Cow genome map


           Conread name:
           Ss1.1-rpigca0_007986.5
        

               Conread position:
               1-169
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-212
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 69
               

               Conread position:
               1-286
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               207
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-465
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 69
               

               Conread position:
               1-475
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               370
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               276, 69
               

               Conread position:
               1-487
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 69
               

               Conread position:
               1-512
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 69
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-514
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               332
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               194, 20
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               370, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 70
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 10
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 154
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-515
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               383
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               270, 69
               

               Conread position:
               1-516
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               365, 69
               

               Conread position:
               2-469
               

               Cow position:
               
               

               Alignm length:
               471
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 68
               

               Conread position:
               2-515
               

               Cow position:
               
               

               Alignm length:
               527
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 68
               

               Conread position:
               3-217
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-230
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               3-244
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               180
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               22, 69
               

               Conread position:
               3-350
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-375
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               106, 36
               

               Conread position:
               3-475
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               367, 57
               

               Conread position:
               3-479
               

               Cow position:
               
               

               Alignm length:
               487
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               265, 67
               

               Conread position:
               3-506
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               254, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 67
               

               Conread position:
               3-515
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 73
               

               Conread position:
               4-155
               

               Cow position:
               
               

               Alignm length:
               152
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               5-304
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               144, 57
               

               Conread position:
               5-515
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               353
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               271, 35
               

               Conread position:
               5-516
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               338
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               269, 56
               

               Conread position:
               6-486
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               322
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               136, 70
               

               Conread position:
               6-487
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 64
               

               Conread position:
               6-500
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 28
               

               Conread position:
               7-455
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 96
               

               Conread position:
               7-515
               

               Cow position:
               
               

               Alignm length:
               523
               

               Alignm identity:
               337
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               44, 94
               

               Conread position:
               7-516
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               337
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               270, 65
               

               Conread position:
               9-454
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               433, 63
               

               Conread position:
               10-512
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 66
               

               Conread position:
               15-486
               

               Cow position:
               
               

               Alignm length:
               479
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               355, 61
               

               Conread position:
               17-462
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               297
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               224, 59
               

               Conread position:
               17-511
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 53
               

               Conread position:
               47-505
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               291, 23
               

               Conread position:
               48-486
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 22
               

               Conread position:
               52-370
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 107
               

               Conread position:
               67-509
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               306
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               7, 28
               

               Conread position:
               81-371
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 77
               

               Conread position:
               87-515
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 72
               

               Conread position:
               89-371
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               188
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               54, 79
               

               Conread position:
               91-320
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               177, 33
               

               Conread position:
               207-506
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 61
               

               Conread position:
               208-515
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 63
               

               Conread position:
               230-515
               

               Cow position:
               
               

               Alignm length:
               292
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               50, 148
               

               Conread position:
               264-515
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 205
               

               Conread position:
               277-507
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               92, 215
               

               Conread position:
               285-515
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               180
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               303-502
               

               Cow position:
               
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               172, 0
               

               Conread position:
               320-515
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               329-515
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               43, 76
               
Show alignments to all cow chromosomes.