 35 |
| Conread position: | 5-516 |
| Cow position: | chr20:13665100-13665574 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 338 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 269, 56 |
| Conread position: | 6-486 |
| Cow position: | chr20:2791245-2791727 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 322 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 136, 70 |
| Conread position: | 6-487 |
| Cow position: | chr20:3252025-3252518 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 64 |
| Conread position: | 6-500 |
| Cow position: | chr20:8313332-8313823 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 28 |
| Conread position: | 7-455 |
| Cow position: | chr20:22717586-22718026 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 96 |
| Conread position: | 7-515 |
| Cow position: | chr20:20905095-20905590 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 337 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 44, 94 |
| Conread position: | 7-516 |
| Cow position: | chr20:31378777-31379278 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 337 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 270, 65 |
| Conread position: | 9-454 |
| Cow position: | chr20:9953879-9954301 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 433, 63 |
| Conread position: | 10-512 |
| Cow position: | chr20:29572088-29572594 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 66 |
| Conread position: | 15-486 |
| Cow position: | chr20:4799551-4800022 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 61 |
| Conread position: | 17-462 |
| Cow position: | chr20:35973311-35973754 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 224, 59 |
| Conread position: | 17-511 |
| Cow position: | chr20:10102461-10102945 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 53 |
| Conread position: | 47-505 |
| Cow position: | chr20:18315516-18315978 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 23 |
| Conread position: | 48-486 |
| Cow position: | chr20:10846010-10846453 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 52-370 |
| Cow position: | chr20:35119389-35119070 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 107 |
| Conread position: | 67-509 |
| Cow position: | chr20:20755375-20755830 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 306 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 7, 28 |
| Conread position: | 81-371 |
| Cow position: | chr20:19192093-19192384 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 77 |
| Conread position: | 87-515 |
| Cow position: | chr20:28593776-28593337 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 72 |
| Conread position: | 89-371 |
| Cow position: | chr20:37579485-37579200 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 54, 79 |
| Conread position: | 91-320 |
| Cow position: | chr20:24390389-24390168 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 177, 33 |
| Conread position: | 207-506 |
| Cow position: | chr20:3032840-3032538 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 61 |
| Conread position: | 208-515 |
| Cow position: | chr20:11276386-11276680 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 63 |
| Conread position: | 230-515 |
| Cow position: | chr20:5575567-5575284 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 50, 148 |
| Conread position: | 264-515 |
| Cow position: | chr20:8004662-8004921 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 205 |
| Conread position: | 277-507 |
| Cow position: | chr20:31124244-31124008 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 92, 215 |
| Conread position: | 285-515 |
| Cow position: | chr20:29948016-29947777 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 303-502 |
| Cow position: | chr20:13681279-13681474 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 320-515 |
| Cow position: | chr20:15291843-15291639 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 329-515 |
| Cow position: | chr20:35119033-35118843 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 76 |
Show alignments to all cow chromosomes.